data_5CXU # _model_server_result.job_id 55n1HgJ4ridobfzgdN9aUw _model_server_result.datetime_utc '2024-11-13 04:10:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5CXU # _exptl.entry_id 5CXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CXU _cell.length_a 101.87 _cell.length_b 101.87 _cell.length_c 52.48 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CXU _atom_sites.fract_transf_matrix[1][1] 0.009816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 HOH A 1 401 160 HOH HOH . C 3 HOH A 2 402 99 HOH HOH . C 3 HOH A 3 403 190 HOH HOH . C 3 HOH A 4 404 74 HOH HOH . C 3 HOH A 5 405 92 HOH HOH . C 3 HOH A 6 406 134 HOH HOH . C 3 HOH A 7 407 112 HOH HOH . C 3 HOH A 8 408 104 HOH HOH . C 3 HOH A 9 409 201 HOH HOH . C 3 HOH A 10 410 8 HOH HOH . C 3 HOH A 11 411 129 HOH HOH . C 3 HOH A 12 412 59 HOH HOH . C 3 HOH A 13 413 53 HOH HOH . C 3 HOH A 14 414 17 HOH HOH . C 3 HOH A 15 415 204 HOH HOH . C 3 HOH A 16 416 186 HOH HOH . C 3 HOH A 17 417 66 HOH HOH . C 3 HOH A 18 418 152 HOH HOH . C 3 HOH A 19 419 44 HOH HOH . C 3 HOH A 20 420 156 HOH HOH . C 3 HOH A 21 421 183 HOH HOH . C 3 HOH A 22 422 89 HOH HOH . C 3 HOH A 23 423 97 HOH HOH . C 3 HOH A 24 424 10 HOH HOH . C 3 HOH A 25 425 36 HOH HOH . C 3 HOH A 26 426 119 HOH HOH . C 3 HOH A 27 427 150 HOH HOH . C 3 HOH A 28 428 3 HOH HOH . C 3 HOH A 29 429 79 HOH HOH . C 3 HOH A 30 430 71 HOH HOH . C 3 HOH A 31 431 86 HOH HOH . C 3 HOH A 32 432 4 HOH HOH . C 3 HOH A 33 433 37 HOH HOH . C 3 HOH A 34 434 78 HOH HOH . C 3 HOH A 35 435 15 HOH HOH . C 3 HOH A 36 436 188 HOH HOH . C 3 HOH A 37 437 70 HOH HOH . C 3 HOH A 38 438 115 HOH HOH . C 3 HOH A 39 439 2 HOH HOH . C 3 HOH A 40 440 55 HOH HOH . C 3 HOH A 41 441 47 HOH HOH . C 3 HOH A 42 442 43 HOH HOH . C 3 HOH A 43 443 67 HOH HOH . C 3 HOH A 44 444 113 HOH HOH . C 3 HOH A 45 445 9 HOH HOH . C 3 HOH A 46 446 81 HOH HOH . C 3 HOH A 47 447 12 HOH HOH . C 3 HOH A 48 448 127 HOH HOH . C 3 HOH A 49 449 90 HOH HOH . C 3 HOH A 50 450 19 HOH HOH . C 3 HOH A 51 451 116 HOH HOH . C 3 HOH A 52 452 1 HOH HOH . C 3 HOH A 53 453 158 HOH HOH . C 3 HOH A 54 454 45 HOH HOH . C 3 HOH A 55 455 121 HOH HOH . C 3 HOH A 56 456 57 HOH HOH . C 3 HOH A 57 457 13 HOH HOH . C 3 HOH A 58 458 25 HOH HOH . C 3 HOH A 59 459 38 HOH HOH . C 3 HOH A 60 460 211 HOH HOH . C 3 HOH A 61 461 7 HOH HOH . C 3 HOH A 62 462 93 HOH HOH . C 3 HOH A 63 463 31 HOH HOH . C 3 HOH A 64 464 16 HOH HOH . C 3 HOH A 65 465 14 HOH HOH . C 3 HOH A 66 466 34 HOH HOH . C 3 HOH A 67 467 77 HOH HOH . C 3 HOH A 68 468 182 HOH HOH . C 3 HOH A 69 469 27 HOH HOH . C 3 HOH A 70 470 194 HOH HOH . C 3 HOH A 71 471 157 HOH HOH . C 3 HOH A 72 472 143 HOH HOH . C 3 HOH A 73 473 58 HOH HOH . C 3 HOH A 74 474 83 HOH HOH . C 3 HOH A 75 475 56 HOH HOH . C 3 HOH A 76 476 187 HOH HOH . C 3 HOH A 77 477 120 HOH HOH . C 3 HOH A 78 478 60 HOH HOH . C 3 HOH A 79 479 28 HOH HOH . C 3 HOH A 80 480 80 HOH HOH . C 3 HOH A 81 481 46 HOH HOH . C 3 HOH A 82 482 21 HOH HOH . C 3 HOH A 83 483 124 HOH HOH . C 3 HOH A 84 484 205 HOH HOH . C 3 HOH A 85 485 154 HOH HOH . C 3 HOH A 86 486 133 HOH HOH . C 3 HOH A 87 487 40 HOH HOH . C 3 HOH A 88 488 153 HOH HOH . C 3 HOH A 89 489 48 HOH HOH . C 3 HOH A 90 490 26 HOH HOH . C 3 HOH A 91 491 106 HOH HOH . C 3 HOH A 92 492 42 HOH HOH . C 3 HOH A 93 493 111 HOH HOH . C 3 HOH A 94 494 23 HOH HOH . C 3 HOH A 95 495 35 HOH HOH . C 3 HOH A 96 496 88 HOH HOH . C 3 HOH A 97 497 199 HOH HOH . C 3 HOH A 98 498 215 HOH HOH . C 3 HOH A 99 499 32 HOH HOH . C 3 HOH A 100 500 65 HOH HOH . C 3 HOH A 101 501 109 HOH HOH . C 3 HOH A 102 502 24 HOH HOH . C 3 HOH A 103 503 174 HOH HOH . C 3 HOH A 104 504 82 HOH HOH . C 3 HOH A 105 505 96 HOH HOH . C 3 HOH A 106 506 117 HOH HOH . C 3 HOH A 107 507 49 HOH HOH . C 3 HOH A 108 508 198 HOH HOH . C 3 HOH A 109 509 167 HOH HOH . C 3 HOH A 110 510 30 HOH HOH . C 3 HOH A 111 511 200 HOH HOH . C 3 HOH A 112 512 203 HOH HOH . C 3 HOH A 113 513 54 HOH HOH . C 3 HOH A 114 514 11 HOH HOH . C 3 HOH A 115 515 20 HOH HOH . C 3 HOH A 116 516 18 HOH HOH . C 3 HOH A 117 517 62 HOH HOH . C 3 HOH A 118 518 125 HOH HOH . C 3 HOH A 119 519 61 HOH HOH . C 3 HOH A 120 520 177 HOH HOH . C 3 HOH A 121 521 50 HOH HOH . C 3 HOH A 122 522 72 HOH HOH . C 3 HOH A 123 523 68 HOH HOH . C 3 HOH A 124 524 64 HOH HOH . C 3 HOH A 125 525 213 HOH HOH . C 3 HOH A 126 526 122 HOH HOH . C 3 HOH A 127 527 103 HOH HOH . C 3 HOH A 128 528 95 HOH HOH . C 3 HOH A 129 529 107 HOH HOH . C 3 HOH A 130 530 85 HOH HOH . C 3 HOH A 131 531 5 HOH HOH . C 3 HOH A 132 532 147 HOH HOH . C 3 HOH A 133 533 136 HOH HOH . C 3 HOH A 134 534 105 HOH HOH . C 3 HOH A 135 535 98 HOH HOH . C 3 HOH A 136 536 84 HOH HOH . C 3 HOH A 137 537 52 HOH HOH . C 3 HOH A 138 538 184 HOH HOH . C 3 HOH A 139 539 114 HOH HOH . C 3 HOH A 140 540 87 HOH HOH . C 3 HOH A 141 541 155 HOH HOH . C 3 HOH A 142 542 176 HOH HOH . C 3 HOH A 143 543 144 HOH HOH . C 3 HOH A 144 544 22 HOH HOH . C 3 HOH A 145 545 101 HOH HOH . C 3 HOH A 146 546 108 HOH HOH . C 3 HOH A 147 547 6 HOH HOH . C 3 HOH A 148 548 33 HOH HOH . C 3 HOH A 149 549 171 HOH HOH . C 3 HOH A 150 550 51 HOH HOH . C 3 HOH A 151 551 185 HOH HOH . C 3 HOH A 152 552 63 HOH HOH . C 3 HOH A 153 553 149 HOH HOH . C 3 HOH A 154 554 29 HOH HOH . C 3 HOH A 155 555 41 HOH HOH . C 3 HOH A 156 556 140 HOH HOH . C 3 HOH A 157 557 102 HOH HOH . C 3 HOH A 158 558 139 HOH HOH . C 3 HOH A 159 559 135 HOH HOH . C 3 HOH A 160 560 161 HOH HOH . C 3 HOH A 161 561 128 HOH HOH . C 3 HOH A 162 562 76 HOH HOH . C 3 HOH A 163 563 207 HOH HOH . C 3 HOH A 164 564 163 HOH HOH . C 3 HOH A 165 565 130 HOH HOH . C 3 HOH A 166 566 178 HOH HOH . C 3 HOH A 167 567 75 HOH HOH . C 3 HOH A 168 568 39 HOH HOH . C 3 HOH A 169 569 73 HOH HOH . C 3 HOH A 170 570 197 HOH HOH . C 3 HOH A 171 571 192 HOH HOH . C 3 HOH A 172 572 132 HOH HOH . C 3 HOH A 173 573 146 HOH HOH . C 3 HOH A 174 574 141 HOH HOH . C 3 HOH A 175 575 164 HOH HOH . C 3 HOH A 176 576 191 HOH HOH . C 3 HOH A 177 577 170 HOH HOH . C 3 HOH A 178 578 173 HOH HOH . C 3 HOH A 179 579 162 HOH HOH . C 3 HOH A 180 580 123 HOH HOH . C 3 HOH A 181 581 100 HOH HOH . C 3 HOH A 182 582 180 HOH HOH . C 3 HOH A 183 583 179 HOH HOH . C 3 HOH A 184 584 148 HOH HOH . C 3 HOH A 185 585 195 HOH HOH . C 3 HOH A 186 586 196 HOH HOH . C 3 HOH A 187 587 169 HOH HOH . C 3 HOH A 188 588 175 HOH HOH . C 3 HOH A 189 589 131 HOH HOH . C 3 HOH A 190 590 208 HOH HOH . C 3 HOH A 191 591 166 HOH HOH . C 3 HOH A 192 592 110 HOH HOH . C 3 HOH A 193 593 209 HOH HOH . C 3 HOH A 194 594 206 HOH HOH . C 3 HOH A 195 595 212 HOH HOH . C 3 HOH A 196 596 165 HOH HOH . C 3 HOH A 197 597 69 HOH HOH . C 3 HOH A 198 598 214 HOH HOH . C 3 HOH A 199 599 151 HOH HOH . C 3 HOH A 200 600 94 HOH HOH . C 3 HOH A 201 601 189 HOH HOH . C 3 HOH A 202 602 168 HOH HOH . C 3 HOH A 203 603 181 HOH HOH . C 3 HOH A 204 604 145 HOH HOH . C 3 HOH A 205 605 126 HOH HOH . C 3 HOH A 206 606 138 HOH HOH . C 3 HOH A 207 607 142 HOH HOH . C 3 HOH A 208 608 210 HOH HOH . C 3 HOH A 209 609 202 HOH HOH . C 3 HOH A 210 610 137 HOH HOH . C 3 HOH A 211 611 118 HOH HOH . C 3 HOH A 212 612 91 HOH HOH . C 3 HOH A 213 613 172 HOH HOH . C 3 HOH A 214 614 159 HOH HOH . C 3 HOH A 215 615 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -13.998 29.722 -47.636 1 51.73 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 -14.77 30.626 -46.88 1 58.46 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 -13.255 30.408 -48.786 1 51.11 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 -13.36 31.82 -48.762 1 54.38 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 -11.783 30.076 -48.644 1 39.69 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 -11.183 30.922 -47.707 1 30.85 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #