data_5CY3 # _model_server_result.job_id scRoyFBHJdbat73czWJYDw _model_server_result.datetime_utc '2024-12-22 01:43:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 5CY3 # _exptl.entry_id 5CY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-[(1R)-1-{[6-(1-methyl-1H-pyrazol-4-yl)-2,1-benzothiazol-4-yl]oxy}ethyl]-1,3-oxazolidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.14 _cell.angle_gamma 90 _cell.entry_id 5CY3 _cell.length_a 41.504 _cell.length_b 37.656 _cell.length_c 90.888 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N4 O3 S' _chem_comp.formula_weight 344.388 _chem_comp.id 55Y _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-[(1R)-1-{[6-(1-methyl-1H-pyrazol-4-yl)-2,1-benzothiazol-4-yl]oxy}ethyl]-1,3-oxazolidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N3 55Y sing 1 n n C14 C13 55Y sing 2 n n C11 N1 55Y sing 3 n n N3 C15 55Y sing 4 n n N1 N2 55Y sing 5 n y N1 C10 55Y sing 6 n y N2 C12 55Y doub 7 n y C10 C9 55Y doub 8 n y C12 C9 55Y sing 9 n y C9 C4 55Y sing 10 n n C13 C1 55Y sing 11 n n C13 O2 55Y sing 12 n n C4 C5 55Y doub 13 n y C4 C3 55Y sing 14 n y C5 C6 55Y sing 15 n y C3 C2 55Y doub 16 n y C1 O 55Y sing 17 n n C1 C 55Y sing 18 n n C15 O2 55Y sing 19 n n C15 O1 55Y doub 20 n n C6 N 55Y doub 21 n y C6 C8 55Y sing 22 n y C2 O 55Y sing 23 n n C2 C8 55Y sing 24 n y N S 55Y sing 25 n y C8 C7 55Y doub 26 n y S C7 55Y sing 27 n y C5 H1 55Y sing 28 n n C7 H2 55Y sing 29 n n C10 H3 55Y sing 30 n n C13 H4 55Y sing 31 n n C1 H6 55Y sing 32 n n C H7 55Y sing 33 n n C H8 55Y sing 34 n n C H9 55Y sing 35 n n C3 H10 55Y sing 36 n n C12 H11 55Y sing 37 n n C11 H12 55Y sing 38 n n C11 H13 55Y sing 39 n n C11 H14 55Y sing 40 n n N3 H5 55Y sing 41 n n C14 H15 55Y sing 42 n n C14 H16 55Y sing 43 n n # _atom_sites.entry_id 5CY3 _atom_sites.fract_transf_matrix[1][1] 0.024094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 55Y A 1 701 1 55Y LIG . C 3 HOH A 1 801 103 HOH HOH . C 3 HOH A 2 802 105 HOH HOH . C 3 HOH A 3 803 138 HOH HOH . C 3 HOH A 4 804 188 HOH HOH . C 3 HOH A 5 805 44 HOH HOH . C 3 HOH A 6 806 129 HOH HOH . C 3 HOH A 7 807 100 HOH HOH . C 3 HOH A 8 808 13 HOH HOH . C 3 HOH A 9 809 37 HOH HOH . C 3 HOH A 10 810 17 HOH HOH . C 3 HOH A 11 811 128 HOH HOH . C 3 HOH A 12 812 23 HOH HOH . C 3 HOH A 13 813 9 HOH HOH . C 3 HOH A 14 814 89 HOH HOH . C 3 HOH A 15 815 149 HOH HOH . C 3 HOH A 16 816 116 HOH HOH . C 3 HOH A 17 817 179 HOH HOH . C 3 HOH A 18 818 91 HOH HOH . C 3 HOH A 19 819 133 HOH HOH . C 3 HOH A 20 820 18 HOH HOH . C 3 HOH A 21 821 3 HOH HOH . C 3 HOH A 22 822 68 HOH HOH . C 3 HOH A 23 823 111 HOH HOH . C 3 HOH A 24 824 135 HOH HOH . C 3 HOH A 25 825 165 HOH HOH . C 3 HOH A 26 826 183 HOH HOH . C 3 HOH A 27 827 174 HOH HOH . C 3 HOH A 28 828 88 HOH HOH . C 3 HOH A 29 829 19 HOH HOH . C 3 HOH A 30 830 10 HOH HOH . C 3 HOH A 31 831 65 HOH HOH . C 3 HOH A 32 832 108 HOH HOH . C 3 HOH A 33 833 171 HOH HOH . C 3 HOH A 34 834 119 HOH HOH . C 3 HOH A 35 835 30 HOH HOH . C 3 HOH A 36 836 50 HOH HOH . C 3 HOH A 37 837 147 HOH HOH . C 3 HOH A 38 838 167 HOH HOH . C 3 HOH A 39 839 45 HOH HOH . C 3 HOH A 40 840 82 HOH HOH . C 3 HOH A 41 841 90 HOH HOH . C 3 HOH A 42 842 191 HOH HOH . C 3 HOH A 43 843 40 HOH HOH . C 3 HOH A 44 844 2 HOH HOH . C 3 HOH A 45 845 132 HOH HOH . C 3 HOH A 46 846 70 HOH HOH . C 3 HOH A 47 847 184 HOH HOH . C 3 HOH A 48 848 60 HOH HOH . C 3 HOH A 49 849 24 HOH HOH . C 3 HOH A 50 850 8 HOH HOH . C 3 HOH A 51 851 117 HOH HOH . C 3 HOH A 52 852 39 HOH HOH . C 3 HOH A 53 853 148 HOH HOH . C 3 HOH A 54 854 187 HOH HOH . C 3 HOH A 55 855 77 HOH HOH . C 3 HOH A 56 856 61 HOH HOH . C 3 HOH A 57 857 168 HOH HOH . C 3 HOH A 58 858 1 HOH HOH . C 3 HOH A 59 859 163 HOH HOH . C 3 HOH A 60 860 84 HOH HOH . C 3 HOH A 61 861 112 HOH HOH . C 3 HOH A 62 862 22 HOH HOH . C 3 HOH A 63 863 152 HOH HOH . C 3 HOH A 64 864 178 HOH HOH . C 3 HOH A 65 865 12 HOH HOH . C 3 HOH A 66 866 25 HOH HOH . C 3 HOH A 67 867 153 HOH HOH . C 3 HOH A 68 868 5 HOH HOH . C 3 HOH A 69 869 102 HOH HOH . C 3 HOH A 70 870 63 HOH HOH . C 3 HOH A 71 871 78 HOH HOH . C 3 HOH A 72 872 140 HOH HOH . C 3 HOH A 73 873 36 HOH HOH . C 3 HOH A 74 874 96 HOH HOH . C 3 HOH A 75 875 20 HOH HOH . C 3 HOH A 76 876 164 HOH HOH . C 3 HOH A 77 877 136 HOH HOH . C 3 HOH A 78 878 83 HOH HOH . C 3 HOH A 79 879 189 HOH HOH . C 3 HOH A 80 880 92 HOH HOH . C 3 HOH A 81 881 182 HOH HOH . C 3 HOH A 82 882 4 HOH HOH . C 3 HOH A 83 883 118 HOH HOH . C 3 HOH A 84 884 66 HOH HOH . C 3 HOH A 85 885 38 HOH HOH . C 3 HOH A 86 886 81 HOH HOH . C 3 HOH A 87 887 14 HOH HOH . C 3 HOH A 88 888 47 HOH HOH . C 3 HOH A 89 889 151 HOH HOH . C 3 HOH A 90 890 74 HOH HOH . C 3 HOH A 91 891 16 HOH HOH . C 3 HOH A 92 892 11 HOH HOH . C 3 HOH A 93 893 139 HOH HOH . C 3 HOH A 94 894 15 HOH HOH . C 3 HOH A 95 895 59 HOH HOH . C 3 HOH A 96 896 185 HOH HOH . C 3 HOH A 97 897 6 HOH HOH . C 3 HOH A 98 898 86 HOH HOH . C 3 HOH A 99 899 71 HOH HOH . C 3 HOH A 100 900 157 HOH HOH . C 3 HOH A 101 901 121 HOH HOH . C 3 HOH A 102 902 51 HOH HOH . C 3 HOH A 103 903 107 HOH HOH . C 3 HOH A 104 904 142 HOH HOH . C 3 HOH A 105 905 29 HOH HOH . C 3 HOH A 106 906 75 HOH HOH . C 3 HOH A 107 907 58 HOH HOH . C 3 HOH A 108 908 48 HOH HOH . C 3 HOH A 109 909 62 HOH HOH . C 3 HOH A 110 910 32 HOH HOH . C 3 HOH A 111 911 46 HOH HOH . C 3 HOH A 112 912 87 HOH HOH . C 3 HOH A 113 913 101 HOH HOH . C 3 HOH A 114 914 146 HOH HOH . C 3 HOH A 115 915 79 HOH HOH . C 3 HOH A 116 916 143 HOH HOH . C 3 HOH A 117 917 52 HOH HOH . C 3 HOH A 118 918 27 HOH HOH . C 3 HOH A 119 919 180 HOH HOH . C 3 HOH A 120 920 43 HOH HOH . C 3 HOH A 121 921 131 HOH HOH . C 3 HOH A 122 922 94 HOH HOH . C 3 HOH A 123 923 21 HOH HOH . C 3 HOH A 124 924 115 HOH HOH . C 3 HOH A 125 925 54 HOH HOH . C 3 HOH A 126 926 93 HOH HOH . C 3 HOH A 127 927 162 HOH HOH . C 3 HOH A 128 928 35 HOH HOH . C 3 HOH A 129 929 69 HOH HOH . C 3 HOH A 130 930 181 HOH HOH . C 3 HOH A 131 931 170 HOH HOH . C 3 HOH A 132 932 76 HOH HOH . C 3 HOH A 133 933 72 HOH HOH . C 3 HOH A 134 934 127 HOH HOH . C 3 HOH A 135 935 154 HOH HOH . C 3 HOH A 136 936 49 HOH HOH . C 3 HOH A 137 937 34 HOH HOH . C 3 HOH A 138 938 177 HOH HOH . C 3 HOH A 139 939 7 HOH HOH . C 3 HOH A 140 940 104 HOH HOH . C 3 HOH A 141 941 57 HOH HOH . C 3 HOH A 142 942 130 HOH HOH . C 3 HOH A 143 943 85 HOH HOH . C 3 HOH A 144 944 33 HOH HOH . C 3 HOH A 145 945 41 HOH HOH . C 3 HOH A 146 946 155 HOH HOH . C 3 HOH A 147 947 126 HOH HOH . C 3 HOH A 148 948 64 HOH HOH . C 3 HOH A 149 949 109 HOH HOH . C 3 HOH A 150 950 31 HOH HOH . C 3 HOH A 151 951 156 HOH HOH . C 3 HOH A 152 952 67 HOH HOH . C 3 HOH A 153 953 55 HOH HOH . C 3 HOH A 154 954 113 HOH HOH . C 3 HOH A 155 955 42 HOH HOH . C 3 HOH A 156 956 56 HOH HOH . C 3 HOH A 157 957 137 HOH HOH . C 3 HOH A 158 958 114 HOH HOH . C 3 HOH A 159 959 176 HOH HOH . C 3 HOH A 160 960 26 HOH HOH . C 3 HOH A 161 961 53 HOH HOH . C 3 HOH A 162 962 161 HOH HOH . C 3 HOH A 163 963 150 HOH HOH . C 3 HOH A 164 964 160 HOH HOH . C 3 HOH A 165 965 99 HOH HOH . C 3 HOH A 166 966 125 HOH HOH . C 3 HOH A 167 967 145 HOH HOH . C 3 HOH A 168 968 80 HOH HOH . C 3 HOH A 169 969 97 HOH HOH . C 3 HOH A 170 970 166 HOH HOH . C 3 HOH A 171 971 193 HOH HOH . C 3 HOH A 172 972 28 HOH HOH . C 3 HOH A 173 973 158 HOH HOH . C 3 HOH A 174 974 186 HOH HOH . C 3 HOH A 175 975 169 HOH HOH . C 3 HOH A 176 976 141 HOH HOH . C 3 HOH A 177 977 192 HOH HOH . C 3 HOH A 178 978 124 HOH HOH . C 3 HOH A 179 979 134 HOH HOH . C 3 HOH A 180 980 173 HOH HOH . C 3 HOH A 181 981 175 HOH HOH . C 3 HOH A 182 982 159 HOH HOH . C 3 HOH A 183 983 110 HOH HOH . C 3 HOH A 184 984 95 HOH HOH . C 3 HOH A 185 985 98 HOH HOH . C 3 HOH A 186 986 172 HOH HOH . C 3 HOH A 187 987 120 HOH HOH . C 3 HOH A 188 988 106 HOH HOH . C 3 HOH A 189 989 144 HOH HOH . C 3 HOH A 190 990 122 HOH HOH . C 3 HOH A 191 991 73 HOH HOH . C 3 HOH A 192 992 123 HOH HOH . C 3 HOH A 193 993 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 55Y . . . B 2 -9.028 -16.572 -17.242 1 20.12 ? N1 55Y 701 A 1 HETATM 2 N N3 55Y . . . B 2 -1.578 -10.481 -17.372 1 15.06 ? N3 55Y 701 A 1 HETATM 3 C C4 55Y . . . B 2 -7.041 -13.707 -16.425 1 14.88 ? C4 55Y 701 A 1 HETATM 4 C C5 55Y . . . B 2 -7.753 -12.612 -16.324 1 17.32 ? C5 55Y 701 A 1 HETATM 5 C C6 55Y . . . B 2 -7.131 -11.367 -15.99 1 16.3 ? C6 55Y 701 A 1 HETATM 6 C C7 55Y . . . B 2 -5.396 -10.009 -15.445 1 16.01 ? C7 55Y 701 A 1 HETATM 7 C C8 55Y . . . B 2 -5.74 -11.311 -15.771 1 14.81 ? C8 55Y 701 A 1 HETATM 8 C C10 55Y . . . B 2 -8.944 -15.26 -17.019 1 18.19 ? C10 55Y 701 A 1 HETATM 9 C C13 55Y . . . B 2 -1.454 -12.598 -16.535 1 13.91 ? C13 55Y 701 A 1 HETATM 10 C C15 55Y . . . B 2 -1.209 -10.462 -16.058 1 16.98 ? C15 55Y 701 A 1 HETATM 11 O O1 55Y . . . B 2 -1.054 -9.52 -15.408 1 21.11 ? O1 55Y 701 A 1 HETATM 12 C C14 55Y . . . B 2 -1.728 -11.757 -17.818 1 15.64 ? C14 55Y 701 A 1 HETATM 13 O O2 55Y . . . B 2 -1.117 -11.681 -15.579 1 14.92 ? O2 55Y 701 A 1 HETATM 14 C C1 55Y . . . B 2 -2.784 -13.323 -16.117 1 15.29 ? C1 55Y 701 A 1 HETATM 15 C C 55Y . . . B 2 -2.474 -14.188 -14.958 1 15.85 ? C 55Y 701 A 1 HETATM 16 O O 55Y . . . B 2 -3.654 -12.325 -15.8 1 13.94 ? O 55Y 701 A 1 HETATM 17 C C2 55Y . . . B 2 -4.99 -12.482 -15.937 1 11.94 ? C2 55Y 701 A 1 HETATM 18 S S 55Y . . . B 2 -6.745 -8.998 -15.472 1 17.04 ? S 55Y 701 A 1 HETATM 19 N N 55Y . . . B 2 -7.703 -10.204 -15.856 1 17.18 ? N 55Y 701 A 1 HETATM 20 C C3 55Y . . . B 2 -5.611 -13.623 -16.237 1 13.24 ? C3 55Y 701 A 1 HETATM 21 C C9 55Y . . . B 2 -7.646 -14.986 -16.699 1 15.17 ? C9 55Y 701 A 1 HETATM 22 C C12 55Y . . . B 2 -7.082 -16.221 -16.773 1 15.19 ? C12 55Y 701 A 1 HETATM 23 N N2 55Y . . . B 2 -7.942 -17.158 -17.116 1 17.2 ? N2 55Y 701 A 1 HETATM 24 C C11 55Y . . . B 2 -10.257 -17.283 -17.636 1 25.42 ? C11 55Y 701 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #