data_5CXV
#
_model_server_result.job_id            297MHssKuPRVoA7n4oGDgg 
_model_server_result.datetime_utc      '2025-03-03 02:35:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cxv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5CXV 
#
_exptl.entry_id    5CXV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CXV 
_cell.length_a            58.053 
_cell.length_b            72.186 
_cell.length_c            175.688 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CXV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 A CYS 98 1_555 A SG CYS 203 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 440 A CYS 391 1_555 A SG CYS 443 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 473 n n 
CBA CAB Y01 sing 474 n n 
CBA CAN Y01 sing 475 n n 
CAN CAJ Y01 sing 476 n n 
CAJ CAO Y01 sing 477 n n 
CAO CBB Y01 sing 478 n n 
CBB CAC Y01 sing 479 n n 
CBB CBE Y01 sing 480 n n 
CBE CAP Y01 sing 481 n n 
CBE CBI Y01 sing 482 n n 
CAP CAQ Y01 sing 483 n n 
CAQ CBG Y01 sing 484 n n 
CBG CBI Y01 sing 485 n n 
CBG CBD Y01 sing 486 n n 
CBI CAE Y01 sing 487 n n 
CBI CAU Y01 sing 488 n n 
CAU CAS Y01 sing 489 n n 
CAS CBF Y01 sing 490 n n 
CBF CBD Y01 sing 491 n n 
CBF CBH Y01 sing 492 n n 
CBD CAK Y01 sing 493 n n 
CAK CAI Y01 sing 494 n n 
CAI CAZ Y01 doub 495 n n 
CAZ CAV Y01 sing 496 n n 
CAZ CBH Y01 sing 497 n n 
CAV CBC Y01 sing 498 n n 
CBH CAD Y01 sing 499 n n 
CBH CAT Y01 sing 500 n n 
CAT CAR Y01 sing 501 n n 
CAR CBC Y01 sing 502 n n 
CBC OAW Y01 sing 503 n n 
OAW CAY Y01 sing 504 n n 
CAY OAG Y01 doub 505 n n 
CAY CAM Y01 sing 506 n n 
CAM CAL Y01 sing 507 n n 
CAL CAX Y01 sing 508 n n 
CAX OAH Y01 sing 509 n n 
CAX OAF Y01 doub 510 n n 
CAA HAA1 Y01 sing 511 n n 
CAA HAA2 Y01 sing 512 n n 
CAA HAA3 Y01 sing 513 n n 
CBA HBA Y01 sing 514 n n 
CAB HAB1 Y01 sing 515 n n 
CAB HAB2 Y01 sing 516 n n 
CAB HAB3 Y01 sing 517 n n 
CAN HAN1 Y01 sing 518 n n 
CAN HAN2 Y01 sing 519 n n 
CAJ HAJ1 Y01 sing 520 n n 
CAJ HAJ2 Y01 sing 521 n n 
CAO HAO1 Y01 sing 522 n n 
CAO HAO2 Y01 sing 523 n n 
CBB HBB Y01 sing 524 n n 
CAC HAC1 Y01 sing 525 n n 
CAC HAC2 Y01 sing 526 n n 
CAC HAC3 Y01 sing 527 n n 
CBE HBE Y01 sing 528 n n 
CAP HAP1 Y01 sing 529 n n 
CAP HAP2 Y01 sing 530 n n 
CAQ HAQ1 Y01 sing 531 n n 
CAQ HAQ2 Y01 sing 532 n n 
CBG HBG Y01 sing 533 n n 
CBD HBD Y01 sing 534 n n 
CAE HAE1 Y01 sing 535 n n 
CAE HAE2 Y01 sing 536 n n 
CAE HAE3 Y01 sing 537 n n 
CAU HAU1 Y01 sing 538 n n 
CAU HAU2 Y01 sing 539 n n 
CAS HAS1 Y01 sing 540 n n 
CAS HAS2 Y01 sing 541 n n 
CBF HBF Y01 sing 542 n n 
CAK HAK1 Y01 sing 543 n n 
CAK HAK2 Y01 sing 544 n n 
CAI HAI Y01 sing 545 n n 
CAV HAV1 Y01 sing 546 n n 
CAV HAV2 Y01 sing 547 n n 
CBC HBC Y01 sing 548 n n 
CAD HAD1 Y01 sing 549 n n 
CAD HAD2 Y01 sing 550 n n 
CAD HAD3 Y01 sing 551 n n 
CAT HAT1 Y01 sing 552 n n 
CAT HAT2 Y01 sing 553 n n 
CAR HAR1 Y01 sing 554 n n 
CAR HAR2 Y01 sing 555 n n 
CAM HAM1 Y01 sing 556 n n 
CAM HAM2 Y01 sing 557 n n 
CAL HAL1 Y01 sing 558 n n 
CAL HAL2 Y01 sing 559 n n 
OAH HAH Y01 sing 560 n n 
#
_atom_sites.entry_id                     5CXV 
_atom_sites.fract_transf_matrix[1][1]    0.017226 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005692 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 0HK A 1 501 501 0HK 0HK . 
D 4 Y01 A 1 502 502 Y01 Y01 . 
E 5 EDO A 1 503 503 EDO EDO . 
F 6 PGE A 1 504 504 PGE PGE . 
G 5 EDO A 1 505 505 EDO EDO . 
H 7 GOL A 1 506 506 GOL GOL . 
I 5 EDO A 1 507 507 EDO EDO . 
J 8 HOH A 1 601 604 HOH HOH . 
J 8 HOH A 2 602 602 HOH HOH . 
J 8 HOH A 3 603 601 HOH HOH . 
J 8 HOH A 4 604 603 HOH HOH . 
J 8 HOH A 5 605 605 HOH HOH . 
J 8 HOH A 6 606 606 HOH HOH . 
K 8 HOH C 1 101 101 HOH HOH . 
K 8 HOH C 2 102 102 HOH HOH . 
K 8 HOH C 3 103 103 HOH HOH . 
K 8 HOH C 4 104 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . D 4 2.456 -18.269 42.533 1 68.81 ? CAA Y01 502 A 1 
HETATM 2 C CBA Y01 . . . D 4 3.473 -17.572 43.43 1 69.46 ? CBA Y01 502 A 1 
HETATM 3 C CAB Y01 . . . D 4 4.044 -16.347 42.723 1 70.52 ? CAB Y01 502 A 1 
HETATM 4 C CAN Y01 . . . D 4 2.869 -17.186 44.778 1 69.82 ? CAN Y01 502 A 1 
HETATM 5 C CAJ Y01 . . . D 4 3.088 -18.262 45.839 1 69.82 ? CAJ Y01 502 A 1 
HETATM 6 C CAO Y01 . . . D 4 3.589 -17.662 47.152 1 69.3 ? CAO Y01 502 A 1 
HETATM 7 C CBB Y01 . . . D 4 3.615 -18.665 48.313 1 70.15 ? CBB Y01 502 A 1 
HETATM 8 C CAC Y01 . . . D 4 4.885 -19.511 48.168 1 70.41 ? CAC Y01 502 A 1 
HETATM 9 C CBE Y01 . . . D 4 3.463 -17.963 49.695 1 70.43 ? CBE Y01 502 A 1 
HETATM 10 C CAP Y01 . . . D 4 2.249 -17.008 49.759 1 69.64 ? CAP Y01 502 A 1 
HETATM 11 C CAQ Y01 . . . D 4 1.739 -16.978 51.199 1 69.78 ? CAQ Y01 502 A 1 
HETATM 12 C CBG Y01 . . . D 4 2.864 -17.678 51.966 1 71.08 ? CBG Y01 502 A 1 
HETATM 13 C CBI Y01 . . . D 4 3.405 -18.764 51.02 1 70.91 ? CBI Y01 502 A 1 
HETATM 14 C CAE Y01 . . . D 4 2.548 -20.054 50.927 1 70.3 ? CAE Y01 502 A 1 
HETATM 15 C CAU Y01 . . . D 4 4.794 -19.116 51.586 1 70.91 ? CAU Y01 502 A 1 
HETATM 16 C CAS Y01 . . . D 4 4.782 -19.553 53.065 1 71.71 ? CAS Y01 502 A 1 
HETATM 17 C CBF Y01 . . . D 4 4.004 -18.619 54.036 1 72.59 ? CBF Y01 502 A 1 
HETATM 18 C CBD Y01 . . . D 4 2.666 -18.094 53.444 1 71.49 ? CBD Y01 502 A 1 
HETATM 19 C CAK Y01 . . . D 4 2.062 -16.99 54.323 1 72.06 ? CAK Y01 502 A 1 
HETATM 20 C CAI Y01 . . . D 4 2.223 -17.263 55.818 1 73.64 ? CAI Y01 502 A 1 
HETATM 21 C CAZ Y01 . . . D 4 3.028 -18.211 56.356 1 74.51 ? CAZ Y01 502 A 1 
HETATM 22 C CAV Y01 . . . D 4 3.065 -18.317 57.879 1 75.35 ? CAV Y01 502 A 1 
HETATM 23 C CBH Y01 . . . D 4 3.871 -19.157 55.491 1 74.46 ? CBH Y01 502 A 1 
HETATM 24 C CAD Y01 . . . D 4 3.213 -20.551 55.527 1 74.36 ? CAD Y01 502 A 1 
HETATM 25 C CAT Y01 . . . D 4 5.285 -19.233 56.112 1 74.61 ? CAT Y01 502 A 1 
HETATM 26 C CAR Y01 . . . D 4 5.344 -19.363 57.642 1 76.26 ? CAR Y01 502 A 1 
HETATM 27 C CBC Y01 . . . D 4 4.521 -18.288 58.361 1 77.25 ? CBC Y01 502 A 1 
HETATM 28 O OAW Y01 . . . D 4 4.595 -18.492 59.779 1 80.56 ? OAW Y01 502 A 1 
HETATM 29 C CAY Y01 . . . D 4 5.627 -17.725 60.488 1 83.62 ? CAY Y01 502 A 1 
HETATM 30 O OAG Y01 . . . D 4 6.451 -17.053 59.875 1 83.86 ? OAG Y01 502 A 1 
HETATM 31 C CAM Y01 . . . D 4 5.66 -17.76 62.002 1 85.27 ? CAM Y01 502 A 1 
HETATM 32 C CAL Y01 . . . D 4 6.922 -18.448 62.53 1 88.81 ? CAL Y01 502 A 1 
HETATM 33 C CAX Y01 . . . D 4 8.158 -17.568 62.451 1 91.61 ? CAX Y01 502 A 1 
HETATM 34 O OAH Y01 . . . D 4 8.057 -16.32 62.559 1 92.75 ? OAH Y01 502 A 1 
HETATM 35 O OAF Y01 . . . D 4 9.264 -18.132 62.281 1 92.7 ? OAF Y01 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           35 
#