data_5CWU # _model_server_result.job_id RS5jGkpoMpRQBeSBDPw5sw _model_server_result.datetime_utc '2025-03-06 02:22:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1902}' # _entry.id 5CWU # _exptl.entry_id 5CWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.95 _cell.angle_gamma 90.01 _cell.entry_id 5CWU _cell.length_a 65.276 _cell.length_b 65.278 _cell.length_c 155.548 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 PISA monomeric 1 author_and_software_defined_assembly 6 PISA monomeric 1 author_and_software_defined_assembly 7 PISA monomeric 1 author_and_software_defined_assembly 8 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,I,J 1 1 B,K,L 2 1 C,M 3 1 D,N 4 1 E,O 5 1 F 6 1 G,P 7 1 H 8 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 130 A ILE 1574 1_555 A N MSE 131 A MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 131 A MSE 1575 1_555 A N ALA 132 A ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C TYR 214 A TYR 1658 1_555 A N MSE 215 A MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 215 A MSE 1659 1_555 A N ARG 216 A ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C ILE 130 B ILE 1574 1_555 B N MSE 131 B MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C MSE 131 B MSE 1575 1_555 B N ALA 132 B ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C TYR 214 B TYR 1658 1_555 B N MSE 215 B MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 B C MSE 215 B MSE 1659 1_555 B N ARG 216 B ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 C C ILE 130 C ILE 1574 1_555 C N MSE 131 C MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 C C MSE 131 C MSE 1575 1_555 C N ALA 132 C ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 C C TYR 214 C TYR 1658 1_555 C N MSE 215 C MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 C C MSE 215 C MSE 1659 1_555 C N ARG 216 C ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 D C ILE 130 D ILE 1574 1_555 D N MSE 131 D MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 D C MSE 131 D MSE 1575 1_555 D N ALA 132 D ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 D C TYR 214 D TYR 1658 1_555 D N MSE 215 D MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 D C MSE 215 D MSE 1659 1_555 D N ARG 216 D ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 E C ILE 130 E ILE 1574 1_555 E N MSE 131 E MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 E C MSE 131 E MSE 1575 1_555 E N ALA 132 E ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 E C TYR 214 E TYR 1658 1_555 E N MSE 215 E MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 E C MSE 215 E MSE 1659 1_555 E N ARG 216 E ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 F C ILE 130 F ILE 1574 1_555 F N MSE 131 F MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale22 F C MSE 131 F MSE 1575 1_555 F N ALA 132 F ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 F C TYR 214 F TYR 1658 1_555 F N MSE 215 F MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 F C MSE 215 F MSE 1659 1_555 F N ARG 216 F ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale25 G C ILE 130 G ILE 1574 1_555 G N MSE 131 G MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 G C MSE 131 G MSE 1575 1_555 G N ALA 132 G ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 G C TYR 214 G TYR 1658 1_555 G N MSE 215 G MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale28 G C MSE 215 G MSE 1659 1_555 G N ARG 216 G ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 H C ILE 130 H ILE 1574 1_555 H N MSE 131 H MSE 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale30 H C MSE 131 H MSE 1575 1_555 H N ALA 132 H ALA 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 H C TYR 214 H TYR 1658 1_555 H N MSE 215 H MSE 1659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale32 H C MSE 215 H MSE 1659 1_555 H N ARG 216 H ARG 1660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CWU _atom_sites.fract_transf_matrix[1][1] 0.01532 _atom_sites.fract_transf_matrix[1][2] 0.000003 _atom_sites.fract_transf_matrix[1][3] -0.000013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL A 1 1901 2 GOL GOL . J 2 GOL A 1 1902 4 GOL GOL . K 2 GOL B 1 1901 5 GOL GOL . L 2 GOL B 1 1902 8 GOL GOL . M 2 GOL C 1 1901 6 GOL GOL . N 2 GOL D 1 1901 1 GOL GOL . O 2 GOL E 1 1901 3 GOL GOL . P 2 GOL G 1 1901 7 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 14.212 24.365 17.944 1 85.82 ? C1 GOL 1902 A 1 HETATM 2 O O1 GOL . . . J 2 13.024 23.821 18.469 1 91.84 ? O1 GOL 1902 A 1 HETATM 3 C C2 GOL . . . J 2 14.785 23.427 16.888 1 81 ? C2 GOL 1902 A 1 HETATM 4 O O2 GOL . . . J 2 15.849 22.669 17.42 1 76.56 ? O2 GOL 1902 A 1 HETATM 5 C C3 GOL . . . J 2 15.274 24.24 15.696 1 101.26 ? C3 GOL 1902 A 1 HETATM 6 O O3 GOL . . . J 2 16.291 23.534 15.024 1 127.15 ? O3 GOL 1902 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #