data_5CWY # _model_server_result.job_id w4tNtomEVkSpOsZl6ojDhQ _model_server_result.datetime_utc '2024-10-18 12:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5CWY # _exptl.entry_id 5CWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CWY _cell.length_a 58.974 _cell.length_b 58.974 _cell.length_c 263.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 D CD CD . A CD 203 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc2 A NE2 HIS 43 A HIS 43 1_555 C CD CD . A CD 202 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A SG CYS 99 A CYS 99 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A OE1 GLU 128 A GLU 128 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OE1 GLU 130 A GLU 130 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc6 A OE1 GLU 132 A GLU 132 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc7 A NE2 HIS 141 A HIS 141 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc8 A NE2 HIS 145 A HIS 145 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc9 A O GLY 148 A GLY 148 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc10 A OD1 ASP 159 A ASP 159 1_555 G NA NA . A NA 206 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc11 B CD CD . A CD 201 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc12 G NA NA . A NA 206 1_555 H O HOH . A HOH 404 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CWY _atom_sites.fract_transf_matrix[1][1] 0.016957 _atom_sites.fract_transf_matrix[1][2] 0.00979 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 1 CD CD . C 2 CD A 1 202 2 CD CD . D 2 CD A 1 203 3 CD CD . E 3 ACT A 1 204 1 ACT ACT . F 4 4WL A 1 205 1 4WL C83 . G 5 NA A 1 206 1 NA NA . H 6 HOH A 1 301 92 HOH HOH . H 6 HOH A 2 302 110 HOH HOH . H 6 HOH A 3 303 57 HOH HOH . H 6 HOH A 4 304 36 HOH HOH . H 6 HOH A 5 305 25 HOH HOH . H 6 HOH A 6 306 91 HOH HOH . H 6 HOH A 7 307 51 HOH HOH . H 6 HOH A 8 308 103 HOH HOH . H 6 HOH A 9 309 73 HOH HOH . H 6 HOH A 10 310 77 HOH HOH . H 6 HOH A 11 311 16 HOH HOH . H 6 HOH A 12 312 17 HOH HOH . H 6 HOH A 13 313 104 HOH HOH . H 6 HOH A 14 314 15 HOH HOH . H 6 HOH A 15 315 58 HOH HOH . H 6 HOH A 16 316 28 HOH HOH . H 6 HOH A 17 317 42 HOH HOH . H 6 HOH A 18 318 19 HOH HOH . H 6 HOH A 19 319 14 HOH HOH . H 6 HOH A 20 320 21 HOH HOH . H 6 HOH A 21 321 47 HOH HOH . H 6 HOH A 22 322 87 HOH HOH . H 6 HOH A 23 323 60 HOH HOH . H 6 HOH A 24 324 55 HOH HOH . H 6 HOH A 25 325 8 HOH HOH . H 6 HOH A 26 326 9 HOH HOH . H 6 HOH A 27 327 1 HOH HOH . H 6 HOH A 28 328 93 HOH HOH . H 6 HOH A 29 329 83 HOH HOH . H 6 HOH A 30 330 30 HOH HOH . H 6 HOH A 31 331 89 HOH HOH . H 6 HOH A 32 332 56 HOH