data_5CVV # _model_server_result.job_id 3laSD_5kGszkHN_g1BzOug _model_server_result.datetime_utc '2024-10-17 19:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5CVV # _exptl.entry_id 5CVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.2 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.18 _cell.angle_gamma 90 _cell.entry_id 5CVV _cell.length_a 68.29 _cell.length_b 67.48 _cell.length_c 74.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H12 O3' _chem_comp.formula_weight 180.2 _chem_comp.id N7I _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2-methoxyphenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coniferyl alcohol' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C3 N7I doub 237 n y C1 C7 N7I sing 238 n y O1 C10 N7I sing 239 n n C2 O3 N7I sing 240 n n O2 C4 N7I sing 241 n n C3 C4 N7I sing 242 n y O3 C5 N7I sing 243 n n C4 C5 N7I doub 244 n y C5 C6 N7I sing 245 n y C6 C7 N7I doub 246 n y C7 C8 N7I sing 247 n n C8 C9 N7I doub 248 n n C9 C10 N7I sing 249 n n C1 H1 N7I sing 250 n n O1 HO1 N7I sing 251 n n C2 H2 N7I sing 252 n n C2 H2A N7I sing 253 n n C2 H2B N7I sing 254 n n O2 HO2 N7I sing 255 n n C3 H3 N7I sing 256 e n C6 H6 N7I sing 257 n n C8 H8 N7I sing 258 n n C9 H9 N7I sing 259 n n C10 H10 N7I sing 260 n n C10 H10A N7I sing 261 n n # _atom_sites.entry_id 5CVV _atom_sites.fract_transf_matrix[1][1] 0.014643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000814 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 3 N7I A 1 402 1 N7I CNL . E 2 SAH B 1 401 2 SAH SAH . F 4 HOH A 1 501 129 HOH HOH . F 4 HOH A 2 502 158 HOH HOH . F 4 HOH A 3 503 221 HOH HOH . F 4 HOH A 4 504 238 HOH HOH . F 4 HOH A 5 505 13 HOH HOH . F 4 HOH A 6 506 226 HOH HOH . F 4 HOH A 7 507 101 HOH HOH . F 4 HOH A 8 508 53 HOH HOH . F 4 HOH A 9 509 72 HOH HOH . F 4 HOH A 10 510 240 HOH HOH . F 4 HOH A 11 511 1 HOH HOH . F 4 HOH A 12 512 21 HOH HOH . F 4 HOH A 13 513 32 HOH HOH . F 4 HOH A 14 514 159 HOH HOH . F 4 HOH A 15 515 138 HOH HOH . F 4 HOH A 16 516 11 HOH HOH . F 4 HOH A 17 517 163 HOH HOH . F 4 HOH A 18 518 177 HOH HOH . F 4 HOH A 19 519 136 HOH HOH . F 4 HOH A 20 520 8 HOH HOH . F 4 HOH A 21 521 128 HOH HOH . F 4 HOH A 22 522 68 HOH HOH . F 4 HOH A 23 523 117 HOH HOH . F 4 HOH A 24 524 46 HOH HOH . F 4 HOH A 25 525 26 HOH HOH . F 4 HOH A 26 526 31 HOH HOH . F 4 HOH A 27 527 93 HOH HOH . F 4 HOH A 28 528 82 HOH HOH . F 4 HOH A 29 529 211 HOH HOH . F 4 HOH A 30 530 55 HOH HOH . F 4 HOH A 31 531 37 HOH HOH . F 4 HOH A 32 532 131 HOH HOH . F 4 HOH A 33 533 266 HOH HOH . F 4 HOH A 34 534 62 HOH HOH . F 4 HOH A 35 535 257 HOH HOH . F 4 HOH A 36 536 86 HOH HOH . F 4 HOH A 37 537 137 HOH HOH . F 4 HOH A 38 538 92 HOH HOH . F 4 HOH A 39 539 168 HOH HOH . F 4 HOH A 40 540 130 HOH HOH . F 4 HOH A 41 541 49 HOH HOH . F 4 HOH A 42 542 25 HOH HOH . F 4 HOH A 43 543 230 HOH HOH . F 4 HOH A 44 544 96 HOH HOH . F 4 HOH A 45 545 14 HOH HOH . F 4 HOH A 46 546 3 HOH HOH . F 4 HOH A 47 547 2 HOH HOH . F 4 HOH A 48 548 212 HOH HOH . F 4 HOH A 49 549 9 HOH HOH . F 4 HOH A 50 550 91 HOH HOH . F 4 HOH A 51 551 193 HOH HOH . F 4 HOH A 52 552 205 HOH HOH . F 4 HOH A 53 553 235 HOH HOH . F 4 HOH A 54 554 48 HOH HOH . F 4 HOH A 55 555 58 HOH HOH . F 4 HOH A 56 556 242 HOH HOH . F 4 HOH A 57 557 268 HOH HOH . F 4 HOH A 58 558 197 HOH HOH . F 4 HOH A 59 559 23 HOH HOH . F 4 HOH A 60 560 30 HOH HOH . F 4 HOH A 61 561 7 HOH HOH . F 4 HOH A 62 562 122 HOH HOH . F 4 HOH A 63 563 75 HOH HOH . F 4 HOH A 64 564 27 HOH HOH . F 4 HOH A 65 565 63 HOH HOH . F 4 HOH A 66 566 207 HOH HOH . F 4 HOH A 67 567 109 HOH HOH . F 4 HOH A 68 568 250 HOH HOH . F 4 HOH A 69 569 140 HOH HOH . F 4 HOH A 70 570 147 HOH HOH . F 4 HOH A 71 571 182 HOH HOH . F 4 HOH A 72 572 133 HOH HOH . F 4 HOH A 73 573 167 HOH HOH . F 4 HOH A 74 574 104 HOH HOH . F 4 HOH A 75 575 10 HOH HOH . F 4 HOH A 76 576 77 HOH HOH . F 4 HOH A 77 577 33 HOH HOH . F 4 HOH A 78 578 4 HOH HOH . F 4 HOH A 79 579 97 HOH HOH . F 4 HOH A 80 580 6 HOH HOH . F 4 HOH A 81 581 15 HOH HOH . F 4 HOH A 82 582 141 HOH HOH . F 4 HOH A 83 583 199 HOH HOH . F 4 HOH A 84 584 50 HOH HOH . F 4 HOH A 85 585 89 HOH HOH . F 4 HOH A 86 586 29 HOH HOH . F 4 HOH A 87 587 18 HOH HOH . F 4 HOH A 88 588 99 HOH HOH . F 4 HOH A 89 589 203 HOH HOH . F 4 HOH A 90 590 189 HOH HOH . F 4 HOH A 91 591 260 HOH HOH . F 4 HOH A 92 592 112 HOH HOH . F 4 HOH A 93 593 106 HOH HOH . F 4 HOH A 94 594 42 HOH HOH . F 4 HOH A 95 595 178 HOH HOH . F 4 HOH A 96 596 19 HOH HOH . F 4 HOH A 97 597 78 HOH HOH . F 4 HOH A 98 598 247 HOH HOH . F 4 HOH A 99 599 217 HOH HOH . F 4 HOH A 100 600 28 HOH HOH . F 4 HOH A 101 601 161 HOH HOH . F 4 HOH A 102 602 74 HOH HOH . F 4 HOH A 103 603 249 HOH HOH . F 4 HOH A 104 604 79 HOH HOH . F 4 HOH A 105 605 34 HOH HOH . F 4 HOH A 106 606 54 HOH HOH . F 4 HOH A 107 607 184 HOH HOH . F 4 HOH A 108 608 47 HOH HOH . F 4 HOH A 109 609 95 HOH HOH . F 4 HOH A 110 610 202 HOH HOH . F 4 HOH A 111 611 69 HOH HOH . F 4 HOH A 112 612 196 HOH HOH . F 4 HOH A 113 613 118 HOH HOH . F 4 HOH A 114 614 233 HOH HOH . F 4 HOH A 115 615 22 HOH HOH . F 4 HOH A 116 616 98 HOH HOH . F 4 HOH A 117 617 173 HOH HOH . F 4 HOH A 118 618 119 HOH HOH . F 4 HOH A 119 619 5 HOH HOH . F 4 HOH A 120 620 282 HOH HOH . F 4 HOH A 121 621 187 HOH HOH . F 4 HOH A 122 622 192 HOH HOH . F 4 HOH A 123 623 254 HOH HOH . F 4 HOH A 124 624 150 HOH HOH . F 4 HOH A 125 625 200 HOH HOH . F 4 HOH A 126 626 259 HOH HOH . F 4 HOH A 127 627 276 HOH HOH . F 4 HOH A 128 628 281 HOH HOH . F 4 HOH A 129 629 272 HOH HOH . F 4 HOH A 130 630 277 HOH HOH . F 4 HOH A 131 631 219 HOH HOH . F 4 HOH A 132 632 90 HOH HOH . F 4 HOH A 133 633 270 HOH HOH . F 4 HOH A 134 634 265 HOH HOH . F 4 HOH A 135 635 51 HOH HOH . F 4 HOH A 136 636 283 HOH HOH . F 4 HOH A 137 637 275 HOH HOH . F 4 HOH A 138 638 160 HOH HOH . F 4 HOH A 139 639 218 HOH HOH . F 4 HOH A 140 640 288 HOH HOH . F 4 HOH A 141 641 191 HOH HOH . F 4 HOH A 142 642 264 HOH HOH . F 4 HOH A 143 643 239 HOH HOH . F 4 HOH A 144 644 179 HOH HOH . F 4 HOH A 145 645 151 HOH HOH . F 4 HOH A 146 646 195 HOH HOH . F 4 HOH A 147 647 166 HOH HOH . F 4 HOH A 148 648 190 HOH HOH . F 4 HOH A 149 649 208 HOH HOH . G 4 HOH B 1 501 198 HOH HOH . G 4 HOH B 2 502 209 HOH HOH . G 4 HOH B 3 503 43 HOH HOH . G 4 HOH B 4 504 126 HOH HOH . G 4 HOH B 5 505 286 HOH HOH . G 4 HOH B 6 506 251 HOH HOH . G 4 HOH B 7 507 152 HOH HOH . G 4 HOH B 8 508 284 HOH HOH . G 4 HOH B 9 509 116 HOH HOH . G 4 HOH B 10 510 73 HOH HOH . G 4 HOH B 11 511 139 HOH HOH . G 4 HOH B 12 512 57 HOH HOH . G 4 HOH B 13 513 174 HOH HOH . G 4 HOH B 14 514 165 HOH HOH . G 4 HOH B 15 515 80 HOH HOH . G 4 HOH B 16 516 176 HOH HOH . G 4 HOH B 17 517 120 HOH HOH . G 4 HOH B 18 518 224 HOH HOH . G 4 HOH B 19 519 135 HOH HOH . G 4 HOH B 20 520 85 HOH HOH . G 4 HOH B 21 521 155 HOH HOH . G 4 HOH B 22 522 88 HOH HOH . G 4 HOH B 23 523 149 HOH HOH . G 4 HOH B 24 524 115 HOH HOH . G 4 HOH B 25 525 111 HOH HOH . G 4 HOH B 26 526 256 HOH HOH . G 4 HOH B 27 527 66 HOH HOH . G 4 HOH B 28 528 258 HOH HOH . G 4 HOH B 29 529 94 HOH HOH . G 4 HOH B 30 530 87 HOH HOH . G 4 HOH B 31 531 180 HOH HOH . G 4 HOH B 32 532 127 HOH HOH . G 4 HOH B 33 533 153 HOH HOH . G 4 HOH B 34 534 65 HOH HOH . G 4 HOH B 35 535 38 HOH HOH . G 4 HOH B 36 536 121 HOH HOH . G 4 HOH B 37 537 124 HOH HOH . G 4 HOH B 38 538 61 HOH HOH . G 4 HOH B 39 539 84 HOH HOH . G 4 HOH B 40 540 142 HOH HOH . G 4 HOH B 41 541 45 HOH HOH . G 4 HOH B 42 542 110 HOH HOH . G 4 HOH B 43 543 214 HOH HOH . G 4 HOH B 44 544 220 HOH HOH . G 4 HOH B 45 545 269 HOH HOH . G 4 HOH B 46 546 252 HOH HOH . G 4 HOH B 47 547 154 HOH HOH . G 4 HOH B 48 548 234 HOH HOH . G 4 HOH B 49 549 213 HOH HOH . G 4 HOH B 50 550 246 HOH HOH . G 4 HOH B 51 551 36 HOH HOH . G 4 HOH B 52 552 102 HOH HOH . G 4 HOH B 53 553 123 HOH HOH . G 4 HOH B 54 554 285 HOH HOH . G 4 HOH B 55 555 20 HOH HOH . G 4 HOH B 56 556 144 HOH HOH . G 4 HOH B 57 557 100 HOH HOH . G 4 HOH B 58 558 273 HOH HOH . G 4 HOH B 59 559 172 HOH HOH . G 4 HOH B 60 560 108 HOH HOH . G 4 HOH B 61 561 70 HOH HOH . G 4 HOH B 62 562 103 HOH HOH . G 4 HOH B 63 563 59 HOH HOH . G 4 HOH B 64 564 222 HOH HOH . G 4 HOH B 65 565 17 HOH HOH . G 4 HOH B 66 566 114 HOH HOH . G 4 HOH B 67 567 175 HOH HOH . G 4 HOH B 68 568 227 HOH HOH . G 4 HOH B 69 569 201 HOH HOH . G 4 HOH B 70 570 76 HOH HOH . G 4 HOH B 71 571 12 HOH HOH . G 4 HOH B 72 572 52 HOH HOH . G 4 HOH B 73 573 237 HOH HOH . G 4 HOH B 74 574 261 HOH HOH . G 4 HOH B 75 575 162 HOH HOH . G 4 HOH B 76 576 185 HOH HOH . G 4 HOH B 77 577 194 HOH HOH . G 4 HOH B 78 578 148 HOH HOH . G 4 HOH B 79 579 125 HOH HOH . G 4 HOH B 80 580 71 HOH HOH . G 4 HOH B 81 581 216 HOH HOH . G 4 HOH B 82 582 16 HOH HOH . G 4 HOH B 83 583 164 HOH HOH . G 4 HOH B 84 584 60 HOH HOH . G 4 HOH B 85 585 44 HOH HOH . G 4 HOH B 86 586 274 HOH HOH . G 4 HOH B 87 587 186 HOH HOH . G 4 HOH B 88 588 232 HOH HOH . G 4 HOH B 89 589 229 HOH HOH . G 4 HOH B 90 590 134 HOH HOH . G 4 HOH B 91 591 157 HOH HOH . G 4 HOH B 92 592 40 HOH HOH . G 4 HOH B 93 593 181 HOH HOH . G 4 HOH B 94 594 35 HOH HOH . G 4 HOH B 95 595 39 HOH HOH . G 4 HOH B 96 596 105 HOH HOH . G 4 HOH B 97 597 143 HOH HOH . G 4 HOH B 98 598 81 HOH HOH . G 4 HOH B 99 599 113 HOH HOH . G 4 HOH B 100 600 245 HOH HOH . G 4 HOH B 101 601 188 HOH HOH . G 4 HOH B 102 602 56 HOH HOH . G 4 HOH B 103 603 263 HOH HOH . G 4 HOH B 104 604 183 HOH HOH . G 4 HOH B 105 605 267 HOH HOH . G 4 HOH B 106 606 262 HOH HOH . G 4 HOH B 107 607 206 HOH HOH . G 4 HOH B 108 608 132 HOH HOH . G 4 HOH B 109 609 280 HOH HOH . G 4 HOH B 110 610 236 HOH HOH . G 4 HOH B 111 611 204 HOH HOH . G 4 HOH B 112 612 83 HOH HOH . G 4 HOH B 113 613 279 HOH HOH . G 4 HOH B 114 614 156 HOH HOH . G 4 HOH B 115 615 146 HOH HOH . G 4 HOH B 116 616 171 HOH HOH . G 4 HOH B 117 617 287 HOH HOH . G 4 HOH B 118 618 225 HOH HOH . G 4 HOH B 119 619 244 HOH HOH . G 4 HOH B 120 620 223 HOH HOH . G 4 HOH B 121 621 24 HOH HOH . G 4 HOH B 122 622 64 HOH HOH . G 4 HOH B 123 623 145 HOH HOH . G 4 HOH B 124 624 271 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N7I . . . D 3 11.244 52.643 -50.157 1 50.01 ? C1 N7I 402 A 1 HETATM 2 O O1 N7I . . . D 3 14.8 48.795 -47.041 1 61.28 ? O1 N7I 402 A 1 HETATM 3 C C2 N7I . . . D 3 7.999 50.304 -47.066 1 28.87 ? C2 N7I 402 A 1 HETATM 4 O O2 N7I . . . D 3 7.643 53.849 -49.047 1 24.17 ? O2 N7I 402 A 1 HETATM 5 C C3 N7I . . . D 3 10.005 53.369 -50.087 1 39.75 ? C3 N7I 402 A 1 HETATM 6 O O3 N7I . . . D 3 8.09 51.552 -47.642 1 37.93 ? O3 N7I 402 A 1 HETATM 7 C C4 N7I . . . D 3 8.925 53.077 -49.205 1 42.79 ? C4 N7I 402 A 1 HETATM 8 C C5 N7I . . . D 3 9.167 51.926 -48.43 1 34.02 ? C5 N7I 402 A 1 HETATM 9 C C6 N7I . . . D 3 10.338 51.146 -48.527 1 45.12 ? C6 N7I 402 A 1 HETATM 10 C C7 N7I . . . D 3 11.383 51.51 -49.357 1 48.67 ? C7 N7I 402 A 1 HETATM 11 C C8 N7I . . . D 3 12.451 50.667 -49.368 1 55.22 ? C8 N7I 402 A 1 HETATM 12 C C9 N7I . . . D 3 13.262 50.456 -48.124 1 64.7 ? C9 N7I 402 A 1 HETATM 13 C C10 N7I . . . D 3 14.436 49.481 -48.208 1 70.65 ? C10 N7I 402 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 13 #