data_5CYX # _model_server_result.job_id KvECzcKbPluEwFYOnRyQVw _model_server_result.datetime_utc '2024-10-28 02:21:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5cyx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5CYX # _exptl.entry_id 5CYX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5CYX _cell.length_a 74.767 _cell.length_b 74.767 _cell.length_c 140.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CYX _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 74.767 129.500243 0 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -74.767 129.500243 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 188 A CYS 187 1_555 A SG CYS 202 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc1 A OE1 GLU 18 A GLU 17 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 A OE2 GLU 18 A GLU 17 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A OD1 ASP 67 A ASP 66 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A OE1 GLU 69 A GLU 68 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 A OE1 GLU 69 A GLU 68 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc6 A OE2 GLU 69 A GLU 68 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc7 A OD1 ASP 97 A ASP 96 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 A O ARG 98 A ARG 97 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc9 A OD1 ASN 99 A ASN 98 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 A OD2 ASP 100 A ASP 99 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc11 A OD1 ASP 100 A ASP 99 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc12 A O ASN 101 A ASN 100 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc13 A OE2 GLU 116 A GLU 115 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc14 A OD1 ASP 131 A ASP 130 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc15 A OD2 ASP 131 A ASP 130 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc16 A OD1 ASP 133 A ASP 132 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc17 A OD2 ASP 133 A ASP 132 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc18 A O ALA 137 A ALA 136 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc19 A OD2 ASP 189 A ASP 188 1_555 D CA CA . A CA 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc20 A OD1 ASP 214 A ASP 213 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc21 A O GLU 215 A GLU 214 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc22 A OD1 ASP 217 A ASP 216 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc23 A O LEU 218 A LEU 217 1_555 F CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc24 A OD1 ASP 248 A ASP 247 1_555 F CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc25 A OD1 ASP 250 A ASP 249 1_555 E CA CA . A CA 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc26 A OD2 ASP 250 A ASP 249 1_555 F CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc27 A OE1 GLU 304 A GLU 303 1_555 F CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc28 A OE2 GLU 304 A GLU 303 1_555 F CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc29 B CA CA . A CA 1001 1_555 H O HOH . A HOH 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc30 E CA CA . A CA 1004 1_555 H O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc31 F CA CA . A CA 1005 1_555 H O HOH . A HOH 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc32 F CA CA . A CA 1005 1_555 H O HOH . A HOH 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CYX _atom_sites.fract_transf_matrix[1][1] 0.013375 _atom_sites.fract_transf_matrix[1][2] 0.007722 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1001 CA CA . C 2 CA A 1 1002 1002 CA CA . D 2 CA A 1 1003 1003 CA CA . E 2 CA A 1 1004 1004 CA CA . F 2 CA A 1 1005 1005 CA CA . G 3 CL A 1 1006 1009 CL CL . H 4 HOH A 1 1101 46 HOH HOH . H 4 HOH A 2 1102 59 HOH HOH . H 4 HOH A 3 1103 153 HOH HOH . H 4 HOH A 4 1104 33 HOH HOH . H 4 HOH A 5 1105 21 HOH HOH . H 4 HOH A 6 1106 14 HOH HOH . H 4 HOH A 7 1107 29 HOH HOH . H 4 HOH A 8 1108 84 HOH HOH . H 4 HOH A 9 1109 3 HOH HOH . H 4 HOH A 10 1110 30 HOH HOH . H 4 HOH A 11 1111 161 HOH HOH . H 4 HOH A 12 1112 130 HOH HOH . H 4 HOH A 13 1113 110 HOH HOH . H 4 HOH A 14 1114 220 HOH HOH . H 4 HOH A 15 1115 109 HOH HOH . H 4 HOH A 16 1116 142 HOH HOH . H 4 HOH A 17 1117 15 HOH HOH . H 4 HOH A 18 1118 68 HOH HOH . H 4 HOH A 19 1119 165 HOH HOH . H 4 HOH A 20 1120 102 HOH HOH . H 4 HOH A 21 1121 113 HOH HOH . H 4 HOH A 22 1122 51 HOH HOH . H 4 HOH A 23 1123 31 HOH HOH . H 4 HOH A 24 1124 55 HOH HOH . H 4 HOH A 25 1125 219 HOH HOH . H 4 HOH A 26 1126 28 HOH HOH . H 4 HOH A 27 1127 39 HOH HOH . H 4 HOH A 28 1128 67 HOH HOH . H 4 HOH A 29 1129 10 HOH HOH . H 4 HOH A 30 1130 47 HOH HOH . H 4 HOH A 31 1131 108 HOH HOH . H 4 HOH A 32 1132 156 HOH HOH . H 4 HOH A 33 1133 54 HOH HOH . H 4 HOH A 34 1134 4 HOH HOH . H 4 HOH A 35 1135 176 HOH HOH . H 4 HOH A 36 1136 75 HOH HOH . H 4 HOH A 37 1137 12 HOH HOH . H 4 HOH A 38 1138 9 HOH HOH . H 4 HOH A 39 1139 60 HOH HOH . H 4 HOH A 40 1140 65 HOH HOH . H 4 HOH A 41 1141 25 HOH HOH . H 4 HOH A 42 1142 101 HOH HOH . H 4 HOH A 43 1143 32 HOH HOH . H 4 HOH A 44 1144 105 HOH HOH . H 4 HOH A 45 1145 52 HOH HOH . H 4 HOH A 46 1146 79 HOH HOH . H 4 HOH A 47 1147 35 HOH HOH . H 4 HOH A 48 1148 126 HOH HOH . H 4 HOH A 49 1149 83 HOH HOH . H 4 HOH A 50 1150 182 HOH HOH . H 4 HOH A 51 1151 63 HOH HOH . H 4 HOH A 52 1152 199 HOH HOH . H 4 HOH A 53 1153 11 HOH HOH . H 4 HOH A 54 1154 53 HOH HOH . H 4 HOH A 55 1155 82 HOH HOH . H 4 HOH A 56 1156 50 HOH HOH . H 4 HOH A 57 1157 8 HOH HOH . H 4 HOH A 58 1158 34 HOH HOH . H 4 HOH A 59 1159 16 HOH HOH . H 4 HOH A 60 1160 64 HOH HOH . H 4 HOH A 61 1161 112 HOH HOH . H 4 HOH A 62 1162 42 HOH HOH . H 4 HOH A 63 1163 144 HOH HOH . H 4 HOH A 64 1164 18 HOH HOH . H 4 HOH A 65 1165 56 HOH HOH . H 4 HOH A 66 1166 26 HOH HOH . H 4 HOH A 67 1167 140 HOH HOH . H 4 HOH A 68 1168 38 HOH HOH . H 4 HOH A 69 1169 218 HOH HOH . H 4 HOH A 70 1170 85 HOH HOH . H 4 HOH A 71 1171 41 HOH HOH . H 4 HOH A 72 1172 6 HOH HOH . H 4 HOH A 73 1173 23 HOH HOH . H 4 HOH A 74 1174 96 HOH HOH . H 4 HOH A 75 1175 43 HOH HOH . H 4 HOH A 76 1176 149 HOH HOH . H 4 HOH A 77 1177 99 HOH HOH . H 4 HOH A 78 1178 222 HOH HOH . H 4 HOH A 79 1179 40 HOH HOH . H 4 HOH A 80 1180 20 HOH HOH . H 4 HOH A 81 1181 98 HOH HOH . H 4 HOH A 82 1182 57 HOH HOH . H 4 HOH A 83 1183 13 HOH HOH . H 4 HOH A 84 1184 24 HOH HOH . H 4 HOH A 85 1185 27 HOH HOH . H 4 HOH A 86 1186 225 HOH HOH . H 4 HOH A 87 1187 62 HOH HOH . H 4 HOH A 88 1188 223 HOH HOH . H 4 HOH A 89 1189 94 HOH HOH . H 4 HOH A 90 1190 2 HOH HOH . H 4 HOH A 91 1191 107 HOH HOH . H 4 HOH A 92 1192 17 HOH HOH . H 4 HOH A 93 1193 103 HOH HOH . H 4 HOH A 94 1194 168 HOH HOH . H 4 HOH A 95 1195 221 HOH HOH . H 4 HOH A 96 1196 100 HOH HOH . H 4 HOH A 97 1197 78 HOH HOH . H 4 HOH A 98 1198 129 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.755 _atom_site.Cartn_y 95.887 _atom_site.Cartn_z 315.527 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 42.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #