data_5CYW # _model_server_result.job_id X5L1Bjuu9HFn5JHQFrwIEw _model_server_result.datetime_utc '2025-01-22 09:05:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5CYW # _exptl.entry_id 5CYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CYW _cell.length_a 100.653 _cell.length_b 100.653 _cell.length_c 100.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_544 -z,x-1/2,-y-1/2 0 0 -1 1 0 0 0 -1 0 0 -50.3265 -50.3265 3 'crystal symmetry operation' 11_545 y+1/2,-z-1/2,-x 0 1 0 0 0 -1 -1 0 0 50.3265 -50.3265 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5CYW _atom_sites.fract_transf_matrix[1][1] 0.009935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL B 1 201 1 GOL GOL . C 2 GOL B 1 202 2 GOL GOL . D 3 HOH B 1 301 78 HOH HOH . D 3 HOH B 2 302 91 HOH HOH . D 3 HOH B 3 303 77 HOH HOH . D 3 HOH B 4 304 105 HOH HOH . D 3 HOH B 5 305 70 HOH HOH . D 3 HOH B 6 306 73 HOH HOH . D 3 HOH B 7 307 95 HOH HOH . D 3 HOH B 8 308 15 HOH HOH . D 3 HOH B 9 309 56 HOH HOH . D 3 HOH B 10 310 43 HOH HOH . D 3 HOH B 11 311 65 HOH HOH . D 3 HOH B 12 312 69 HOH HOH . D 3 HOH B 13 313 32 HOH HOH . D 3 HOH B 14 314 5 HOH HOH . D 3 HOH B 15 315 60 HOH HOH . D 3 HOH B 16 316 129 HOH HOH . D 3 HOH B 17 317 158 HOH HOH . D 3 HOH B 18 318 25 HOH HOH . D 3 HOH B 19 319 141 HOH HOH . D 3 HOH B 20 320 26 HOH HOH . D 3 HOH B 21 321 145 HOH HOH . D 3 HOH B 22 322 22 HOH HOH . D 3 HOH B 23 323 9 HOH HOH . D 3 HOH B 24 324 14 HOH HOH . D 3 HOH B 25 325 204 HOH HOH . D 3 HOH B 26 326 29 HOH HOH . D 3 HOH B 27 327 189 HOH HOH . D 3 HOH B 28 328 83 HOH HOH . D 3 HOH B 29 329 54 HOH HOH . D 3 HOH B 30 330 50 HOH HOH . D 3 HOH B 31 331 40 HOH HOH . D 3 HOH B 32 332 62 HOH HOH . D 3 HOH B 33 333 31 HOH HOH . D 3 HOH B 34 334 106 HOH HOH . D 3 HOH B 35 335 99 HOH HOH . D 3 HOH B 36 336 28 HOH HOH . D 3 HOH B 37 337 21 HOH HOH . D 3 HOH B 38 338 41 HOH HOH . D 3 HOH B 39 339 186 HOH HOH . D 3 HOH B 40 340 8 HOH HOH . D 3 HOH B 41 341 89 HOH HOH . D 3 HOH B 42 342 27 HOH HOH . D 3 HOH B 43 343 184 HOH HOH . D 3 HOH B 44 344 38 HOH HOH . D 3 HOH B 45 345 157 HOH HOH . D 3 HOH B 46 346 132 HOH HOH . D 3 HOH B 47 347 178 HOH HOH . D 3 HOH B 48 348 107 HOH HOH . D 3 HOH B 49 349 88 HOH HOH . D 3 HOH B 50 350 59 HOH HOH . D 3 HOH B 51 351 13 HOH HOH . D 3 HOH B 52 352 6 HOH HOH . D 3 HOH B 53 353 11 HOH HOH . D 3 HOH B 54 354 46 HOH HOH . D 3 HOH B 55 355 17 HOH HOH . D 3 HOH B 56 356 87 HOH HOH . D 3 HOH B 57 357 34 HOH HOH . D 3 HOH B 58 358 2 HOH HOH . D 3 HOH B 59 359 168 HOH HOH . D 3 HOH B 60 360 117 HOH HOH . D 3 HOH B 61 361 51 HOH HOH . D 3 HOH B 62 362 35 HOH HOH . D 3 HOH B 63 363 98 HOH HOH . D 3 HOH B 64 364 112 HOH HOH . D 3 HOH B 65 365 154 HOH HOH . D 3 HOH B 66 366 142 HOH HOH . D 3 HOH B 67 367 47 HOH HOH . D 3 HOH B 68 368 3 HOH HOH . D 3 HOH B 69 369 80 HOH HOH . D 3 HOH B 70 370 126 HOH HOH . D 3 HOH B 71 371 109 HOH HOH . D 3 HOH B 72 372 19 HOH HOH . D 3 HOH B 73 373 125 HOH HOH . D 3 HOH B 74 374 49 HOH HOH . D 3 HOH B 75 375 176 HOH HOH . D 3 HOH B 76 376 16 HOH HOH . D 3 HOH B 77 377 151 HOH HOH . D 3 HOH B 78 378 24 HOH HOH . D 3 HOH B 79 379 75 HOH HOH . D 3 HOH B 80 380 94 HOH HOH . D 3 HOH B 81 381 104 HOH HOH . D 3 HOH B 82 382 136 HOH HOH . D 3 HOH B 83 383 30 HOH HOH . D 3 HOH B 84 384 48 HOH HOH . D 3 HOH B 85 385 170 HOH HOH . D 3 HOH B 86 386 111 HOH HOH . D 3 HOH B 87 387 191 HOH HOH . D 3 HOH B 88 388 206 HOH HOH . D 3 HOH B 89 389 173 HOH HOH . D 3 HOH B 90 390 147 HOH HOH . D 3 HOH B 91 391 203 HOH HOH . D 3 HOH B 92 392 36 HOH HOH . D 3 HOH B 93 393 143 HOH HOH . D 3 HOH B 94 394 193 HOH HOH . D 3 HOH B 95 395 247 HOH HOH . D 3 HOH B 96 396 175 HOH HOH . D 3 HOH B 97 397 45 HOH HOH . D 3 HOH B 98 398 42 HOH HOH . D 3 HOH B 99 399 103 HOH HOH . D 3 HOH B 100 400 183 HOH HOH . D 3 HOH B 101 401 130 HOH HOH . D 3 HOH B 102 402 10 HOH HOH . D 3 HOH B 103 403 121 HOH HOH . D 3 HOH B 104 404 67 HOH HOH . D 3 HOH B 105 405 196 HOH HOH . D 3 HOH B 106 406 90 HOH HOH . D 3 HOH B 107 407 12 HOH HOH . D 3 HOH B 108 408 44 HOH HOH . D 3 HOH B 109 409 223 HOH HOH . D 3 HOH B 110 410 84 HOH HOH . D 3 HOH B 111 411 20 HOH HOH . D 3 HOH B 112 412 133 HOH HOH . D 3 HOH B 113 413 55 HOH HOH . D 3 HOH B 114 414 66 HOH HOH . D 3 HOH B 115 415 86 HOH HOH . D 3 HOH B 116 416 37 HOH HOH . D 3 HOH B 117 417 4 HOH HOH . D 3 HOH B 118 418 74 HOH HOH . D 3 HOH B 119 419 52 HOH HOH . D 3 HOH B 120 420 76 HOH HOH . D 3 HOH B 121 421 235 HOH HOH . D 3 HOH B 122 422 39 HOH HOH . D 3 HOH B 123 423 1 HOH HOH . D 3 HOH B 124 424 177 HOH HOH . D 3 HOH B 125 425 150 HOH HOH . D 3 HOH B 126 426 153 HOH HOH . D 3 HOH B 127 427 7 HOH HOH . D 3 HOH B 128 428 92 HOH HOH . D 3 HOH B 129 429 53 HOH HOH . D 3 HOH B 130 430 79 HOH HOH . D 3 HOH B 131 431 96 HOH HOH . D 3 HOH B 132 432 164 HOH HOH . D 3 HOH B 133 433 57 HOH HOH . D 3 HOH B 134 434 118 HOH HOH . D 3 HOH B 135 435 18 HOH HOH . D 3 HOH B 136 436 97 HOH HOH . D 3 HOH B 137 437 72 HOH HOH . D 3 HOH B 138 438 234 HOH HOH . D 3 HOH B 139 439 149 HOH HOH . D 3 HOH B 140 440 163 HOH HOH . D 3 HOH B 141 441 68 HOH HOH . D 3 HOH B 142 442 81 HOH HOH . D 3 HOH B 143 443 82 HOH HOH . D 3 HOH B 144 444 114 HOH HOH . D 3 HOH B 145 445 33 HOH HOH . D 3 HOH B 146 446 124 HOH HOH . D 3 HOH B 147 447 93 HOH HOH . D 3 HOH B 148 448 194 HOH HOH . D 3 HOH B 149 449 139 HOH HOH . D 3 HOH B 150 450 172 HOH HOH . D 3 HOH B 151 451 71 HOH HOH . D 3 HOH B 152 452 131 HOH HOH . D 3 HOH B 153 453 101 HOH HOH . D 3 HOH B 154 454 156 HOH HOH . D 3 HOH B 155 455 58 HOH HOH . D 3 HOH B 156 456 100 HOH HOH . D 3 HOH B 157 457 61 HOH HOH . D 3 HOH B 158 458 23 HOH HOH . D 3 HOH B 159 459 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 12.694 -29.613 -20.523 1 71.89 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . C 2 12.77 -28.427 -19.787 1 66.24 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . C 2 13.56 -30.651 -19.838 1 74.57 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . C 2 13.652 -31.752 -20.697 1 76.42 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . C 2 12.972 -31.067 -18.499 1 75.82 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . C 2 12.924 -32.485 -18.413 1 77.94 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 6 #