data_5CYH
#
_model_server_result.job_id            CmaaMCgS01iPEYEtYqFUvw 
_model_server_result.datetime_utc      '2024-11-08 13:39:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cyh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5CYH 
#
_exptl.entry_id    5CYH 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CYH 
_cell.length_a            40.8 
_cell.length_b            52.4 
_cell.length_c            90.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CYH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            B 
_struct_conn.ptnr1_label_atom_id            C 
_struct_conn.ptnr1_label_comp_id            GLY 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             GLY 
_struct_conn.ptnr1_auth_seq_id              201 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            N 
_struct_conn.ptnr2_label_comp_id            PRO 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             PRO 
_struct_conn.ptnr2_auth_seq_id              202 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.321 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 120 n n 
N H GLY sing 121 n n 
N H2 GLY sing 122 n n 
CA C GLY sing 123 n n 
CA HA2 GLY sing 124 n n 
CA HA3 GLY sing 125 n n 
C O GLY doub 126 n n 
C OXT GLY sing 127 n n 
OXT HXT GLY sing 128 n n 
#
_atom_sites.entry_id                     5CYH 
_atom_sites.fract_transf_matrix[1][1]    0.02451 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019084 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011099 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLY A 1 201 201 GLY GLY . 
C 3 PRO A 1 202 202 PRO PRO . 
D 4 HOH A 1 203 166 HOH HOH . 
D 4 HOH A 2 204 167 HOH HOH . 
D 4 HOH A 3 205 168 HOH HOH . 
D 4 HOH A 4 206 169 HOH HOH . 
D 4 HOH A 5 207 170 HOH HOH . 
D 4 HOH A 6 208 171 HOH HOH . 
D 4 HOH A 7 209 172 HOH HOH . 
D 4 HOH A 8 210 173 HOH HOH . 
D 4 HOH A 9 211 174 HOH HOH . 
D 4 HOH A 10 212 175 HOH HOH . 
D 4 HOH A 11 213 176 HOH HOH . 
D 4 HOH A 12 214 177 HOH HOH . 
D 4 HOH A 13 215 178 HOH HOH . 
D 4 HOH A 14 216 179 HOH HOH . 
D 4 HOH A 15 217 180 HOH HOH . 
D 4 HOH A 16 218 181 HOH HOH . 
D 4 HOH A 17 219 182 HOH HOH . 
D 4 HOH A 18 220 183 HOH HOH . 
D 4 HOH A 19 221 184 HOH HOH . 
D 4 HOH A 20 222 185 HOH HOH . 
D 4 HOH A 21 223 186 HOH HOH . 
D 4 HOH A 22 224 187 HOH HOH . 
D 4 HOH A 23 225 188 HOH HOH . 
D 4 HOH A 24 226 189 HOH HOH . 
D 4 HOH A 25 227 190 HOH HOH . 
D 4 HOH A 26 228 191 HOH HOH . 
D 4 HOH A 27 229 192 HOH HOH . 
D 4 HOH A 28 230 193 HOH HOH . 
D 4 HOH A 29 231 194 HOH HOH . 
D 4 HOH A 30 232 195 HOH HOH . 
D 4 HOH A 31 233 196 HOH HOH . 
D 4 HOH A 32 234 197 HOH HOH . 
D 4 HOH A 33 235 198 HOH HOH . 
D 4 HOH A 34 236 199 HOH HOH . 
D 4 HOH A 35 237 200 HOH HOH . 
D 4 HOH A 36 238 201 HOH HOH . 
D 4 HOH A 37 239 202 HOH HOH . 
D 4 HOH A 38 240 203 HOH HOH . 
D 4 HOH A 39 241 204 HOH HOH . 
D 4 HOH A 40 242 205 HOH HOH . 
D 4 HOH A 41 243 206 HOH HOH . 
D 4 HOH A 42 244 207 HOH HOH . 
D 4 HOH A 43 245 208 HOH HOH . 
D 4 HOH A 44 246 209 HOH HOH . 
D 4 HOH A 45 247 210 HOH HOH . 
D 4 HOH A 46 248 211 HOH HOH . 
D 4 HOH A 47 249 18 HOH HOH . 
D 4 HOH A 48 250 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . B 2 18.838 9.087 4.49 1 37.14 ? N GLY 201 A 1 
HETATM 2 C CA GLY . . . B 2 19.574 10.209 3.979 1 32.38 ? CA GLY 201 A 1 
HETATM 3 C C GLY . . . B 2 18.98 11.409 4.675 1 32.56 ? C GLY 201 A 1 
HETATM 4 O O GLY . . . B 2 17.858 11.304 5.202 1 30.95 ? O GLY 201 A 1 
HETATM 5 H H1 GLY . . . B 2 18.915 9.181 5.525 1 0 ? H1 GLY 201 A 1 
HETATM 6 H H2 GLY . . . B 2 17.837 9.181 4.216 1 0 ? H2 GLY 201 A 1 
HETATM 7 H H3 GLY . . . B 2 19.239 8.193 4.179 1 0 ? H3 GLY 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           7 
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