data_5CX3 # _model_server_result.job_id wYb8kK8FwKcVEQmSHm262w _model_server_result.datetime_utc '2024-11-15 10:04:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cx3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 5CX3 # _exptl.entry_id 5CX3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.29 _cell.angle_gamma 90 _cell.entry_id 5CX3 _cell.length_a 35.426 _cell.length_b 115.257 _cell.length_c 73.517 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CX3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I,K,M,O,Q 1 1 B,D,F,H,J,L,N,P 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CX3 _atom_sites.fract_transf_matrix[1][1] 0.028228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006147 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 GOL A 1 201 1 GOL GOL . J 3 GOL D 1 201 2 GOL GOL . K 4 HOH A 1 301 85 HOH HOH . K 4 HOH A 2 302 77 HOH HOH . K 4 HOH A 3 303 87 HOH HOH . K 4 HOH A 4 304 17 HOH HOH . K 4 HOH A 5 305 29 HOH HOH . K 4 HOH A 6 306 9 HOH HOH . K 4 HOH A 7 307 11 HOH HOH . K 4 HOH A 8 308 60 HOH HOH . K 4 HOH A 9 309 5 HOH HOH . K 4 HOH A 10 310 58 HOH HOH . K 4 HOH A 11 311 86 HOH HOH . K 4 HOH A 12 312 88 HOH HOH . K 4 HOH A 13 313 50 HOH HOH . K 4 HOH A 14 314 12 HOH HOH . K 4 HOH A 15 315 4 HOH HOH . K 4 HOH A 16 316 39 HOH HOH . K 4 HOH A 17 317 28 HOH HOH . K 4 HOH A 18 318 65 HOH HOH . K 4 HOH A 19 319 72 HOH HOH . K 4 HOH A 20 320 64 HOH HOH . K 4 HOH A 21 321 18 HOH HOH . K 4 HOH A 22 322 30 HOH HOH . K 4 HOH A 23 323 52 HOH HOH . K 4 HOH A 24 324 31 HOH HOH . K 4 HOH A 25 325 57 HOH HOH . K 4 HOH A 26 326 36 HOH HOH . K 4 HOH A 27 327 37 HOH HOH . K 4 HOH A 28 328 89 HOH HOH . K 4 HOH A 29 329 56 HOH HOH . K 4 HOH A 30 330 81 HOH HOH . K 4 HOH A 31 331 42 HOH HOH . K 4 HOH A 32 332 40 HOH HOH . L 4 HOH B 1 201 15 HOH HOH . L 4 HOH B 2 202 38 HOH HOH . L 4 HOH B 3 203 71 HOH HOH . L 4 HOH B 4 204 2 HOH HOH . L 4 HOH B 5 205 59 HOH HOH . L 4 HOH B 6 206 43 HOH HOH . L 4 HOH B 7 207 54 HOH HOH . L 4 HOH B 8 208 73 HOH HOH . L 4 HOH B 9 209 63 HOH HOH . L 4 HOH B 10 210 74 HOH HOH . L 4 HOH B 11 211 7 HOH HOH . L 4 HOH B 12 212 49 HOH HOH . L 4 HOH B 13 213 25 HOH HOH . L 4 HOH B 14 214 14 HOH HOH . L 4 HOH B 15 215 6 HOH HOH . L 4 HOH B 16 216 22 HOH HOH . L 4 HOH B 17 217 23 HOH HOH . L 4 HOH B 18 218 75 HOH HOH . L 4 HOH B 19 219 53 HOH HOH . L 4 HOH B 20 220 51 HOH HOH . L 4 HOH B 21 221 24 HOH HOH . L 4 HOH B 22 222 13 HOH HOH . L 4 HOH B 23 223 61 HOH HOH . L 4 HOH B 24 224 33 HOH HOH . L 4 HOH B 25 225 41 HOH HOH . L 4 HOH B 26 226 68 HOH HOH . M 4 HOH C 1 201 55 HOH HOH . M 4 HOH C 2 202 79 HOH HOH . M 4 HOH C 3 203 10 HOH HOH . M 4 HOH C 4 204 45 HOH HOH . M 4 HOH C 5 205 44 HOH HOH . M 4 HOH C 6 206 20 HOH HOH . M 4 HOH C 7 207 47 HOH HOH . M 4 HOH C 8 208 67 HOH HOH . M 4 HOH C 9 209 3 HOH HOH . M 4 HOH C 10 210 90 HOH HOH . M 4 HOH C 11 211 82 HOH HOH . M 4 HOH C 12 212 35 HOH HOH . M 4 HOH C 13 213 84 HOH HOH . N 4 HOH D 1 301 16 HOH HOH . N 4 HOH D 2 302 80 HOH HOH . N 4 HOH D 3 303 26 HOH HOH . N 4 HOH D 4 304 62 HOH HOH . N 4 HOH D 5 305 34 HOH HOH . N 4 HOH D 6 306 69 HOH HOH . N 4 HOH D 7 307 70 HOH HOH . N 4 HOH D 8 308 93 HOH HOH . N 4 HOH D 9 309 92 HOH HOH . O 4 HOH E 1 1401 94 HOH HOH . O 4 HOH E 2 1402 76 HOH HOH . O 4 HOH E 3 1403 1 HOH HOH . O 4 HOH E 4 1404 19 HOH HOH . O 4 HOH E 5 1405 95 HOH HOH . O 4 HOH E 6 1406 21 HOH HOH . P 4 HOH F 1 1401 83 HOH HOH . P 4 HOH F 2 1402 46 HOH HOH . P 4 HOH F 3 1403 66 HOH HOH . P 4 HOH F 4 1404 8 HOH HOH . P 4 HOH F 5 1405 78 HOH HOH . Q 4 HOH G 1 1401 27 HOH HOH . Q 4 HOH G 2 1402 91 HOH HOH . Q 4 HOH G 3 1403 32 HOH HOH . Q 4 HOH G 4 1404 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 13.073 -26.631 61.046 1 74.05 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . I 3 13.52 -25.904 59.915 1 77.84 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . I 3 11.723 -26.096 61.529 1 72.77 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . I 3 11.074 -27.07 62.326 1 74.45 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . I 3 11.872 -24.786 62.314 1 63.22 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . I 3 12.213 -23.698 61.469 1 56.11 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #