data_5CY7 # _model_server_result.job_id 2oZ91DSK_s0rSw-8-KGGcA _model_server_result.datetime_utc '2024-10-20 07:37:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cy7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5CY7 # _exptl.entry_id 5CY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CY7 _cell.length_a 58.823 _cell.length_b 58.823 _cell.length_c 264.034 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 14 A LEU 14 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OE2 GLU 37 A GLU 37 1_555 E CD CD . A CD 204 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc3 A NE2 HIS 43 A HIS 43 1_555 D CD CD . A CD 203 8_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc4 A SG CYS 99 A CYS 99 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 A OE1 GLU 128 A GLU 128 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc7 A NE2 HIS 141 A HIS 141 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc8 A NE2 HIS 145 A HIS 145 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 B CD CD . A CD 201 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 D CD CD . A CD 203 1_555 H O HOH . A HOH 323 8_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc11 D CD CD . A CD 203 1_555 H O HOH . A HOH 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc12 E CD CD . A CD 204 1_555 H O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc13 G NA NA . A NA 206 1_555 H O HOH . A HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc14 G NA NA . A NA 206 1_555 H O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc15 G NA NA . A NA 206 1_555 H O HOH . A HOH 385 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc16 G NA NA . A NA 206 1_555 H O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc17 G NA NA . A NA 206 1_555 H O HOH . A HOH 407 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CY7 _atom_sites.fract_transf_matrix[1][1] 0.017 _atom_sites.fract_transf_matrix[1][2] 0.009815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 1 CD CD . C 3 ACT A 1 202 1 ACT ACT . D 2 CD A 1 203 1 CD CD . E 2 CD A 1 204 1 CD CD . F 4 56U A 1 205 1 56U 275 . G 5 NA A 1 206 1 NA NA . H 6 HOH A 1 301 58 HOH HOH . H 6 HOH A 2 302 7 HOH HOH . H 6 HOH A 3 303 41 HOH HOH . H 6 HOH A 4 304 10 HOH HOH . H 6 HOH A 5 305 33 HOH HOH . H 6 HOH A 6 306 1 HOH HOH . H 6 HOH A 7 307 43 HOH HOH . H 6 HOH A 8 308 27 HOH HOH . H 6 HOH A 9 309 3 HOH HOH . H 6 HOH A 10 310 13 HOH HOH . H 6 HOH A 11 311 39 HOH HOH . H 6 HOH A 12 312 38 HOH HOH . H 6 HOH A 13 313 96 HOH HOH . H 6 HOH A 14 314 1 HOH HOH . H 6 HOH A 15 315 44 HOH HOH . H 6 HOH A 16 316 29 HOH HOH . H 6 HOH A 17 317 7 HOH HOH . H 6 HOH A 18 318 72 HOH HOH . H 6 HOH A 19 319 76 HOH HOH . H 6 HOH A 20 320 14 HOH HOH . H 6 HOH A 21 321 53 HOH HOH . H 6 HOH A 22 322 68 HOH HOH . H 6 HOH A 23 323 82 HOH HOH . H 6 HOH A 24 324 55 HOH HOH . H 6 HOH A 25 325 46 HOH HOH . H 6 HOH A 26 326 87 HOH HOH . H 6 HOH A 27 327 60 HOH HOH . H 6 HOH A 28 328 78 HOH HOH . H 6 HOH A 29 329 93 HOH HOH . H 6 HOH A 30 330 67 HOH HOH . H 6 HOH A 31 331 84 HOH HOH . H 6 HOH A 32 332 2 HOH HOH . H 6 HOH A 33 333 25 HOH HOH . H 6 HOH A 34 334 22 HOH HOH . H 6 HOH A 35 335 18 HOH HOH . H 6 HOH A 36 336 45 HOH HOH . H 6 HOH A 37 337 42 HOH HOH . H 6 HOH A 38 338 13 HOH HOH . H 6 HOH A 39 339 50 HOH HOH . H 6 HOH A 40 340 21 HOH HOH . H 6 HOH A 41 341 23 HOH HOH . H 6 HOH A 42 342 17 HOH HOH . H 6 HOH A 43 343 75 HOH HOH . H 6 HOH A 44 344 15 HOH HOH . H 6 HOH A 45 345 12 HOH HOH . H 6 HOH A 46 346 32 HOH HOH . H 6 HOH A 47 347 95 HOH HOH . H 6 HOH A 48 348 28 HOH HOH . H 6 HOH A 49 349 10 HOH HOH . H 6 HOH A 50 350 4 HOH HOH . H 6 HOH A 51 351 3 HOH HOH . H 6 HOH A 52 352 12 HOH HOH . H 6 HOH A 53 353 30 HOH HOH . H 6 HOH A 54 354 6 HOH HOH . H 6 HOH A 55 355 88 HOH HOH . H 6 HOH A 56 356 64 HOH HOH . H 6 HOH A 57 357 92 HOH HOH . H 6 HOH A 58 358 16 HOH HOH . H 6 HOH A 59 359 71 HOH HOH . H 6 HOH A 60 360 35 HOH HOH . H 6 HOH A 61 361 54 HOH HOH . H 6 HOH A 62 362 49 HOH HOH . H 6 HOH A 63 363 52 HOH HOH . H 6 HOH A 64 364 59 HOH HOH . H 6 HOH A 65 365 34 HOH HOH . H 6 HOH A 66 366 86 HOH HOH . H 6 HOH A 67 367 19 HOH HOH . H 6 HOH A 68 368 40 HOH HOH . H 6 HOH A 69 369 26 HOH HOH . H 6 HOH A 70 370 37 HOH HOH . H 6 HOH A 71 371 85 HOH HOH . H 6 HOH A 72 372 8 HOH HOH . H 6 HOH A 73 373 11 HOH HOH . H 6 HOH A 74 374 9 HOH HOH . H 6 HOH A 75 375 83 HOH HOH . H 6 HOH A 76 376 5 HOH HOH . H 6 HOH A 77 377 94 HOH HOH . H 6 HOH A 78 378 65 HOH HOH . H 6 HOH A 79 379 5 HOH HOH . H 6 HOH A 80 380 61 HOH HOH . H 6 HOH A 81 381 81 HOH HOH . H 6 HOH A 82 382 69 HOH HOH . H 6 HOH A 83 383 74 HOH HOH . H 6 HOH A 84 384 20 HOH HOH . H 6 HOH A 85 385 9 HOH HOH . H 6 HOH A 86 386 31 HOH HOH . H 6 HOH A 87 387 36 HOH HOH . H 6 HOH A 88 388 47 HOH HOH . H 6 HOH A 89 389 6 HOH HOH . H 6 HOH A 90 390 91 HOH HOH . H 6 HOH A 91 391 70 HOH HOH . H 6 HOH A 92 392 80 HOH HOH . H 6 HOH A 93 393 24 HOH HOH . H 6 HOH A 94 394 11 HOH HOH . H 6 HOH A 95 395 77 HOH HOH . H 6 HOH A 96 396 2 HOH HOH . H 6 HOH A 97 397 4 HOH HOH . H 6 HOH A 98 398 63 HOH HOH . H 6 HOH A 99 399 56 HOH HOH . H 6 HOH A 100 400 62 HOH HOH . H 6 HOH A 101 401 90 HOH HOH . H 6 HOH A 102 402 97 HOH HOH . H 6 HOH A 103 403 48 HOH HOH . H 6 HOH A 104 404 51 HOH HOH . H 6 HOH A 105 405 89 HOH HOH . H 6 HOH A 106 406 100 HOH HOH . H 6 HOH A 107 407 79 HOH HOH . H 6 HOH A 108 408 99 HOH HOH . H 6 HOH A 109 409 8 HOH HOH . H 6 HOH A 110 410 66 HOH HOH . H 6 HOH A 111 411 98 HOH HOH . H 6 HOH A 112 412 73 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 18.585 _atom_site.Cartn_y -33.872 _atom_site.Cartn_z 1.376 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #