data_5CX3
#
_model_server_result.job_id            zpxl4fMcWbuvlMype188_Q 
_model_server_result.datetime_utc      '2024-11-15 10:05:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cx3 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":201}' 
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_entry.id    5CX3 
#
_exptl.entry_id    5CX3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.29 
_cell.angle_gamma         90 
_cell.entry_id            5CX3 
_cell.length_a            35.426 
_cell.length_b            115.257 
_cell.length_c            73.517 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CX3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PISA octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K,M,O,Q 1 1 
B,D,F,H,J,L,N,P 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
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_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5CX3 
_atom_sites.fract_transf_matrix[1][1]    0.028228 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006147 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008676 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013921 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 201 1 GOL GOL . 
J 3 GOL D 1 201 2 GOL GOL . 
K 4 HOH A 1 301 85 HOH HOH . 
K 4 HOH A 2 302 77 HOH HOH . 
K 4 HOH A 3 303 87 HOH HOH . 
K 4 HOH A 4 304 17 HOH HOH . 
K 4 HOH A 5 305 29 HOH HOH . 
K 4 HOH A 6 306 9 HOH HOH . 
K 4 HOH A 7 307 11 HOH HOH . 
K 4 HOH A 8 308 60 HOH HOH . 
K 4 HOH A 9 309 5 HOH HOH . 
K 4 HOH A 10 310 58 HOH HOH . 
K 4 HOH A 11 311 86 HOH HOH . 
K 4 HOH A 12 312 88 HOH HOH . 
K 4 HOH A 13 313 50 HOH HOH . 
K 4 HOH A 14 314 12 HOH HOH . 
K 4 HOH A 15 315 4 HOH HOH . 
K 4 HOH A 16 316 39 HOH HOH . 
K 4 HOH A 17 317 28 HOH HOH . 
K 4 HOH A 18 318 65 HOH HOH . 
K 4 HOH A 19 319 72 HOH HOH . 
K 4 HOH A 20 320 64 HOH HOH . 
K 4 HOH A 21 321 18 HOH HOH . 
K 4 HOH A 22 322 30 HOH HOH . 
K 4 HOH A 23 323 52 HOH HOH . 
K 4 HOH A 24 324 31 HOH HOH . 
K 4 HOH A 25 325 57 HOH HOH . 
K 4 HOH A 26 326 36 HOH HOH . 
K 4 HOH A 27 327 37 HOH HOH . 
K 4 HOH A 28 328 89 HOH HOH . 
K 4 HOH A 29 329 56 HOH HOH . 
K 4 HOH A 30 330 81 HOH HOH . 
K 4 HOH A 31 331 42 HOH HOH . 
K 4 HOH A 32 332 40 HOH HOH . 
L 4 HOH B 1 201 15 HOH HOH . 
L 4 HOH B 2 202 38 HOH HOH . 
L 4 HOH B 3 203 71 HOH HOH . 
L 4 HOH B 4 204 2 HOH HOH . 
L 4 HOH B 5 205 59 HOH HOH . 
L 4 HOH B 6 206 43 HOH HOH . 
L 4 HOH B 7 207 54 HOH HOH . 
L 4 HOH B 8 208 73 HOH HOH . 
L 4 HOH B 9 209 63 HOH HOH . 
L 4 HOH B 10 210 74 HOH HOH . 
L 4 HOH B 11 211 7 HOH HOH . 
L 4 HOH B 12 212 49 HOH HOH . 
L 4 HOH B 13 213 25 HOH HOH . 
L 4 HOH B 14 214 14 HOH HOH . 
L 4 HOH B 15 215 6 HOH HOH . 
L 4 HOH B 16 216 22 HOH HOH . 
L 4 HOH B 17 217 23 HOH HOH . 
L 4 HOH B 18 218 75 HOH HOH . 
L 4 HOH B 19 219 53 HOH HOH . 
L 4 HOH B 20 220 51 HOH HOH . 
L 4 HOH B 21 221 24 HOH HOH . 
L 4 HOH B 22 222 13 HOH HOH . 
L 4 HOH B 23 223 61 HOH HOH . 
L 4 HOH B 24 224 33 HOH HOH . 
L 4 HOH B 25 225 41 HOH HOH . 
L 4 HOH B 26 226 68 HOH HOH . 
M 4 HOH C 1 201 55 HOH HOH . 
M 4 HOH C 2 202 79 HOH HOH . 
M 4 HOH C 3 203 10 HOH HOH . 
M 4 HOH C 4 204 45 HOH HOH . 
M 4 HOH C 5 205 44 HOH HOH . 
M 4 HOH C 6 206 20 HOH HOH . 
M 4 HOH C 7 207 47 HOH HOH . 
M 4 HOH C 8 208 67 HOH HOH . 
M 4 HOH C 9 209 3 HOH HOH . 
M 4 HOH C 10 210 90 HOH HOH . 
M 4 HOH C 11 211 82 HOH HOH . 
M 4 HOH C 12 212 35 HOH HOH . 
M 4 HOH C 13 213 84 HOH HOH . 
N 4 HOH D 1 301 16 HOH HOH . 
N 4 HOH D 2 302 80 HOH HOH . 
N 4 HOH D 3 303 26 HOH HOH . 
N 4 HOH D 4 304 62 HOH HOH . 
N 4 HOH D 5 305 34 HOH HOH . 
N 4 HOH D 6 306 69 HOH HOH . 
N 4 HOH D 7 307 70 HOH HOH . 
N 4 HOH D 8 308 93 HOH HOH . 
N 4 HOH D 9 309 92 HOH HOH . 
O 4 HOH E 1 1401 94 HOH HOH . 
O 4 HOH E 2 1402 76 HOH HOH . 
O 4 HOH E 3 1403 1 HOH HOH . 
O 4 HOH E 4 1404 19 HOH HOH . 
O 4 HOH E 5 1405 95 HOH HOH . 
O 4 HOH E 6 1406 21 HOH HOH . 
P 4 HOH F 1 1401 83 HOH HOH . 
P 4 HOH F 2 1402 46 HOH HOH . 
P 4 HOH F 3 1403 66 HOH HOH . 
P 4 HOH F 4 1404 8 HOH HOH . 
P 4 HOH F 5 1405 78 HOH HOH . 
Q 4 HOH G 1 1401 27 HOH HOH . 
Q 4 HOH G 2 1402 91 HOH HOH . 
Q 4 HOH G 3 1403 32 HOH HOH . 
Q 4 HOH G 4 1404 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 31.764 -5.027 47.403 1 102.63 ? C1 GOL 201 D 1 
HETATM 2 O O1 GOL . . . J 3 32.938 -5.438 46.741 1 104.87 ? O1 GOL 201 D 1 
HETATM 3 C C2 GOL . . . J 3 30.585 -5.182 46.45 1 101.31 ? C2 GOL 201 D 1 
HETATM 4 O O2 GOL . . . J 3 30.85 -4.42 45.289 1 94.19 ? O2 GOL 201 D 1 
HETATM 5 C C3 GOL . . . J 3 29.283 -4.739 47.134 1 104.42 ? C3 GOL 201 D 1 
HETATM 6 O O3 GOL . . . J 3 28.355 -5.8 47.271 1 102.01 ? O3 GOL 201 D 1 
HETATM 7 H H11 GOL . . . J 3 31.858 -3.987 47.713 1 123.15 ? H11 GOL 201 D 1 
HETATM 8 H H12 GOL . . . J 3 31.606 -5.638 48.292 1 123.15 ? H12 GOL 201 D 1 
HETATM 9 H HO1 GOL . . . J 3 33.713 -5.282 47.321 1 125.85 ? HO1 GOL 201 D 1 
HETATM 10 H H2 GOL . . . J 3 30.493 -6.235 46.183 1 121.57 ? H2 GOL 201 D 1 
HETATM 11 H HO2 GOL . . . J 3 30.108 -4.52 44.656 1 113.02 ? HO2 GOL 201 D 1 
HETATM 12 H H31 GOL . . . J 3 28.827 -3.939 46.551 1 125.31 ? H31 GOL 201 D 1 
HETATM 13 H H32 GOL . . . J 3 29.515 -4.338 48.12 1 125.31 ? H32 GOL 201 D 1 
HETATM 14 H HO3 GOL . . . J 3 27.742 -5.604 48.01 1 122.41 ? HO3 GOL 201 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
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