HOH . H 6 HOH A 33 333 46 HOH HOH . H 6 HOH A 34 334 109 HOH HOH . H 6 HOH A 35 335 84 HOH HOH . H 6 HOH A 36 336 10 HOH HOH . H 6 HOH A 37 337 41 HOH HOH . H 6 HOH A 38 338 39 HOH HOH . H 6 HOH A 39 339 54 HOH HOH . H 6 HOH A 40 340 85 HOH HOH . H 6 HOH A 41 341 53 HOH HOH . H 6 HOH A 42 342 74 HOH HOH . H 6 HOH A 43 343 23 HOH HOH . H 6 HOH A 44 344 35 HOH HOH . H 6 HOH A 45 345 22 HOH HOH . H 6 HOH A 46 346 12 HOH HOH . H 6 HOH A 47 347 71 HOH HOH . H 6 HOH A 48 348 38 HOH HOH . H 6 HOH A 49 349 97 HOH HOH . H 6 HOH A 50 350 76 HOH HOH . H 6 HOH A 51 351 27 HOH HOH . H 6 HOH A 52 352 6 HOH HOH . H 6 HOH A 53 353 26 HOH HOH . H 6 HOH A 54 354 69 HOH HOH . H 6 HOH A 55 355 24 HOH HOH . H 6 HOH A 56 356 88 HOH HOH . H 6 HOH A 57 357 94 HOH HOH . H 6 HOH A 58 358 113 HOH HOH . H 6 HOH A 59 359 65 HOH HOH . H 6 HOH A 60 360 72 HOH HOH . H 6 HOH A 61 361 79 HOH HOH . H 6 HOH A 62 362 20 HOH HOH . H 6 HOH A 63 363 40 HOH HOH . H 6 HOH A 64 364 31 HOH HOH . H 6 HOH A 65 365 67 HOH HOH . H 6 HOH A 66 366 61 HOH HOH . H 6 HOH A 67 367 29 HOH HOH . H 6 HOH A 68 368 70 HOH HOH . H 6 HOH A 69 369 43 HOH HOH . H 6 HOH A 70 370 37 HOH HOH . H 6 HOH A 71 371 63 HOH HOH . H 6 HOH A 72 372 62 HOH HOH . H 6 HOH A 73 373 3 HOH HOH . H 6 HOH A 74 374 108 HOH HOH . H 6 HOH A 75 375 7 HOH HOH . H 6 HOH A 76 376 48 HOH HOH . H 6 HOH A 77 377 2 HOH HOH . H 6 HOH A 78 378 13 HOH HOH . H 6 HOH A 79 379 49 HOH HOH . H 6 HOH A 80 380 34 HOH HOH . H 6 HOH A 81 381 45 HOH HOH . H 6 HOH A 82 382 18 HOH HOH . H 6 HOH A 83 383 101 HOH HOH . H 6 HOH A 84 384 68 HOH HOH . H 6 HOH A 85 385 33 HOH HOH . H 6 HOH A 86 386 52 HOH HOH . H 6 HOH A 87 387 64 HOH HOH . H 6 HOH A 88 388 11 HOH HOH . H 6 HOH A 89 389 5 HOH HOH . H 6 HOH A 90 390 82 HOH HOH . H 6 HOH A 91 391 50 HOH HOH . H 6 HOH A 92 392 75 HOH HOH . H 6 HOH A 93 393 66 HOH HOH . H 6 HOH A 94 394 59 HOH HOH . H 6 HOH A 95 395 99 HOH HOH . H 6 HOH A 96 396 4 HOH HOH . H 6 HOH A 97 397 112 HOH HOH . H 6 HOH A 98 398 111 HOH HOH . H 6 HOH A 99 399 78 HOH HOH . H 6 HOH A 100 400 80 HOH HOH . H 6 HOH A 101 401 95 HOH HOH . H 6 HOH A 102 402 106 HOH HOH . H 6 HOH A 103 403 32 HOH HOH . H 6 HOH A 104 404 100 HOH HOH . H 6 HOH A 105 405 86 HOH HOH . H 6 HOH A 106 406 90 HOH HOH . H 6 HOH A 107 407 105 HOH HOH . H 6 HOH A 108 408 102 HOH HOH . H 6 HOH A 109 409 107 HOH HOH . H 6 HOH A 110 410 44 HOH HOH . H 6 HOH A 111 411 98 HOH HOH . H 6 HOH A 112 412 96 HOH HOH . H 6 HOH A 113 413 81 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.821 _atom_site.Cartn_y -34.018 _atom_site.Cartn_z 1.458 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #