data_5CXR
#
_model_server_result.job_id            eRJMampD66X7Swhn4s0rxw 
_model_server_result.datetime_utc      '2024-11-22 21:32:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cxr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5CXR 
#
_exptl.entry_id    5CXR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CXR 
_cell.length_a            87.905 
_cell.length_b            102.451 
_cell.length_c            66.062 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CXR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 46 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 A NE2 HIS 79 A HIS 74 1_555 D MN MN . A MN 303 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc3 A OE1 GLU 85 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc4 A OD2 ASP 113 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc5 A OD1 ASP 113 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc6 A OE2 GLU 124 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc7 A O ILE 125 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc8 B MN MN . A MN 301 1_555 L O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc9 B MN MN . A MN 301 1_555 L O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 L O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc11 C MN MN . A MN 302 1_555 L O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 L O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc13 C MN MN . A MN 302 1_555 L O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 92 n n 
C1 C2 EDO sing 93 n n 
C1 H11 EDO sing 94 n n 
C1 H12 EDO sing 95 n n 
O1 HO1 EDO sing 96 n n 
C2 O2 EDO sing 97 n n 
C2 H21 EDO sing 98 n n 
C2 H22 EDO sing 99 n n 
O2 HO2 EDO sing 100 n n 
#
_atom_sites.entry_id                     5CXR 
_atom_sites.fract_transf_matrix[1][1]    0.011376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009761 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015137 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 301 MN MN . 
C 2 MN A 1 302 302 MN MN . 
D 2 MN A 1 303 1 MN MN . 
E 3 EDO A 1 304 1 EDO EDO . 
F 4 BYZ A 1 305 1 BYZ 4BP . 
G 4 BYZ A 1 306 3 BYZ 4BP . 
H 4 BYZ A 1 307 4 BYZ 4BP . 
I 4 BYZ A 1 308 5 BYZ 4BP . 
J 4 BYZ A 1 309 6 BYZ 4BP . 
K 5 SO4 A 1 310 1 SO4 SO4 . 
L 6 HOH A 1 401 111 HOH HOH . 
L 6 HOH A 2 402 59 HOH HOH . 
L 6 HOH A 3 403 146 HOH HOH . 
L 6 HOH A 4 404 127 HOH HOH . 
L 6 HOH A 5 405 118 HOH HOH . 
L 6 HOH A 6 406 79 HOH HOH . 
L 6 HOH A 7 407 104 HOH HOH . 
L 6 HOH A 8 408 106 HOH HOH . 
L 6 HOH A 9 409 48 HOH HOH . 
L 6 HOH A 10 410 57 HOH HOH . 
L 6 HOH A 11 411 140 HOH HOH . 
L 6 HOH A 12 412 53 HOH HOH . 
L 6 HOH A 13 413 60 HOH HOH . 
L 6 HOH A 14 414 130 HOH HOH . 
L 6 HOH A 15 415 125 HOH HOH . 
L 6 HOH A 16 416 96 HOH HOH . 
L 6 HOH A 17 417 45 HOH HOH . 
L 6 HOH A 18 418 145 HOH HOH . 
L 6 HOH A 19 419 83 HOH HOH . 
L 6 HOH A 20 420 62 HOH HOH . 
L 6 HOH A 21 421 65 HOH HOH . 
L 6 HOH A 22 422 36 HOH HOH . 
L 6 HOH A 23 423 131 HOH HOH . 
L 6 HOH A 24 424 70 HOH HOH . 
L 6 HOH A 25 425 58 HOH HOH . 
L 6 HOH A 26 426 67 HOH HOH . 
L 6 HOH A 27 427 47 HOH HOH . 
L 6 HOH A 28 428 142 HOH HOH . 
L 6 HOH A 29 429 137 HOH HOH . 
L 6 HOH A 30 430 20 HOH HOH . 
L 6 HOH A 31 431 108 HOH HOH . 
L 6 HOH A 32 432 8 HOH HOH . 
L 6 HOH A 33 433 107 HOH HOH . 
L 6 HOH A 34 434 12 HOH HOH . 
L 6 HOH A 35 435 40 HOH HOH . 
L 6 HOH A 36 436 68 HOH HOH . 
L 6 HOH A 37 437 37 HOH HOH . 
L 6 HOH A 38 438 51 HOH HOH . 
L 6 HOH A 39 439 10 HOH HOH . 
L 6 HOH A 40 440 5 HOH HOH . 
L 6 HOH A 41 441 35 HOH HOH . 
L 6 HOH A 42 442 23 HOH HOH . 
L 6 HOH A 43 443 39 HOH HOH . 
L 6 HOH A 44 444 61 HOH HOH . 
L 6 HOH A 45 445 56 HOH HOH . 
L 6 HOH A 46 446 78 HOH HOH . 
L 6 HOH A 47 447 18 HOH HOH . 
L 6 HOH A 48 448 34 HOH HOH . 
L 6 HOH A 49 449 13 HOH HOH . 
L 6 HOH A 50 450 74 HOH HOH . 
L 6 HOH A 51 451 109 HOH HOH . 
L 6 HOH A 52 452 94 HOH HOH . 
L 6 HOH A 53 453 19 HOH HOH . 
L 6 HOH A 54 454 139 HOH HOH . 
L 6 HOH A 55 455 110 HOH HOH . 
L 6 HOH A 56 456 2 HOH HOH . 
L 6 HOH A 57 457 44 HOH HOH . 
L 6 HOH A 58 458 4 HOH HOH . 
L 6 HOH A 59 459 141 HOH HOH . 
L 6 HOH A 60 460 32 HOH HOH . 
L 6 HOH A 61 461 77 HOH HOH . 
L 6 HOH A 62 462 80 HOH HOH . 
L 6 HOH A 63 463 54 HOH HOH . 
L 6 HOH A 64 464 41 HOH HOH . 
L 6 HOH A 65 465 9 HOH HOH . 
L 6 HOH A 66 466 1 HOH HOH . 
L 6 HOH A 67 467 17 HOH HOH . 
L 6 HOH A 68 468 72 HOH HOH . 
L 6 HOH A 69 469 15 HOH HOH . 
L 6 HOH A 70 470 6 HOH HOH . 
L 6 HOH A 71 471 3 HOH HOH . 
L 6 HOH A 72 472 75 HOH HOH . 
L 6 HOH A 73 473 117 HOH HOH . 
L 6 HOH A 74 474 120 HOH HOH . 
L 6 HOH A 75 475 21 HOH HOH . 
L 6 HOH A 76 476 144 HOH HOH . 
L 6 HOH A 77 477 16 HOH HOH . 
L 6 HOH A 78 478 22 HOH HOH . 
L 6 HOH A 79 479 24 HOH HOH . 
L 6 HOH A 80 480 55 HOH HOH . 
L 6 HOH A 81 481 100 HOH HOH . 
L 6 HOH A 82 482 126 HOH HOH . 
L 6 HOH A 83 483 66 HOH HOH . 
L 6 HOH A 84 484 116 HOH HOH . 
L 6 HOH A 85 485 73 HOH HOH . 
L 6 HOH A 86 486 26 HOH HOH . 
L 6 HOH A 87 487 143 HOH HOH . 
L 6 HOH A 88 488 98 HOH HOH . 
L 6 HOH A 89 489 85 HOH HOH . 
L 6 HOH A 90 490 105 HOH HOH . 
L 6 HOH A 91 491 7 HOH HOH . 
L 6 HOH A 92 492 28 HOH HOH . 
L 6 HOH A 93 493 128 HOH HOH . 
L 6 HOH A 94 494 84 HOH HOH . 
L 6 HOH A 95 495 87 HOH HOH . 
L 6 HOH A 96 496 33 HOH HOH . 
L 6 HOH A 97 497 101 HOH HOH . 
L 6 HOH A 98 498 43 HOH HOH . 
L 6 HOH A 99 499 27 HOH HOH . 
L 6 HOH A 100 500 52 HOH HOH . 
L 6 HOH A 101 501 97 HOH HOH . 
L 6 HOH A 102 502 82 HOH HOH . 
L 6 HOH A 103 503 135 HOH HOH . 
L 6 HOH A 104 504 50 HOH HOH . 
L 6 HOH A 105 505 25 HOH HOH . 
L 6 HOH A 106 506 69 HOH HOH . 
L 6 HOH A 107 507 95 HOH HOH . 
L 6 HOH A 108 508 86 HOH HOH . 
L 6 HOH A 109 509 89 HOH HOH . 
L 6 HOH A 110 510 90 HOH HOH . 
L 6 HOH A 111 511 64 HOH HOH . 
L 6 HOH A 112 512 11 HOH HOH . 
L 6 HOH A 113 513 92 HOH HOH . 
L 6 HOH A 114 514 121 HOH HOH . 
L 6 HOH A 115 515 113 HOH HOH . 
L 6 HOH A 116 516 123 HOH HOH . 
L 6 HOH A 117 517 71 HOH HOH . 
L 6 HOH A 118 518 29 HOH HOH . 
L 6 HOH A 119 519 124 HOH HOH . 
L 6 HOH A 120 520 14 HOH HOH . 
L 6 HOH A 121 521 30 HOH HOH . 
L 6 HOH A 122 522 42 HOH HOH . 
L 6 HOH A 123 523 76 HOH HOH . 
L 6 HOH A 124 524 63 HOH HOH . 
L 6 HOH A 125 525 103 HOH HOH . 
L 6 HOH A 126 526 134 HOH HOH . 
L 6 HOH A 127 527 38 HOH HOH . 
L 6 HOH A 128 528 88 HOH HOH . 
L 6 HOH A 129 529 138 HOH HOH . 
L 6 HOH A 130 530 129 HOH HOH . 
L 6 HOH A 131 531 102 HOH HOH . 
L 6 HOH A 132 532 148 HOH HOH . 
L 6 HOH A 133 533 149 HOH HOH . 
L 6 HOH A 134 534 81 HOH HOH . 
L 6 HOH A 135 535 46 HOH HOH . 
L 6 HOH A 136 536 119 HOH HOH . 
L 6 HOH A 137 537 49 HOH HOH . 
L 6 HOH A 138 538 91 HOH HOH . 
L 6 HOH A 139 539 136 HOH HOH . 
L 6 HOH A 140 540 93 HOH HOH . 
L 6 HOH A 141 541 122 HOH HOH . 
L 6 HOH A 142 542 132 HOH HOH . 
L 6 HOH A 143 543 31 HOH HOH . 
L 6 HOH A 144 544 114 HOH HOH . 
L 6 HOH A 145 545 112 HOH HOH . 
L 6 HOH A 146 546 99 HOH HOH . 
L 6 HOH A 147 547 115 HOH HOH . 
L 6 HOH A 148 548 147 HOH HOH . 
L 6 HOH A 149 549 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 14.48 27.473 -13.877 1 62.04 ? C1 EDO 304 A 1 
HETATM 2 O O1 EDO . . . E 3 13.178 27.727 -13.342 1 76.48 ? O1 EDO 304 A 1 
HETATM 3 C C2 EDO . . . E 3 14.936 28.665 -14.708 1 64.82 ? C2 EDO 304 A 1 
HETATM 4 O O2 EDO . . . E 3 16.363 28.661 -14.818 1 65.54 ? O2 EDO 304 A 1 
HETATM 5 H H11 EDO . . . E 3 15.186 27.299 -13.062 1 74.45 ? H11 EDO 304 A 1 
HETATM 6 H H12 EDO . . . E 3 14.454 26.577 -14.501 1 74.45 ? H12 EDO 304 A 1 
HETATM 7 H HO1 EDO . . . E 3 12.892 26.968 -12.816 1 91.77 ? HO1 EDO 304 A 1 
HETATM 8 H H21 EDO . . . E 3 14.606 29.592 -14.234 1 77.78 ? H21 EDO 304 A 1 
HETATM 9 H H22 EDO . . . E 3 14.49 28.613 -15.703 1 77.78 ? H22 EDO 304 A 1 
HETATM 10 H HO2 EDO . . . E 3 16.647 29.419 -15.346 1 78.65 ? HO2 EDO 304 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#