data_5CVQ # _model_server_result.job_id Vsc4HH9thbY7p1YQeaAUjA _model_server_result.datetime_utc '2025-01-10 13:19:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5CVQ # _exptl.entry_id 5CVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CVQ _cell.length_a 58.641 _cell.length_b 58.641 _cell.length_c 265.848 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 E CD CD . A CD 204 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A NE2 HIS 43 A HIS 43 1_555 B CD CD . A CD 201 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A SG CYS 99 A CYS 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 A OE1 GLU 128 A GLU 128 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 A OE1 GLU 130 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 A OE2 GLU 130 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 A OE1 GLU 132 A GLU 132 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 A NE2 HIS 141 A HIS 141 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc9 A NE2 HIS 145 A HIS 145 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 B CD CD . A CD 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc11 B CD CD . A CD 201 1_555 G O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 C CD CD . A CD 202 1_555 F O4 BB2 . A BB2 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 C CD CD . A CD 202 1_555 F O2 BB2 . A BB2 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc14 E CD CD . A CD 204 1_555 G O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc15 E CD CD . A CD 204 1_555 G O HOH . A HOH 375 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CVQ _atom_sites.fract_transf_matrix[1][1] 0.017053 _atom_sites.fract_transf_matrix[1][2] 0.009846 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 3 ACT A 1 203 203 ACT ACT . E 2 CD A 1 204 204 CD CD . F 4 BB2 A 1 205 1 BB2 BB2 . G 5 HOH A 1 301 326 HOH HOH . G 5 HOH A 2 302 304 HOH HOH . G 5 HOH A 3 303 301 HOH HOH . G 5 HOH A 4 304 305 HOH HOH . G 5 HOH A 5 305 303 HOH HOH . G 5 HOH A 6 306 302 HOH HOH . G 5 HOH A 7 307 306 HOH HOH . G 5 HOH A 8 308 307 HOH HOH . G 5 HOH A 9 309 308 HOH HOH . G 5 HOH A 10 310 310 HOH HOH . G 5 HOH A 11 311 311 HOH HOH . G 5 HOH A 12 312 309 HOH HOH . G 5 HOH A 13 313 314 HOH HOH . G 5 HOH A 14 314 316 HOH HOH . G 5 HOH A 15 315 312 HOH HOH . G 5 HOH A 16 316 321 HOH HOH . G 5 HOH A 17 317 319 HOH HOH . G 5 HOH A 18 318 320 HOH HOH . G 5 HOH A 19 319 318 HOH HOH . G 5 HOH A 20 320 317 HOH HOH . G 5 HOH A 21 321 315 HOH HOH . G 5 HOH A 22 322 313 HOH HOH . G 5 HOH A 23 323 324 HOH HOH . G 5 HOH A 24 324 322 HOH HOH . G 5 HOH A 25 325 323 HOH HOH . G 5 HOH A 26 326 327 HOH HOH . G 5 HOH A 27 327 325 HOH HOH . G 5 HOH A 28 328 331 HOH HOH . G 5 HOH A 29 329 333 HOH HOH . G 5 HOH A 30 330 340 HOH HOH . G 5 HOH A 31 331 332 HOH HOH . G 5 HOH A 32 332 328 HOH HOH . G 5 HOH A 33 333 330 HOH HOH . G 5 HOH A 34 334 329 HOH HOH . G 5 HOH A 35 335 336 HOH HOH . G 5 HOH A 36 336 339 HOH HOH . G 5 HOH A 37 337 337 HOH HOH . G 5 HOH A 38 338 338 HOH HOH . G 5 HOH A 39 339 335 HOH HOH . G 5 HOH A 40 340 334 HOH HOH . G 5 HOH A 41 341 347 HOH HOH . G 5 HOH A 42 342 342 HOH HOH . G 5 HOH A 43 343 341 HOH HOH . G 5 HOH A 44 344 359 HOH HOH . G 5 HOH A 45 345 344 HOH HOH . G 5 HOH A 46 346 343 HOH HOH . G 5 HOH A 47 347 346 HOH HOH . G 5 HOH A 48 348 373 HOH HOH . G 5 HOH A 49 349 349 HOH HOH . G 5 HOH A 50 350 345 HOH HOH . G 5 HOH A 51 351 348 HOH HOH . G 5 HOH A 52 352 350 HOH HOH . G 5 HOH A 53 353 355 HOH HOH . G 5 HOH A 54 354 352 HOH HOH . G 5 HOH A 55 355 351 HOH HOH . G 5 HOH A 56 356 354 HOH HOH . G 5 HOH A 57 357 353 HOH HOH . G 5 HOH A 58 358 357 HOH HOH . G 5 HOH A 59 359 360 HOH HOH . G 5 HOH A 60 360 361 HOH HOH . G 5 HOH A 61 361 356 HOH HOH . G 5 HOH A 62 362 358 HOH HOH . G 5 HOH A 63 363 362 HOH HOH . G 5 HOH A 64 364 364 HOH HOH . G 5 HOH A 65 365 366 HOH HOH . G 5 HOH A 66 366 365 HOH HOH . G 5 HOH A 67 367 363 HOH HOH . G 5 HOH A 68 368 370 HOH HOH . G 5 HOH A 69 369 372 HOH HOH . G 5 HOH A 70 370 368 HOH HOH . G 5 HOH A 71 371 367 HOH HOH . G 5 HOH A 72 372 369 HOH HOH . G 5 HOH A 73 373 371 HOH HOH . G 5 HOH A 74 374 375 HOH HOH . G 5 HOH A 75 375 379 HOH HOH . G 5 HOH A 76 376 374 HOH HOH . G 5 HOH A 77 377 377 HOH HOH . G 5 HOH A 78 378 376 HOH HOH . G 5 HOH A 79 379 378 HOH HOH . G 5 HOH A 80 380 380 HOH HOH . G 5 HOH A 81 381 381 HOH HOH . G 5 HOH A 82 382 384 HOH HOH . G 5 HOH A 83 383 383 HOH HOH . G 5 HOH A 84 384 382 HOH HOH . G 5 HOH A 85 385 385 HOH HOH . G 5 HOH A 86 386 386 HOH HOH . G 5 HOH A 87 387 387 HOH HOH . G 5 HOH A 88 388 388 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.117 _atom_site.Cartn_y -29.148 _atom_site.Cartn_z -10.256 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #