data_5CVQ # _model_server_result.job_id GZYxhfc-fNerQlxt0E-KoA _model_server_result.datetime_utc '2025-01-25 11:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5CVQ # _exptl.entry_id 5CVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.498 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACTINONIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CVQ _cell.length_a 58.641 _cell.length_b 58.641 _cell.length_c 265.848 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 E CD CD . A CD 204 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 A NE2 HIS 43 A HIS 43 1_555 B CD CD . A CD 201 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A SG CYS 99 A CYS 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc4 A OE1 GLU 128 A GLU 128 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc5 A OE1 GLU 130 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc6 A OE2 GLU 130 A GLU 130 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 A OE1 GLU 132 A GLU 132 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc8 A NE2 HIS 141 A HIS 141 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc9 A NE2 HIS 145 A HIS 145 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc10 B CD CD . A CD 201 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc11 B CD CD . A CD 201 1_555 G O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc12 C CD CD . A CD 202 1_555 F O4 BB2 . A BB2 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 C CD CD . A CD 202 1_555 F O2 BB2 . A BB2 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc14 E CD CD . A CD 204 1_555 G O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc15 E CD CD . A CD 204 1_555 G O HOH . A HOH 375 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? # _chem_comp.formula 'C19 H35 N3 O5' _chem_comp.formula_weight 385.498 _chem_comp.id BB2 _chem_comp.mon_nstd_flag . _chem_comp.name ACTINONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-[(FORMYL-HYDROXY-AMINO)-METHYL]-HEPTANOIC ACID [1-(2-HYDROXYMETHYL-PYRROLIDINE-1-CARBONYL)-2-METHYL-PROPYL]-AMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C3 BB2 sing 76 n n C5 C6 BB2 sing 77 n n C5 H51 BB2 sing 78 n n C5 H52 BB2 sing 79 n n C3 O4 BB2 doub 80 n n C3 N1 BB2 sing 81 n n N1 O2 BB2 sing 82 n n N1 HN1 BB2 sing 83 n n O2 HO2 BB2 sing 84 n n C6 C12 BB2 sing 85 n n C6 C7 BB2 sing 86 n n C6 H6 BB2 sing 87 n n C12 O13 BB2 doub 88 n n C12 N14 BB2 sing 89 n n C7 C8 BB2 sing 90 n n C7 H71 BB2 sing 91 n n C7 H72 BB2 sing 92 n n C8 C9 BB2 sing 93 n n C8 H81 BB2 sing 94 n n C8 H82 BB2 sing 95 n n C9 C10 BB2 sing 96 n n C9 H91 BB2 sing 97 n n C9 H92 BB2 sing 98 n n C10 C11 BB2 sing 99 n n C10 H101 BB2 sing 100 n n C10 H102 BB2 sing 101 n n C11 H111 BB2 sing 102 n n C11 H112 BB2 sing 103 n n C11 H113 BB2 sing 104 n n N14 C15 BB2 sing 105 n n N14 H14 BB2 sing 106 n n C15 C16 BB2 sing 107 n n C15 C19 BB2 sing 108 n n C15 H15 BB2 sing 109 n n C16 C18 BB2 sing 110 n n C16 C17 BB2 sing 111 n n C16 H16 BB2 sing 112 n n C18 H181 BB2 sing 113 n n C18 H182 BB2 sing 114 n n C18 H183 BB2 sing 115 n n C17 H171 BB2 sing 116 n n C17 H172 BB2 sing 117 n n C17 H173 BB2 sing 118 n n C19 O20 BB2 doub 119 n n C19 N21 BB2 sing 120 n n N21 C22 BB2 sing 121 n n N21 C23 BB2 sing 122 n n C22 C25 BB2 sing 123 n n C22 C26 BB2 sing 124 n n C22 H22 BB2 sing 125 n n C23 C24 BB2 sing 126 n n C23 H231 BB2 sing 127 n n C23 H232 BB2 sing 128 n n C24 C25 BB2 sing 129 n n C24 H241 BB2 sing 130 n n C24 H242 BB2 sing 131 n n C25 H251 BB2 sing 132 n n C25 H252 BB2 sing 133 n n C26 O27 BB2 sing 134 n n C26 H261 BB2 sing 135 n n C26 H262 BB2 sing 136 n n O27 H27 BB2 sing 137 n n # _atom_sites.entry_id 5CVQ _atom_sites.fract_transf_matrix[1][1] 0.017053 _atom_sites.fract_transf_matrix[1][2] 0.009846 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 3 ACT A 1 203 203 ACT ACT . E 2 CD A 1 204 204 CD CD . F 4 BB2 A 1 205 1 BB2 BB2 . G 5 HOH A 1 301 326 HOH HOH . G 5 HOH A 2 302 304 HOH HOH . G 5 HOH A 3 303 301 HOH HOH . G 5 HOH A 4 304 305 HOH HOH . G 5 HOH A 5 305 303 HOH HOH . G 5 HOH A 6 306 302 HOH HOH . G 5 HOH A 7 307 306 HOH HOH . G 5 HOH A 8 308 307 HOH HOH . G 5 HOH A 9 309 308 HOH HOH . G 5 HOH A 10 310 310 HOH HOH . G 5 HOH A 11 311 311 HOH HOH . G 5 HOH A 12 312 309 HOH HOH . G 5 HOH A 13 313 314 HOH HOH . G 5 HOH A 14 314 316 HOH HOH . G 5 HOH A 15 315 312 HOH HOH . G 5 HOH A 16 316 321 HOH HOH . G 5 HOH A 17 317 319 HOH HOH . G 5 HOH A 18 318 320 HOH HOH . G 5 HOH A 19 319 318 HOH HOH . G 5 HOH A 20 320 317 HOH HOH . G 5 HOH A 21 321 315 HOH HOH . G 5 HOH A 22 322 313 HOH HOH . G 5 HOH A 23 323 324 HOH HOH . G 5 HOH A 24 324 322 HOH HOH . G 5 HOH A 25 325 323 HOH HOH . G 5 HOH A 26 326 327 HOH HOH . G 5 HOH A 27 327 325 HOH HOH . G 5 HOH A 28 328 331 HOH HOH . G 5 HOH A 29 329 333 HOH HOH . G 5 HOH A 30 330 340 HOH HOH . G 5 HOH A 31 331 332 HOH HOH . G 5 HOH A 32 332 328 HOH HOH . G 5 HOH A 33 333 330 HOH HOH . G 5 HOH A 34 334 329 HOH HOH . G 5 HOH A 35 335 336 HOH HOH . G 5 HOH A 36 336 339 HOH HOH . G 5 HOH A 37 337 337 HOH HOH . G 5 HOH A 38 338 338 HOH HOH . G 5 HOH A 39 339 335 HOH HOH . G 5 HOH A 40 340 334 HOH HOH . G 5 HOH A 41 341 347 HOH HOH . G 5 HOH A 42 342 342 HOH HOH . G 5 HOH A 43 343 341 HOH HOH . G 5 HOH A 44 344 359 HOH HOH . G 5 HOH A 45 345 344 HOH HOH . G 5 HOH A 46 346 343 HOH HOH . G 5 HOH A 47 347 346 HOH HOH . G 5 HOH A 48 348 373 HOH HOH . G 5 HOH A 49 349 349 HOH HOH . G 5 HOH A 50 350 345 HOH HOH . G 5 HOH A 51 351 348 HOH HOH . G 5 HOH A 52 352 350 HOH HOH . G 5 HOH A 53 353 355 HOH HOH . G 5 HOH A 54 354 352 HOH HOH . G 5 HOH A 55 355 351 HOH HOH . G 5 HOH A 56 356 354 HOH HOH . G 5 HOH A 57 357 353 HOH HOH . G 5 HOH A 58 358 357 HOH HOH . G 5 HOH A 59 359 360 HOH HOH . G 5 HOH A 60 360 361 HOH HOH . G 5 HOH A 61 361 356 HOH HOH . G 5 HOH A 62 362 358 HOH HOH . G 5 HOH A 63 363 362 HOH HOH . G 5 HOH A 64 364 364 HOH HOH . G 5 HOH A 65 365 366 HOH HOH . G 5 HOH A 66 366 365 HOH HOH . G 5 HOH A 67 367 363 HOH HOH . G 5 HOH A 68 368 370 HOH HOH . G 5 HOH A 69 369 372 HOH HOH . G 5 HOH A 70 370 368 HOH HOH . G 5 HOH A 71 371 367 HOH HOH . G 5 HOH A 72 372 369 HOH HOH . G 5 HOH A 73 373 371 HOH HOH . G 5 HOH A 74 374 375 HOH HOH . G 5 HOH A 75 375 379 HOH HOH . G 5 HOH A 76 376 374 HOH HOH . G 5 HOH A 77 377 377 HOH HOH . G 5 HOH A 78 378 376 HOH HOH . G 5 HOH A 79 379 378 HOH HOH . G 5 HOH A 80 380 380 HOH HOH . G 5 HOH A 81 381 381 HOH HOH . G 5 HOH A 82 382 384 HOH HOH . G 5 HOH A 83 383 383 HOH HOH . G 5 HOH A 84 384 382 HOH HOH . G 5 HOH A 85 385 385 HOH HOH . G 5 HOH A 86 386 386 HOH HOH . G 5 HOH A 87 387 387 HOH HOH . G 5 HOH A 88 388 388 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 BB2 . . . F 4 3.169 -14.607 1.49 1 24.57 ? C5 BB2 205 A 1 HETATM 2 C C3 BB2 . . . F 4 3.887 -13.971 2.642 1 25.73 ? C3 BB2 205 A 1 HETATM 3 O O4 BB2 . . . F 4 3.797 -12.758 2.817 1 22.57 ? O4 BB2 205 A 1 HETATM 4 N N1 BB2 . . . F 4 4.586 -14.844 3.38 1 26.7 ? N1 BB2 205 A 1 HETATM 5 O O2 BB2 . . . F 4 5.377 -14.478 4.468 1 25.81 ? O2 BB2 205 A 1 HETATM 6 C C6 BB2 . . . F 4 3.972 -14.354 0.239 1 23.45 ? C6 BB2 205 A 1 HETATM 7 C C12 BB2 . . . F 4 3.094 -14.674 -0.958 1 24.27 ? C12 BB2 205 A 1 HETATM 8 O O13 BB2 . . . F 4 2.334 -15.663 -0.962 1 23.03 ? O13 BB2 205 A 1 HETATM 9 C C7 BB2 . . . F 4 5.24 -15.237 0.249 1 24.2 ? C7 BB2 205 A 1 HETATM 10 C C8 BB2 . . . F 4 6.105 -14.867 -0.955 1 22.13 ? C8 BB2 205 A 1 HETATM 11 C C9 BB2 . . . F 4 7.066 -15.962 -1.278 1 21.03 ? C9 BB2 205 A 1 HETATM 12 C C10 BB2 . . . F 4 8.073 -15.419 -2.279 1 20.46 ? C10 BB2 205 A 1 HETATM 13 C C11 BB2 . . . F 4 7.518 -15.573 -3.681 1 20.46 ? C11 BB2 205 A 1 HETATM 14 N N14 BB2 . . . F 4 3.222 -13.81 -1.972 1 23.47 ? N14 BB2 205 A 1 HETATM 15 C C15 BB2 . . . F 4 2.713 -13.987 -3.326 1 25.12 ? C15 BB2 205 A 1 HETATM 16 C C16 BB2 . . . F 4 1.409 -13.157 -3.63 1 25.65 ? C16 BB2 205 A 1 HETATM 17 C C18 BB2 . . . F 4 0.202 -13.373 -2.682 1 22.18 ? C18 BB2 205 A 1 HETATM 18 C C17 BB2 . . . F 4 1.73 -11.666 -3.588 1 25.35 ? C17 BB2 205 A 1 HETATM 19 C C19 BB2 . . . F 4 3.837 -13.673 -4.316 1 27.51 ? C19 BB2 205 A 1 HETATM 20 O O20 BB2 . . . F 4 4.706 -12.833 -4.051 1 30.28 ? O20 BB2 205 A 1 HETATM 21 N N21 BB2 . . . F 4 3.839 -14.36 -5.477 1 28.45 ? N21 BB2 205 A 1 HETATM 22 C C22 BB2 . . . F 4 4.995 -14.345 -6.428 1 30.1 ? C22 BB2 205 A 1 HETATM 23 C C23 BB2 . . . F 4 2.733 -15.222 -5.94 1 27.41 ? C23 BB2 205 A 1 HETATM 24 C C24 BB2 . . . F 4 3.348 -16.043 -7.063 1 29.98 ? C24 BB2 205 A 1 HETATM 25 C C25 BB2 . . . F 4 4.605 -15.317 -7.532 1 28.27 ? C25 BB2 205 A 1 HETATM 26 C C26 BB2 . . . F 4 5.153 -12.958 -7.067 1 30.28 ? C26 BB2 205 A 1 HETATM 27 O O27 BB2 . . . F 4 3.976 -12.76 -7.824 1 32.57 ? O27 BB2 205 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #