data_5CZD
#
_model_server_result.job_id            RzoStKQvyYm4rfGkBz7NRg 
_model_server_result.datetime_utc      '2024-11-14 18:58:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5czd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    5CZD 
#
_exptl.entry_id    5CZD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              224.213 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5CZD 
_cell.length_a            44.14 
_cell.length_b            68.23 
_cell.length_c            148.4 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CZD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 39 B SER 36 1_555 C P24 PNS . B PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale2 C S44 PNS . B PNS 101 1_555 D CAH 1N2 . B 1N2 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? 
#
_chem_comp.formula           'C10 H12 N2 O4' 
_chem_comp.formula_weight    224.213 
_chem_comp.id                1N2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "1,1'-ethane-1,2-diyldipyrrolidine-2,5-dione" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAD CAN 1N2 doub 1 n n 
CAN CAH 1N2 sing 2 n n 
CAN NAP 1N2 sing 3 n n 
CAH CAG 1N2 sing 4 n n 
NAP CAJ 1N2 sing 5 n n 
NAP CAM 1N2 sing 6 n n 
CAJ CAI 1N2 sing 7 n n 
CAG CAM 1N2 sing 8 n n 
CAM OAC 1N2 doub 9 n n 
OAB CAL 1N2 doub 10 n n 
CAI NAO 1N2 sing 11 n n 
CAL NAO 1N2 sing 12 n n 
CAL CAF 1N2 sing 13 n n 
NAO CAK 1N2 sing 14 n n 
CAF CAE 1N2 sing 15 n n 
CAK OAA 1N2 doub 16 n n 
CAK CAE 1N2 sing 17 n n 
CAE H1 1N2 sing 18 n n 
CAF H2 1N2 sing 19 n n 
CAI H3 1N2 sing 20 n n 
CAI H4 1N2 sing 21 n n 
CAJ H5 1N2 sing 22 n n 
CAJ H6 1N2 sing 23 n n 
CAG H7 1N2 sing 24 n n 
CAH H8 1N2 sing 25 n n 
CAE H9 1N2 sing 26 n n 
CAF H10 1N2 sing 27 n n 
CAG H11 1N2 sing 28 n n 
CAH H12 1N2 sing 29 n n 
#
_atom_sites.entry_id                     5CZD 
_atom_sites.fract_transf_matrix[1][1]    0.022655 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 PNS B 1 101 101 PNS PNS . 
D 4 1N2 B 1 102 102 1N2 1N2 . 
E 5 HOH A 1 401 32 HOH HOH . 
E 5 HOH A 2 402 31 HOH HOH . 
E 5 HOH A 3 403 19 HOH HOH . 
E 5 HOH A 4 404 34 HOH HOH . 
E 5 HOH A 5 405 37 HOH HOH . 
E 5 HOH A 6 406 33 HOH HOH . 
E 5 HOH A 7 407 15 HOH HOH . 
E 5 HOH A 8 408 46 HOH HOH . 
E 5 HOH A 9 409 43 HOH HOH . 
E 5 HOH A 10 410 24 HOH HOH . 
E 5 HOH A 11 411 1 HOH HOH . 
E 5 HOH A 12 412 27 HOH HOH . 
E 5 HOH A 13 413 36 HOH HOH . 
E 5 HOH A 14 414 14 HOH HOH . 
E 5 HOH A 15 415 71 HOH HOH . 
E 5 HOH A 16 416 13 HOH HOH . 
E 5 HOH A 17 417 44 HOH HOH . 
E 5 HOH A 18 418 6 HOH HOH . 
E 5 HOH A 19 419 10 HOH HOH . 
E 5 HOH A 20 420 2 HOH HOH . 
E 5 HOH A 21 421 28 HOH HOH . 
E 5 HOH A 22 422 17 HOH HOH . 
E 5 HOH A 23 423 53 HOH HOH . 
E 5 HOH A 24 424 40 HOH HOH . 
E 5 HOH A 25 425 25 HOH HOH . 
E 5 HOH A 26 426 4 HOH HOH . 
E 5 HOH A 27 427 20 HOH HOH . 
E 5 HOH A 28 428 5 HOH HOH . 
E 5 HOH A 29 429 18 HOH HOH . 
E 5 HOH A 30 430 77 HOH HOH . 
E 5 HOH A 31 431 9 HOH HOH . 
E 5 HOH A 32 432 3 HOH HOH . 
E 5 HOH A 33 433 11 HOH HOH . 
E 5 HOH A 34 434 60 HOH HOH . 
E 5 HOH A 35 435 22 HOH HOH . 
E 5 HOH A 36 436 26 HOH HOH . 
E 5 HOH A 37 437 59 HOH HOH . 
E 5 HOH A 38 438 16 HOH HOH . 
E 5 HOH A 39 439 8 HOH HOH . 
E 5 HOH A 40 440 38 HOH HOH . 
E 5 HOH A 41 441 50 HOH HOH . 
E 5 HOH A 42 442 30 HOH HOH . 
E 5 HOH A 43 443 73 HOH HOH . 
E 5 HOH A 44 444 21 HOH HOH . 
E 5 HOH A 45 445 23 HOH HOH . 
E 5 HOH A 46 446 7 HOH HOH . 
E 5 HOH A 47 447 49 HOH HOH . 
E 5 HOH A 48 448 61 HOH HOH . 
E 5 HOH A 49 449 39 HOH HOH . 
E 5 HOH A 50 450 29 HOH HOH . 
E 5 HOH A 51 451 75 HOH HOH . 
E 5 HOH A 52 452 35 HOH HOH . 
E 5 HOH A 53 453 58 HOH HOH . 
E 5 HOH A 54 454 42 HOH HOH . 
E 5 HOH A 55 455 76 HOH HOH . 
E 5 HOH A 56 456 51 HOH HOH . 
E 5 HOH A 57 457 57 HOH HOH . 
E 5 HOH A 58 458 41 HOH HOH . 
E 5 HOH A 59 459 48 HOH HOH . 
E 5 HOH A 60 460 47 HOH HOH . 
E 5 HOH A 61 461 72 HOH HOH . 
E 5 HOH A 62 462 56 HOH HOH . 
E 5 HOH A 63 463 74 HOH HOH . 
E 5 HOH A 64 464 12 HOH HOH . 
E 5 HOH A 65 465 55 HOH HOH . 
F 5 HOH B 1 201 52 HOH HOH . 
F 5 HOH B 2 202 68 HOH HOH . 
F 5 HOH B 3 203 64 HOH HOH . 
F 5 HOH B 4 204 70 HOH HOH . 
F 5 HOH B 5 205 67 HOH HOH . 
F 5 HOH B 6 206 54 HOH HOH . 
F 5 HOH B 7 207 45 HOH HOH . 
F 5 HOH B 8 208 66 HOH HOH . 
F 5 HOH B 9 209 65 HOH HOH . 
F 5 HOH B 10 210 62 HOH HOH . 
F 5 HOH B 11 211 63 HOH HOH . 
F 5 HOH B 12 212 69 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAA 1N2 . . . D 4 52.038 75.734 67.314 1 80.23 ? OAA 1N2 102 B 1 
HETATM 2 C CAK 1N2 . . . D 4 52.825 75.007 66.724 1 87.02 ? CAK 1N2 102 B 1 
HETATM 3 C CAE 1N2 . . . D 4 53.915 74.434 67.356 1 91.61 ? CAE 1N2 102 B 1 
HETATM 4 C CAF 1N2 . . . D 4 54.508 73.582 66.256 1 91.78 ? CAF 1N2 102 B 1 
HETATM 5 C CAL 1N2 . . . D 4 53.732 73.857 65.142 1 86.76 ? CAL 1N2 102 B 1 
HETATM 6 O OAB 1N2 . . . D 4 53.932 73.355 64.036 1 85.99 ? OAB 1N2 102 B 1 
HETATM 7 N NAO 1N2 . . . D 4 52.724 74.668 65.434 1 82.78 ? NAO 1N2 102 B 1 
HETATM 8 C CAI 1N2 . . . D 4 51.728 75.128 64.545 1 78.28 ? CAI 1N2 102 B 1 
HETATM 9 C CAJ 1N2 . . . D 4 51.384 74.015 63.505 1 83.93 ? CAJ 1N2 102 B 1 
HETATM 10 N NAP 1N2 . . . D 4 49.942 73.914 63.155 1 89.28 ? NAP 1N2 102 B 1 
HETATM 11 C CAM 1N2 . . . D 4 48.965 74.321 63.982 1 89.57 ? CAM 1N2 102 B 1 
HETATM 12 O OAC 1N2 . . . D 4 49.124 74.824 65.085 1 83.5 ? OAC 1N2 102 B 1 
HETATM 13 C CAG 1N2 . . . D 4 47.73 74.127 63.511 1 94.03 ? CAG 1N2 102 B 1 
HETATM 14 C CAH 1N2 . . . D 4 48.001 73.431 62.157 1 93.1 ? CAH 1N2 102 B 1 
HETATM 15 C CAN 1N2 . . . D 4 49.368 73.375 62.051 1 92.19 ? CAN 1N2 102 B 1 
HETATM 16 O OAD 1N2 . . . D 4 49.9 72.86 61.068 1 84.4 ? OAD 1N2 102 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           16 
#