data_5CZ0
#
_model_server_result.job_id            7hEw-JC9aSfPwElkwL8XRA 
_model_server_result.datetime_utc      '2024-11-26 18:44:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5cz0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":404}' 
#
_entry.id    5CZ0 
#
_exptl.entry_id    5CZ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.95 
_cell.angle_gamma         90 
_cell.entry_id            5CZ0 
_cell.length_a            73.85 
_cell.length_b            135.25 
_cell.length_c            76.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CZ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 63 A CYS 63 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc2 A NE2 HIS 270 A HIS 270 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc3 A OE2 GLU 304 A GLU 304 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 A OD2 ASP 324 A ASP 324 1_555 E MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc5 E MN MN . A MN 401 1_555 Q O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc6 B SG CYS 63 B CYS 63 1_555 J MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc7 B NE2 HIS 270 B HIS 270 1_555 J MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc8 B OE2 GLU 304 B GLU 304 1_555 J MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc9 B OD2 ASP 324 B ASP 324 1_555 J MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc10 C SG CYS 63 C CYS 63 1_555 L MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc11 C NE2 HIS 270 C HIS 270 1_555 L MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc12 C OE2 GLU 304 C GLU 304 1_555 L MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? 
metalc ? metalc13 C OD2 ASP 324 C ASP 324 1_555 L MN MN . C MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc14 L MN MN . C MN 401 1_555 S O HOH . C HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc15 D SG CYS 63 D CYS 63 1_555 N MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc16 D NE2 HIS 270 D HIS 270 1_555 N MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc17 D OE2 GLU 304 D GLU 304 1_555 N MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc18 D OD2 ASP 324 D ASP 324 1_555 N MN MN . D MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5CZ0 
_atom_sites.fract_transf_matrix[1][1]    0.013541 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001411 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007394 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013222 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MN A 1 401 1 MN MN . 
F 3 SO4 A 1 402 1 SO4 SO4 . 
G 4 PEP A 1 403 2 PEP PEP . 
H 5 EDO A 1 404 1 EDO EDO . 
I 5 EDO A 1 405 2 EDO EDO . 
J 2 MN B 1 401 4 MN MN . 
K 4 PEP B 1 402 3 PEP PEP . 
L 2 MN C 1 401 3 MN MN . 
M 4 PEP C 1 402 4 PEP PEP . 
N 2 MN D 1 401 2 MN MN . 
O 3 SO4 D 1 402 1 SO4 SO4 . 
P 4 PEP D 1 403 1 PEP PEP . 
Q 6 HOH A 1 501 32 HOH HOH . 
Q 6 HOH A 2 502 59 HOH HOH . 
Q 6 HOH A 3 503 14 HOH HOH . 
Q 6 HOH A 4 504 22 HOH HOH . 
Q 6 HOH A 5 505 52 HOH HOH . 
Q 6 HOH A 6 506 25 HOH HOH . 
Q 6 HOH A 7 507 103 HOH HOH . 
Q 6 HOH A 8 508 19 HOH HOH . 
Q 6 HOH A 9 509 18 HOH HOH . 
Q 6 HOH A 10 510 110 HOH HOH . 
Q 6 HOH A 11 511 61 HOH HOH . 
Q 6 HOH A 12 512 44 HOH HOH . 
Q 6 HOH A 13 513 69 HOH HOH . 
Q 6 HOH A 14 514 62 HOH HOH . 
Q 6 HOH A 15 515 9 HOH HOH . 
Q 6 HOH A 16 516 86 HOH HOH . 
Q 6 HOH A 17 517 35 HOH HOH . 
Q 6 HOH A 18 518 82 HOH HOH . 
Q 6 HOH A 19 519 3 HOH HOH . 
Q 6 HOH A 20 520 47 HOH HOH . 
Q 6 HOH A 21 521 83 HOH HOH . 
Q 6 HOH A 22 522 100 HOH HOH . 
Q 6 HOH A 23 523 70 HOH HOH . 
Q 6 HOH A 24 524 46 HOH HOH . 
Q 6 HOH A 25 525 85 HOH HOH . 
Q 6 HOH A 26 526 5 HOH HOH . 
Q 6 HOH A 27 527 106 HOH HOH . 
Q 6 HOH A 28 528 65 HOH HOH . 
Q 6 HOH A 29 529 97 HOH HOH . 
Q 6 HOH A 30 530 81 HOH HOH . 
Q 6 HOH A 31 531 58 HOH HOH . 
Q 6 HOH A 32 532 96 HOH HOH . 
Q 6 HOH A 33 533 50 HOH HOH . 
Q 6 HOH A 34 534 94 HOH HOH . 
Q 6 HOH A 35 535 28 HOH HOH . 
Q 6 HOH A 36 536 2 HOH HOH . 
Q 6 HOH A 37 537 73 HOH HOH . 
Q 6 HOH A 38 538 26 HOH HOH . 
Q 6 HOH A 39 539 38 HOH HOH . 
Q 6 HOH A 40 540 74 HOH HOH . 
Q 6 HOH A 41 541 71 HOH HOH . 
R 6 HOH B 1 501 37 HOH HOH . 
R 6 HOH B 2 502 17 HOH HOH . 
R 6 HOH B 3 503 99 HOH HOH . 
R 6 HOH B 4 504 107 HOH HOH . 
R 6 HOH B 5 505 109 HOH HOH . 
R 6 HOH B 6 506 15 HOH HOH . 
R 6 HOH B 7 507 63 HOH HOH . 
R 6 HOH B 8 508 75 HOH HOH . 
R 6 HOH B 9 509 64 HOH HOH . 
R 6 HOH B 10 510 80 HOH HOH . 
R 6 HOH B 11 511 39 HOH HOH . 
R 6 HOH B 12 512 89 HOH HOH . 
R 6 HOH B 13 513 112 HOH HOH . 
R 6 HOH B 14 514 88 HOH HOH . 
R 6 HOH B 15 515 84 HOH HOH . 
R 6 HOH B 16 516 43 HOH HOH . 
R 6 HOH B 17 517 56 HOH HOH . 
R 6 HOH B 18 518 8 HOH HOH . 
R 6 HOH B 19 519 42 HOH HOH . 
R 6 HOH B 20 520 95 HOH HOH . 
R 6 HOH B 21 521 27 HOH HOH . 
S 6 HOH C 1 501 13 HOH HOH . 
S 6 HOH C 2 502 41 HOH HOH . 
S 6 HOH C 3 503 105 HOH HOH . 
S 6 HOH C 4 504 1 HOH HOH . 
S 6 HOH C 5 505 31 HOH HOH . 
S 6 HOH C 6 506 66 HOH HOH . 
S 6 HOH C 7 507 20 HOH HOH . 
S 6 HOH C 8 508 54 HOH HOH . 
S 6 HOH C 9 509 79 HOH HOH . 
S 6 HOH C 10 510 34 HOH HOH . 
S 6 HOH C 11 511 111 HOH HOH . 
S 6 HOH C 12 512 53 HOH HOH . 
S 6 HOH C 13 513 90 HOH HOH . 
S 6 HOH C 14 514 108 HOH HOH . 
S 6 HOH C 15 515 12 HOH HOH . 
S 6 HOH C 16 516 72 HOH HOH . 
S 6 HOH C 17 517 36 HOH HOH . 
S 6 HOH C 18 518 98 HOH HOH . 
S 6 HOH C 19 519 10 HOH HOH . 
S 6 HOH C 20 520 24 HOH HOH . 
S 6 HOH C 21 521 87 HOH HOH . 
S 6 HOH C 22 522 45 HOH HOH . 
S 6 HOH C 23 523 101 HOH HOH . 
S 6 HOH C 24 524 92 HOH HOH . 
S 6 HOH C 25 525 68 HOH HOH . 
T 6 HOH D 1 501 4 HOH HOH . 
T 6 HOH D 2 502 49 HOH HOH . 
T 6 HOH D 3 503 33 HOH HOH . 
T 6 HOH D 4 504 23 HOH HOH . 
T 6 HOH D 5 505 104 HOH HOH . 
T 6 HOH D 6 506 60 HOH HOH . 
T 6 HOH D 7 507 48 HOH HOH . 
T 6 HOH D 8 508 51 HOH HOH . 
T 6 HOH D 9 509 16 HOH HOH . 
T 6 HOH D 10 510 6 HOH HOH . 
T 6 HOH D 11 511 7 HOH HOH . 
T 6 HOH D 12 512 40 HOH HOH . 
T 6 HOH D 13 513 91 HOH HOH . 
T 6 HOH D 14 514 29 HOH HOH . 
T 6 HOH D 15 515 57 HOH HOH . 
T 6 HOH D 16 516 21 HOH HOH . 
T 6 HOH D 17 517 55 HOH HOH . 
T 6 HOH D 18 518 76 HOH HOH . 
T 6 HOH D 19 519 11 HOH HOH . 
T 6 HOH D 20 520 93 HOH HOH . 
T 6 HOH D 21 521 30 HOH HOH . 
T 6 HOH D 22 522 67 HOH HOH . 
T 6 HOH D 23 523 102 HOH HOH . 
T 6 HOH D 24 524 78 HOH HOH . 
T 6 HOH D 25 525 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 5 -42.309 -2.549 -40.106 1 59.31 ? C1 EDO 404 A 1 
HETATM 2 O O1 EDO . . . H 5 -41.783 -3.874 -39.923 1 54.77 ? O1 EDO 404 A 1 
HETATM 3 C C2 EDO . . . H 5 -42.628 -2.288 -41.584 1 59.5 ? C2 EDO 404 A 1 
HETATM 4 O O2 EDO . . . H 5 -41.543 -1.602 -42.235 1 61.24 ? O2 EDO 404 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           4 
#