data_5CYH # _model_server_result.job_id vk6EDBGpeRE4_UM2JAB2fw _model_server_result.datetime_utc '2024-11-08 13:51:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5CYH # _exptl.entry_id 5CYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CYH _cell.length_a 40.8 _cell.length_b 52.4 _cell.length_c 90.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 201 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id PRO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PRO _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 260 n n N CD PRO sing 261 n n N H PRO sing 262 n n CA C PRO sing 263 n n CA CB PRO sing 264 n n CA HA PRO sing 265 n n C O PRO doub 266 n n C OXT PRO sing 267 n n CB CG PRO sing 268 n n CB HB2 PRO sing 269 n n CB HB3 PRO sing 270 n n CG CD PRO sing 271 n n CG HG2 PRO sing 272 n n CG HG3 PRO sing 273 n n CD HD2 PRO sing 274 n n CD HD3 PRO sing 275 n n OXT HXT PRO sing 276 n n # _atom_sites.entry_id 5CYH _atom_sites.fract_transf_matrix[1][1] 0.02451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 201 201 GLY GLY . C 3 PRO A 1 202 202 PRO PRO . D 4 HOH A 1 203 166 HOH HOH . D 4 HOH A 2 204 167 HOH HOH . D 4 HOH A 3 205 168 HOH HOH . D 4 HOH A 4 206 169 HOH HOH . D 4 HOH A 5 207 170 HOH HOH . D 4 HOH A 6 208 171 HOH HOH . D 4 HOH A 7 209 172 HOH HOH . D 4 HOH A 8 210 173 HOH HOH . D 4 HOH A 9 211 174 HOH HOH . D 4 HOH A 10 212 175 HOH HOH . D 4 HOH A 11 213 176 HOH HOH . D 4 HOH A 12 214 177 HOH HOH . D 4 HOH A 13 215 178 HOH HOH . D 4 HOH A 14 216 179 HOH HOH . D 4 HOH A 15 217 180 HOH HOH . D 4 HOH A 16 218 181 HOH HOH . D 4 HOH A 17 219 182 HOH HOH . D 4 HOH A 18 220 183 HOH HOH . D 4 HOH A 19 221 184 HOH HOH . D 4 HOH A 20 222 185 HOH HOH . D 4 HOH A 21 223 186 HOH HOH . D 4 HOH A 22 224 187 HOH HOH . D 4 HOH A 23 225 188 HOH HOH . D 4 HOH A 24 226 189 HOH HOH . D 4 HOH A 25 227 190 HOH HOH . D 4 HOH A 26 228 191 HOH HOH . D 4 HOH A 27 229 192 HOH HOH . D 4 HOH A 28 230 193 HOH HOH . D 4 HOH A 29 231 194 HOH HOH . D 4 HOH A 30 232 195 HOH HOH . D 4 HOH A 31 233 196 HOH HOH . D 4 HOH A 32 234 197 HOH HOH . D 4 HOH A 33 235 198 HOH HOH . D 4 HOH A 34 236 199 HOH HOH . D 4 HOH A 35 237 200 HOH HOH . D 4 HOH A 36 238 201 HOH HOH . D 4 HOH A 37 239 202 HOH HOH . D 4 HOH A 38 240 203 HOH HOH . D 4 HOH A 39 241 204 HOH HOH . D 4 HOH A 40 242 205 HOH HOH . D 4 HOH A 41 243 206 HOH HOH . D 4 HOH A 42 244 207 HOH HOH . D 4 HOH A 43 245 208 HOH HOH . D 4 HOH A 44 246 209 HOH HOH . D 4 HOH A 45 247 210 HOH HOH . D 4 HOH A 46 248 211 HOH HOH . D 4 HOH A 47 249 18 HOH HOH . D 4 HOH A 48 250 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . C 3 19.616 12.566 4.627 1 33.49 ? N PRO 202 A 1 HETATM 2 C CA PRO . . . C 3 20.829 12.851 3.851 1 34.03 ? CA PRO 202 A 1 HETATM 3 C C PRO . . . C 3 22.163 12.313 4.382 1 35.4 ? C PRO 202 A 1 HETATM 4 O O PRO . . . C 3 22.144 11.534 5.334 1 35.53 ? O PRO 202 A 1 HETATM 5 C CB PRO . . . C 3 20.807 14.352 3.73 1 33.61 ? CB PRO 202 A 1 HETATM 6 C CG PRO . . . C 3 19.49 14.8 4.305 1 32.99 ? CG PRO 202 A 1 HETATM 7 C CD PRO . . . C 3 19.156 13.752 5.312 1 33.23 ? CD PRO 202 A 1 HETATM 8 O OXT PRO . . . C 3 23.211 12.61 3.802 1 35.28 ? OXT PRO 202 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #