data_5CYM # _model_server_result.job_id sGnIDyW_mEWmw-wsikMA7w _model_server_result.datetime_utc '2024-11-04 22:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 5CYM # _exptl.entry_id 5CYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.67 _cell.angle_gamma 90 _cell.entry_id 5CYM _cell.length_a 162.842 _cell.length_b 73.483 _cell.length_c 109.582 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 W N N ? 5 X N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 5CYM _atom_sites.fract_transf_matrix[1][1] 0.006141 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001157 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 T27 A 1 601 1 T27 278 . D 4 SO4 A 1 602 2 SO4 SO4 . E 4 SO4 A 1 603 4 SO4 SO4 . F 4 SO4 A 1 604 5 SO4 SO4 . G 5 EDO A 1 605 1 EDO EDO . H 5 EDO A 1 606 4 EDO EDO . I 6 IOD A 1 607 1 IOD IOD . J 6 IOD A 1 608 2 IOD IOD . K 6 IOD A 1 609 6 IOD IOD . L 6 IOD A 1 610 8 IOD IOD . M 6 IOD A 1 611 9 IOD IOD . N 6 IOD A 1 612 11 IOD IOD . O 6 IOD A 1 613 13 IOD IOD . P 6 IOD A 1 614 14 IOD IOD . Q 6 IOD A 1 615 15 IOD IOD . R 6 IOD A 1 616 16 IOD IOD . S 7 PYZ A 1 617 2 PYZ 4IP . T 7 PYZ A 1 618 4 PYZ 4IP . U 8 DMS A 1 619 1 DMS DMS . V 4 SO4 B 1 501 6 SO4 SO4 . W 5 EDO B 1 502 2 EDO EDO . X 5 EDO B 1 503 3 EDO EDO . Y 6 IOD B 1 504 3 IOD IOD . Z 6 IOD B 1 505 5 IOD IOD . AA 6 IOD B 1 506 10 IOD IOD . BA 6 IOD B 1 507 12 IOD IOD . CA 7 PYZ B 1 508 1 PYZ 4IP . DA 7 PYZ B 1 509 3 PYZ 4IP . EA 7 PYZ B 1 510 5 PYZ 4IP . FA 7 PYZ B 1 511 6 PYZ 4IP . GA 8 DMS B 1 512 3 DMS DMS . HA 8 DMS B 1 513 4 DMS DMS . IA 8 DMS B 1 514 5 DMS DMS . JA 8 DMS B 1 515 6 DMS DMS . KA 9 HOH A 1 701 146 HOH HOH . KA 9 HOH A 2 702 201 HOH HOH . KA 9 HOH A 3 703 224 HOH HOH . KA 9 HOH A 4 704 98 HOH HOH . KA 9 HOH A 5 705 178 HOH HOH . KA 9 HOH A 6 706 200 HOH HOH . KA 9 HOH A 7 707 149 HOH HOH . KA 9 HOH A 8 708 79 HOH HOH . KA 9 HOH A 9 709 223 HOH HOH . KA 9 HOH A 10 710 209 HOH HOH . KA 9 HOH A 11 711 231 HOH HOH . KA 9 HOH A 12 712 104 HOH HOH . KA 9 HOH A 13 713 60 HOH HOH . KA 9 HOH A 14 714 206 HOH HOH . KA 9 HOH A 15 715 229 HOH HOH . KA 9 HOH A 16 716 86 HOH HOH . KA 9 HOH A 17 717 187 HOH HOH . KA 9 HOH A 18 718 118 HOH HOH . KA 9 HOH A 19 719 36 HOH HOH . KA 9 HOH A 20 720 35 HOH HOH . KA 9 HOH A 21 721 75 HOH HOH . KA 9 HOH A 22 722 108 HOH HOH . KA 9 HOH A 23 723 147 HOH HOH . KA 9 HOH A 24 724 164 HOH HOH . KA 9 HOH A 25 725 130 HOH HOH . KA 9 HOH A 26 726 7 HOH HOH . KA 9 HOH A 27 727 132 HOH HOH . KA 9 HOH A 28 728 16 HOH HOH . KA 9 HOH A 29 729 217 HOH HOH . KA 9 HOH A 30 730 11 HOH HOH . KA 9 HOH A 31 731 34 HOH HOH . KA 9 HOH A 32 732 127 HOH HOH . KA 9 HOH A 33 733 171 HOH HOH . KA 9 HOH A 34 734 25 HOH HOH . KA 9 HOH A 35 735 43 HOH HOH . KA 9 HOH A 36 736 9 HOH HOH . KA 9 HOH A 37 737 129 HOH HOH . KA 9 HOH A 38 738 5 HOH HOH . KA 9 HOH A 39 739 172 HOH HOH . KA 9 HOH A 40 740 30 HOH HOH . KA 9 HOH A 41 741 95 HOH HOH . KA 9 HOH A 42 742 29 HOH HOH . KA 9 HOH A 43 743 45 HOH HOH . KA 9 HOH A 44 744 50 HOH HOH . KA 9 HOH A 45 745 116 HOH HOH . KA 9 HOH A 46 746 68 HOH HOH . KA 9 HOH A 47 747 77 HOH HOH . KA 9 HOH A 48 748 188 HOH HOH . KA 9 HOH A 49 749 109 HOH HOH . KA 9 HOH A 50 750 157 HOH HOH . KA 9 HOH A 51 751 44 HOH HOH . KA 9 HOH A 52 752 151 HOH HOH . KA 9 HOH A 53 753 41 HOH HOH . KA 9 HOH A 54 754 169 HOH HOH . KA 9 HOH A 55 755 89 HOH HOH . KA 9 HOH A 56 756 123 HOH HOH . KA 9 HOH A 57 757 28 HOH HOH . KA 9 HOH A 58 758 71 HOH HOH . KA 9 HOH A 59 759 66 HOH HOH . KA 9 HOH A 60 760 81 HOH HOH . KA 9 HOH A 61 761 222 HOH HOH . KA 9 HOH A 62 762 106 HOH HOH . KA 9 HOH A 63 763 159 HOH HOH . KA 9 HOH A 64 764 8 HOH HOH . KA 9 HOH A 65 765 124 HOH HOH . KA 9 HOH A 66 766 46 HOH HOH . KA 9 HOH A 67 767 92 HOH HOH . KA 9 HOH A 68 768 141 HOH HOH . KA 9 HOH A 69 769 153 HOH HOH . KA 9 HOH A 70 770 76 HOH HOH . KA 9 HOH A 71 771 15 HOH HOH . KA 9 HOH A 72 772 93 HOH HOH . KA 9 HOH A 73 773 117 HOH HOH . KA 9 HOH A 74 774 33 HOH HOH . KA 9 HOH A 75 775 49 HOH HOH . KA 9 HOH A 76 776 56 HOH HOH . KA 9 HOH A 77 777 47 HOH HOH . KA 9 HOH A 78 778 87 HOH HOH . KA 9 HOH A 79 779 6 HOH HOH . KA 9 HOH A 80 780 52 HOH HOH . KA 9 HOH A 81 781 218 HOH HOH . KA 9 HOH A 82 782 115 HOH HOH . KA 9 HOH A 83 783 42 HOH HOH . KA 9 HOH A 84 784 19 HOH HOH . KA 9 HOH A 85 785 96 HOH HOH . KA 9 HOH A 86 786 97 HOH HOH . KA 9 HOH A 87 787 111 HOH HOH . KA 9 HOH A 88 788 84 HOH HOH . KA 9 HOH A 89 789 166 HOH HOH . KA 9 HOH A 90 790 152 HOH HOH . KA 9 HOH A 91 791 103 HOH HOH . KA 9 HOH A 92 792 142 HOH HOH . KA 9 HOH A 93 793 14 HOH HOH . KA 9 HOH A 94 794 48 HOH HOH . KA 9 HOH A 95 795 10 HOH HOH . KA 9 HOH A 96 796 150 HOH HOH . KA 9 HOH A 97 797 88 HOH HOH . KA 9 HOH A 98 798 236 HOH HOH . KA 9 HOH A 99 799 216 HOH HOH . KA 9 HOH A 100 800 155 HOH HOH . KA 9 HOH A 101 801 139 HOH HOH . KA 9 HOH A 102 802 221 HOH HOH . KA 9 HOH A 103 803 189 HOH HOH . KA 9 HOH A 104 804 174 HOH HOH . KA 9 HOH A 105 805 211 HOH HOH . KA 9 HOH A 106 806 2 HOH HOH . KA 9 HOH A 107 807 208 HOH HOH . KA 9 HOH A 108 808 110 HOH HOH . KA 9 HOH A 109 809 134 HOH HOH . KA 9 HOH A 110 810 143 HOH HOH . KA 9 HOH A 111 811 185 HOH HOH . KA 9 HOH A 112 812 94 HOH HOH . KA 9 HOH A 113 813 198 HOH HOH . KA 9 HOH A 114 814 190 HOH HOH . KA 9 HOH A 115 815 154 HOH HOH . KA 9 HOH A 116 816 203 HOH HOH . KA 9 HOH A 117 817 128 HOH HOH . KA 9 HOH A 118 818 176 HOH HOH . KA 9 HOH A 119 819 204 HOH HOH . KA 9 HOH A 120 820 100 HOH HOH . KA 9 HOH A 121 821 194 HOH HOH . KA 9 HOH A 122 822 186 HOH HOH . KA 9 HOH A 123 823 161 HOH HOH . KA 9 HOH A 124 824 167 HOH HOH . KA 9 HOH A 125 825 226 HOH HOH . KA 9 HOH A 126 826 31 HOH HOH . KA 9 HOH A 127 827 191 HOH HOH . KA 9 HOH A 128 828 202 HOH HOH . KA 9 HOH A 129 829 170 HOH HOH . KA 9 HOH A 130 830 199 HOH HOH . KA 9 HOH A 131 831 230 HOH HOH . KA 9 HOH A 132 832 207 HOH HOH . KA 9 HOH A 133 833 179 HOH HOH . KA 9 HOH A 134 834 102 HOH HOH . KA 9 HOH A 135 835 180 HOH HOH . KA 9 HOH A 136 836 140 HOH HOH . KA 9 HOH A 137 837 173 HOH HOH . KA 9 HOH A 138 838 160 HOH HOH . KA 9 HOH A 139 839 192 HOH HOH . KA 9 HOH A 140 840 184 HOH HOH . KA 9 HOH A 141 841 107 HOH HOH . KA 9 HOH A 142 842 99 HOH HOH . KA 9 HOH A 143 843 182 HOH HOH . KA 9 HOH A 144 844 195 HOH HOH . KA 9 HOH A 145 845 213 HOH HOH . KA 9 HOH A 146 846 197 HOH HOH . KA 9 HOH A 147 847 114 HOH HOH . KA 9 HOH A 148 848 113 HOH HOH . KA 9 HOH A 149 849 158 HOH HOH . KA 9 HOH A 150 850 80 HOH HOH . LA 9 HOH B 1 601 228 HOH HOH . LA 9 HOH B 2 602 219 HOH HOH . LA 9 HOH B 3 603 133 HOH HOH . LA 9 HOH B 4 604 53 HOH HOH . LA 9 HOH B 5 605 90 HOH HOH . LA 9 HOH B 6 606 54 HOH HOH . LA 9 HOH B 7 607 105 HOH HOH . LA 9 HOH B 8 608 227 HOH HOH . LA 9 HOH B 9 609 40 HOH HOH . LA 9 HOH B 10 610 37 HOH HOH . LA 9 HOH B 11 611 85 HOH HOH . LA 9 HOH B 12 612 1 HOH HOH . LA 9 HOH B 13 613 67 HOH HOH . LA 9 HOH B 14 614 162 HOH HOH . LA 9 HOH B 15 615 32 HOH HOH . LA 9 HOH B 16 616 177 HOH HOH . LA 9 HOH B 17 617 20 HOH HOH . LA 9 HOH B 18 618 3 HOH HOH . LA 9 HOH B 19 619 72 HOH HOH . LA 9 HOH B 20 620 64 HOH HOH . LA 9 HOH B 21 621 39 HOH HOH . LA 9 HOH B 22 622 126 HOH HOH . LA 9 HOH B 23 623 23 HOH HOH . LA 9 HOH B 24 624 112 HOH HOH . LA 9 HOH B 25 625 55 HOH HOH . LA 9 HOH B 26 626 136 HOH HOH . LA 9 HOH B 27 627 62 HOH HOH . LA 9 HOH B 28 628 73 HOH HOH . LA 9 HOH B 29 629 4 HOH HOH . LA 9 HOH B 30 630 225 HOH HOH . LA 9 HOH B 31 631 135 HOH HOH . LA 9 HOH B 32 632 122 HOH HOH . LA 9 HOH B 33 633 119 HOH HOH . LA 9 HOH B 34 634 17 HOH HOH . LA 9 HOH B 35 635 18 HOH HOH . LA 9 HOH B 36 636 69 HOH HOH . LA 9 HOH B 37 637 214 HOH HOH . LA 9 HOH B 38 638 13 HOH HOH . LA 9 HOH B 39 639 210 HOH HOH . LA 9 HOH B 40 640 83 HOH HOH . LA 9 HOH B 41 641 27 HOH HOH . LA 9 HOH B 42 642 38 HOH HOH . LA 9 HOH B 43 643 12 HOH HOH . LA 9 HOH B 44 644 78 HOH HOH . LA 9 HOH B 45 645 138 HOH HOH . LA 9 HOH B 46 646 193 HOH HOH . LA 9 HOH B 47 647 22 HOH HOH . LA 9 HOH B 48 648 74 HOH HOH . LA 9 HOH B 49 649 137 HOH HOH . LA 9 HOH B 50 650 205 HOH HOH . LA 9 HOH B 51 651 163 HOH HOH . LA 9 HOH B 52 652 101 HOH HOH . LA 9 HOH B 53 653 148 HOH HOH . LA 9 HOH B 54 654 234 HOH HOH . LA 9 HOH B 55 655 145 HOH HOH . LA 9 HOH B 56 656 120 HOH HOH . LA 9 HOH B 57 657 144 HOH HOH . LA 9 HOH B 58 658 70 HOH HOH . LA 9 HOH B 59 659 24 HOH HOH . LA 9 HOH B 60 660 26 HOH HOH . LA 9 HOH B 61 661 196 HOH HOH . LA 9 HOH B 62 662 212 HOH HOH . LA 9 HOH B 63 663 125 HOH HOH . LA 9 HOH B 64 664 82 HOH HOH . LA 9 HOH B 65 665 233 HOH HOH . LA 9 HOH B 66 666 168 HOH HOH . LA 9 HOH B 67 667 91 HOH HOH . LA 9 HOH B 68 668 131 HOH HOH . LA 9 HOH B 69 669 21 HOH HOH . LA 9 HOH B 70 670 165 HOH HOH . LA 9 HOH B 71 671 65 HOH HOH . LA 9 HOH B 72 672 121 HOH HOH . LA 9 HOH B 73 673 51 HOH HOH . LA 9 HOH B 74 674 220 HOH HOH . LA 9 HOH B 75 675 232 HOH HOH . LA 9 HOH B 76 676 235 HOH HOH . LA 9 HOH B 77 677 57 HOH HOH . LA 9 HOH B 78 678 215 HOH HOH . LA 9 HOH B 79 679 175 HOH HOH . LA 9 HOH B 80 680 58 HOH HOH . LA 9 HOH B 81 681 156 HOH HOH . LA 9 HOH B 82 682 63 HOH HOH . LA 9 HOH B 83 683 59 HOH HOH . LA 9 HOH B 84 684 61 HOH HOH . LA 9 HOH B 85 685 183 HOH HOH . LA 9 HOH B 86 686 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 24.873 -3.027 8.002 1 60.37 ? C1 EDO 605 A 1 HETATM 2 O O1 EDO . . . G 5 24.835 -4.326 7.401 1 57.26 ? O1 EDO 605 A 1 HETATM 3 C C2 EDO . . . G 5 24.61 -1.958 6.947 1 62.32 ? C2 EDO 605 A 1 HETATM 4 O O2 EDO . . . G 5 25.803 -1.702 6.199 1 80.25 ? O2 EDO 605 A 1 HETATM 5 H H11 EDO . . . G 5 24.118 -2.962 8.787 1 72.44 ? H11 EDO 605 A 1 HETATM 6 H H12 EDO . . . G 5 25.852 -2.861 8.457 1 72.44 ? H12 EDO 605 A 1 HETATM 7 H HO1 EDO . . . G 5 25.002 -4.999 8.075 1 68.71 ? HO1 EDO 605 A 1 HETATM 8 H H21 EDO . . . G 5 24.276 -1.038 7.432 1 74.79 ? H21 EDO 605 A 1 HETATM 9 H H22 EDO . . . G 5 23.819 -2.293 6.274 1 74.79 ? H22 EDO 605 A 1 HETATM 10 H HO2 EDO . . . G 5 25.626 -1.024 5.533 1 96.29 ? HO2 EDO 605 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #