data_5CXZ # _model_server_result.job_id RCUnYLdFTKi_tKgY8ovxAQ _model_server_result.datetime_utc '2024-12-22 01:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 5CXZ # _exptl.entry_id 5CXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.419 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{7-[4-(dimethylamino)phenyl]-1,6-naphthyridin-5-yl}propane-1,3-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CXZ _cell.length_a 40.08 _cell.length_b 87.98 _cell.length_c 88.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H23 N5' _chem_comp.formula_weight 321.419 _chem_comp.id 55U _chem_comp.mon_nstd_flag . _chem_comp.name N-{7-[4-(dimethylamino)phenyl]-1,6-naphthyridin-5-yl}propane-1,3-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 55U sing 1 n n C20 N19 55U sing 2 n n C21 C22 55U sing 3 n n N19 C18 55U sing 4 n n N23 C22 55U sing 5 n n C18 N24 55U doub 6 n y C18 C17 55U sing 7 n y N24 C10 55U sing 8 n y C16 C17 55U doub 9 n y C16 C15 55U sing 10 n y C06 C05 55U doub 11 n y C06 C07 55U sing 12 n y C17 C12 55U sing 13 n y C05 C04 55U sing 14 n y C01 N02 55U sing 15 n n C10 C07 55U sing 16 n n C10 C11 55U doub 17 n y C15 C14 55U doub 18 n y C07 C08 55U doub 19 n y C04 N02 55U sing 20 n n C04 C09 55U doub 21 n y C12 C11 55U sing 22 n y C12 N13 55U doub 23 n y N02 C03 55U sing 24 n n C08 C09 55U sing 25 n y C14 N13 55U sing 26 n y C15 H1 55U sing 27 n n C20 H2 55U sing 28 n n C20 H3 55U sing 29 n n C21 H4 55U sing 30 n n C21 H5 55U sing 31 n n C22 H6 55U sing 32 n n C22 H7 55U sing 33 n n C01 H8 55U sing 34 n n C01 H9 55U sing 35 n n C01 H10 55U sing 36 n n C03 H11 55U sing 37 n n C03 H12 55U sing 38 n n C03 H13 55U sing 39 n n C05 H14 55U sing 40 n n C06 H15 55U sing 41 n n C08 H16 55U sing 42 n n C09 H17 55U sing 43 n n C11 H18 55U sing 44 n n C14 H19 55U sing 45 n n C16 H20 55U sing 46 n n N19 H21 55U sing 47 n n N23 H22 55U sing 48 n n N23 H23 55U sing 49 n n # _atom_sites.entry_id 5CXZ _atom_sites.fract_transf_matrix[1][1] 0.02495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011366 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 1 GOL GOL . C 3 CL A 1 702 1 CL CL . D 4 55U A 1 703 1 55U LIG . E 5 HOH A 1 801 62 HOH HOH . E 5 HOH A 2 802 95 HOH HOH . E 5 HOH A 3 803 5 HOH HOH . E 5 HOH A 4 804 41 HOH HOH . E 5 HOH A 5 805 17 HOH HOH . E 5 HOH A 6 806 104 HOH HOH . E 5 HOH A 7 807 72 HOH HOH . E 5 HOH A 8 808 27 HOH HOH . E 5 HOH A 9 809 43 HOH HOH . E 5 HOH A 10 810 112 HOH HOH . E 5 HOH A 11 811 51 HOH HOH . E 5 HOH A 12 812 90 HOH HOH . E 5 HOH A 13 813 121 HOH HOH . E 5 HOH A 14 814 23 HOH HOH . E 5 HOH A 15 815 10 HOH HOH . E 5 HOH A 16 816 126 HOH HOH . E 5 HOH A 17 817 116 HOH HOH . E 5 HOH A 18 818 11 HOH HOH . E 5 HOH A 19 819 77 HOH HOH . E 5 HOH A 20 820 96 HOH HOH . E 5 HOH A 21 821 24 HOH HOH . E 5 HOH A 22 822 15 HOH HOH . E 5 HOH A 23 823 56 HOH HOH . E 5 HOH A 24 824 103 HOH HOH . E 5 HOH A 25 825 94 HOH HOH . E 5 HOH A 26 826 114 HOH HOH . E 5 HOH A 27 827 3 HOH HOH . E 5 HOH A 28 828 31 HOH HOH . E 5 HOH A 29 829 26 HOH HOH . E 5 HOH A 30 830 135 HOH HOH . E 5 HOH A 31 831 6 HOH HOH . E 5 HOH A 32 832 119 HOH HOH . E 5 HOH A 33 833 128 HOH HOH . E 5 HOH A 34 834 49 HOH HOH . E 5 HOH A 35 835 61 HOH HOH . E 5 HOH A 36 836 130 HOH HOH . E 5 HOH A 37 837 106 HOH HOH . E 5 HOH A 38 838 136 HOH HOH . E 5 HOH A 39 839 120 HOH HOH . E 5 HOH A 40 840 33 HOH HOH . E 5 HOH A 41 841 70 HOH HOH . E 5 HOH A 42 842 137 HOH HOH . E 5 HOH A 43 843 129 HOH HOH . E 5 HOH A 44 844 21 HOH HOH . E 5 HOH A 45 845 64 HOH HOH . E 5 HOH A 46 846 86 HOH HOH . E 5 HOH A 47 847 29 HOH HOH . E 5 HOH A 48 848 133 HOH HOH . E 5 HOH A 49 849 19 HOH HOH . E 5 HOH A 50 850 132 HOH HOH . E 5 HOH A 51 851 99 HOH HOH . E 5 HOH A 52 852 73 HOH HOH . E 5 HOH A 53 853 30 HOH HOH . E 5 HOH A 54 854 66 HOH HOH . E 5 HOH A 55 855 101 HOH HOH . E 5 HOH A 56 856 2 HOH HOH . E 5 HOH A 57 857 105 HOH HOH . E 5 HOH A 58 858 16 HOH HOH . E 5 HOH A 59 859 74 HOH HOH . E 5 HOH A 60 860 59 HOH HOH . E 5 HOH A 61 861 63 HOH HOH . E 5 HOH A 62 862 71 HOH HOH . E 5 HOH A 63 863 36 HOH HOH . E 5 HOH A 64 864 100 HOH HOH . E 5 HOH A 65 865 45 HOH HOH . E 5 HOH A 66 866 108 HOH HOH . E 5 HOH A 67 867 113 HOH HOH . E 5 HOH A 68 868 44 HOH HOH . E 5 HOH A 69 869 52 HOH HOH . E 5 HOH A 70 870 35 HOH HOH . E 5 HOH A 71 871 97 HOH HOH . E 5 HOH A 72 872 47 HOH HOH . E 5 HOH A 73 873 22 HOH HOH . E 5 HOH A 74 874 92 HOH HOH . E 5 HOH A 75 875 34 HOH HOH . E 5 HOH A 76 876 42 HOH HOH . E 5 HOH A 77 877 48 HOH HOH . E 5 HOH A 78 878 60 HOH HOH . E 5 HOH A 79 879 83 HOH HOH . E 5 HOH A 80 880 32 HOH HOH . E 5 HOH A 81 881 1 HOH HOH . E 5 HOH A 82 882 85 HOH HOH . E 5 HOH A 83 883 111 HOH HOH . E 5 HOH A 84 884 54 HOH HOH . E 5 HOH A 85 885 79 HOH HOH . E 5 HOH A 86 886 4 HOH HOH . E 5 HOH A 87 887 102 HOH HOH . E 5 HOH A 88 888 127 HOH HOH . E 5 HOH A 89 889 115 HOH HOH . E 5 HOH A 90 890 91 HOH HOH . E 5 HOH A 91 891 138 HOH HOH . E 5 HOH A 92 892 110 HOH HOH . E 5 HOH A 93 893 69 HOH HOH . E 5 HOH A 94 894 37 HOH HOH . E 5 HOH A 95 895 50 HOH HOH . E 5 HOH A 96 896 39 HOH HOH . E 5 HOH A 97 897 53 HOH HOH . E 5 HOH A 98 898 13 HOH HOH . E 5 HOH A 99 899 87 HOH HOH . E 5 HOH A 100 900 8 HOH HOH . E 5 HOH A 101 901 76 HOH HOH . E 5 HOH A 102 902 123 HOH HOH . E 5 HOH A 103 903 20 HOH HOH . E 5 HOH A 104 904 118 HOH HOH . E 5 HOH A 105 905 55 HOH HOH . E 5 HOH A 106 906 78 HOH HOH . E 5 HOH A 107 907 18 HOH HOH . E 5 HOH A 108 908 82 HOH HOH . E 5 HOH A 109 909 38 HOH HOH . E 5 HOH A 110 910 68 HOH HOH . E 5 HOH A 111 911 117 HOH HOH . E 5 HOH A 112 912 89 HOH HOH . E 5 HOH A 113 913 28 HOH HOH . E 5 HOH A 114 914 9 HOH HOH . E 5 HOH A 115 915 46 HOH HOH . E 5 HOH A 116 916 14 HOH HOH . E 5 HOH A 117 917 40 HOH HOH . E 5 HOH A 118 918 12 HOH HOH . E 5 HOH A 119 919 58 HOH HOH . E 5 HOH A 120 920 84 HOH HOH . E 5 HOH A 121 921 7 HOH HOH . E 5 HOH A 122 922 131 HOH HOH . E 5 HOH A 123 923 134 HOH HOH . E 5 HOH A 124 924 25 HOH HOH . E 5 HOH A 125 925 98 HOH HOH . E 5 HOH A 126 926 109 HOH HOH . E 5 HOH A 127 927 75 HOH HOH . E 5 HOH A 128 928 125 HOH HOH . E 5 HOH A 129 929 107 HOH HOH . E 5 HOH A 130 930 124 HOH HOH . E 5 HOH A 131 931 81 HOH HOH . E 5 HOH A 132 932 57 HOH HOH . E 5 HOH A 133 933 122 HOH HOH . E 5 HOH A 134 934 67 HOH HOH . E 5 HOH A 135 935 93 HOH HOH . E 5 HOH A 136 936 65 HOH HOH . E 5 HOH A 137 937 80 HOH HOH . E 5 HOH A 138 938 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 55U . . . D 4 1.332 -1.059 15.91 1 9.66 ? C10 55U 703 A 1 HETATM 2 C C15 55U . . . D 4 6.189 0.284 15.942 1 13.23 ? C15 55U 703 A 1 HETATM 3 C C17 55U . . . D 4 3.86 0.019 15.37 1 10.93 ? C17 55U 703 A 1 HETATM 4 C C20 55U . . . D 4 1.937 1.962 12.453 1 19.68 ? C20 55U 703 A 1 HETATM 5 C C21 55U . . . D 4 1.071 3.147 12.864 1 21.4 ? C21 55U 703 A 1 HETATM 6 C C22 55U . . . D 4 1.415 3.913 14.138 1 18.88 ? C22 55U 703 A 1 HETATM 7 C C01 55U . . . D 4 -5.116 -2.5 15.843 1 24.99 ? C01 55U 703 A 1 HETATM 8 N N02 55U . . . D 4 -3.996 -2.914 16.679 1 22.41 ? N02 55U 703 A 1 HETATM 9 C C03 55U . . . D 4 -4.296 -3.607 17.926 1 22.61 ? C03 55U 703 A 1 HETATM 10 C C04 55U . . . D 4 -2.627 -2.461 16.39 1 15.54 ? C04 55U 703 A 1 HETATM 11 C C05 55U . . . D 4 -2.345 -1.484 15.407 1 11.64 ? C05 55U 703 A 1 HETATM 12 C C06 55U . . . D 4 -1.028 -0.997 15.273 1 8.11 ? C06 55U 703 A 1 HETATM 13 C C07 55U . . . D 4 0.018 -1.499 16.092 1 8.56 ? C07 55U 703 A 1 HETATM 14 C C08 55U . . . D 4 -0.258 -2.518 17.01 1 11.69 ? C08 55U 703 A 1 HETATM 15 C C09 55U . . . D 4 -1.567 -3.001 17.143 1 14.9 ? C09 55U 703 A 1 HETATM 16 C C11 55U . . . D 4 2.431 -1.346 16.755 1 8.98 ? C11 55U 703 A 1 HETATM 17 C C12 55U . . . D 4 3.689 -0.853 16.439 1 8.57 ? C12 55U 703 A 1 HETATM 18 N N13 55U . . . D 4 4.764 -1.124 17.253 1 7.76 ? N13 55U 703 A 1 HETATM 19 C C14 55U . . . D 4 6.009 -0.574 17.026 1 9.9 ? C14 55U 703 A 1 HETATM 20 C C16 55U . . . D 4 5.125 0.564 15.117 1 13.21 ? C16 55U 703 A 1 HETATM 21 C C18 55U . . . D 4 2.729 0.365 14.616 1 13.71 ? C18 55U 703 A 1 HETATM 22 N N19 55U . . . D 4 2.664 1.269 13.492 1 15.01 ? N19 55U 703 A 1 HETATM 23 N N23 55U . . . D 4 1.142 5.351 14.097 1 18.75 ? N23 55U 703 A 1 HETATM 24 N N24 55U . . . D 4 1.517 -0.187 14.88 1 12.3 ? N24 55U 703 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 476 _model_server_stats.encode_time_ms 68 _model_server_stats.element_count 24 #