data_5CXV # _model_server_result.job_id 5bi-wAQEv8QZK-IOKdKubw _model_server_result.datetime_utc '2025-03-03 02:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5CXV # _exptl.entry_id 5CXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.512 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CXV _cell.length_a 58.053 _cell.length_b 72.186 _cell.length_c 175.688 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 123 A CYS 98 1_555 A SG CYS 203 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 440 A CYS 391 1_555 A SG CYS 443 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C19 H22 N O4 S2 1' _chem_comp.formula_weight 392.512 _chem_comp.id 0HK _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2R,4S,5S,7S)-7-{[hydroxy(dithiophen-2-yl)acetyl]oxy}-9,9-dimethyl-3-oxa-9-azoniatricyclo[3.3.1.0~2,4~]nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Tiotropium # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S44 C43 0HK sing 1 n y S44 C32 0HK sing 2 n y C43 C42 0HK doub 3 n y C6 C7 0HK sing 4 n n C6 C5 0HK sing 5 n n O29 C28 0HK doub 6 n n C7 C8 0HK sing 7 n n C7 N2 0HK sing 8 n n C42 C41 0HK sing 9 n y C32 C41 0HK doub 10 n y C32 C30 0HK sing 11 n n O33 C30 0HK sing 12 n n C8 O10 0HK sing 13 n n C8 C9 0HK sing 14 n n C28 C30 0HK sing 15 n n C28 O11 0HK sing 16 n n C30 C31 0HK sing 17 n n C12 N2 0HK sing 18 n n C1 N2 0HK sing 19 n n N2 C3 0HK sing 20 n n O10 C9 0HK sing 21 n n C5 O11 0HK sing 22 n n C5 C4 0HK sing 23 n n C9 C3 0HK sing 24 n n C3 C4 0HK sing 25 n n C31 S37 0HK sing 26 n y C31 C34 0HK doub 27 n y S37 C36 0HK sing 28 n y C34 C35 0HK sing 29 n y C35 C36 0HK doub 30 n y C34 H1 0HK sing 31 n n C35 H2 0HK sing 32 n n C36 H3 0HK sing 33 n n C41 H4 0HK sing 34 n n C42 H5 0HK sing 35 n n C43 H6 0HK sing 36 n n O33 H7 0HK sing 37 n n C1 H8 0HK sing 38 n n C1 H9 0HK sing 39 n n C1 H10 0HK sing 40 n n C3 H11 0HK sing 41 n n C4 H12 0HK sing 42 n n C4 H13 0HK sing 43 n n C5 H14 0HK sing 44 n n C6 H15 0HK sing 45 n n C6 H16 0HK sing 46 n n C7 H17 0HK sing 47 n n C8 H18 0HK sing 48 n n C9 H19 0HK sing 49 n n C12 H20 0HK sing 50 n n C12 H21 0HK sing 51 n n C12 H22 0HK sing 52 n n # _atom_sites.entry_id 5CXV _atom_sites.fract_transf_matrix[1][1] 0.017226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 0HK A 1 501 501 0HK 0HK . D 4 Y01 A 1 502 502 Y01 Y01 . E 5 EDO A 1 503 503 EDO EDO . F 6 PGE A 1 504 504 PGE PGE . G 5 EDO A 1 505 505 EDO EDO . H 7 GOL A 1 506 506 GOL GOL . I 5 EDO A 1 507 507 EDO EDO . J 8 HOH A 1 601 604 HOH HOH . J 8 HOH A 2 602 602 HOH HOH . J 8 HOH A 3 603 601 HOH HOH . J 8 HOH A 4 604 603 HOH HOH . J 8 HOH A 5 605 605 HOH HOH . J 8 HOH A 6 606 606 HOH HOH . K 8 HOH C 1 101 101 HOH HOH . K 8 HOH C 2 102 102 HOH HOH . K 8 HOH C 3 103 103 HOH HOH . K 8 HOH C 4 104 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C28 0HK . . . C 3 -13.804 -13.946 38.703 1 66.46 ? C28 0HK 501 A 1 HETATM 2 O O29 0HK . . . C 3 -14.413 -13.531 39.648 1 65.91 ? O29 0HK 501 A 1 HETATM 3 C C31 0HK . . . C 3 -13.625 -15.879 36.959 1 72.97 ? C31 0HK 501 A 1 HETATM 4 C C32 0HK . . . C 3 -12.45 -16.094 39.097 1 73.73 ? C32 0HK 501 A 1 HETATM 5 C C34 0HK . . . C 3 -13.441 -15.075 35.848 1 73.59 ? C34 0HK 501 A 1 HETATM 6 C C35 0HK . . . C 3 -13.469 -15.8 34.647 1 75.69 ? C35 0HK 501 A 1 HETATM 7 C C36 0HK . . . C 3 -13.666 -17.114 34.841 1 76.17 ? C36 0HK 501 A 1 HETATM 8 C C41 0HK . . . C 3 -11.18 -16.35 38.534 1 73.55 ? C41 0HK 501 A 1 HETATM 9 C C42 0HK . . . C 3 -10.274 -16.891 39.471 1 74.76 ? C42 0HK 501 A 1 HETATM 10 C C43 0HK . . . C 3 -10.822 -17.046 40.691 1 75.96 ? C43 0HK 501 A 1 HETATM 11 O O10 0HK . . . C 3 -8.478 -13.113 38.745 1 59.16 ? O10 0HK 501 A 1 HETATM 12 O O11 0HK . . . C 3 -12.636 -13.449 38.279 1 62.49 ? O11 0HK 501 A 1 HETATM 13 O O33 0HK . . . C 3 -14.845 -16.03 39.017 1 69.2 ? O33 0HK 501 A 1 HETATM 14 S S37 0HK . . . C 3 -13.821 -17.511 36.482 1 76.69 ? S37 0HK 501 A 1 HETATM 15 S S44 0HK . . . C 3 -12.46 -16.543 40.755 1 76.8 ? S44 0HK 501 A 1 HETATM 16 C C1 0HK . . . C 3 -10.304 -9.36 38.433 1 57.76 ? C1 0HK 501 A 1 HETATM 17 C C3 0HK . . . C 3 -10.042 -11.593 37.447 1 58.82 ? C3 0HK 501 A 1 HETATM 18 C C4 0HK . . . C 3 -11.56 -11.64 37.145 1 59.02 ? C4 0HK 501 A 1 HETATM 19 C C5 0HK . . . C 3 -12.42 -12.004 38.365 1 60.38 ? C5 0HK 501 A 1 HETATM 20 C C6 0HK . . . C 3 -11.818 -11.703 39.745 1 59.07 ? C6 0HK 501 A 1 HETATM 21 C C7 0HK . . . C 3 -10.284 -11.635 39.743 1 57.82 ? C7 0HK 501 A 1 HETATM 22 C C8 0HK . . . C 3 -9.786 -13.017 39.34 1 58.55 ? C8 0HK 501 A 1 HETATM 23 C C9 0HK . . . C 3 -9.636 -12.993 37.899 1 58.6 ? C9 0HK 501 A 1 HETATM 24 C C12 0HK . . . C 3 -8.24 -10.406 38.649 1 55.93 ? C12 0HK 501 A 1 HETATM 25 C C30 0HK . . . C 3 -13.678 -15.473 38.431 1 70.91 ? C30 0HK 501 A 1 HETATM 26 N N2 0HK . . . C 3 -9.707 -10.746 38.531 1 57.75 ? N2 0HK 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 917 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #