data_5CZO # _model_server_result.job_id lHhXX9uHsNu3T4TjWT03AQ _model_server_result.datetime_utc '2025-03-13 16:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5czo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5CZO # _exptl.entry_id 5CZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.57 _cell.angle_gamma 90 _cell.entry_id 5CZO _cell.length_a 52.701 _cell.length_b 83.841 _cell.length_c 132.508 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 8 A ARG 7 1_555 A N MLY 9 A MLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C MLY 9 A MLY 8 1_555 A N PHE 10 A PHE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C SER 154 A SER 153 1_555 A N MLY 155 A MLY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MLY 155 A MLY 154 1_555 A N MLY 156 A MLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MLY 156 A MLY 155 1_555 A N TYR 157 A TYR 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 A C GLU 231 A GLU 230 1_555 A N MLY 232 A MLY 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MLY 232 A MLY 231 1_555 A N LYS 233 A LYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C CYS 256 A CYS 255 1_555 A N MLY 257 A MLY 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MLY 257 A MLY 256 1_555 A N ASN 258 A ASN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C GLU 263 A GLU 262 1_555 A N MLY 264 A MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 A C MLY 264 A MLY 263 1_555 A N PRO 265 A PRO 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale12 A C ILE 337 A ILE 336 1_555 A N MLY 338 A MLY 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 A C MLY 338 A MLY 337 1_555 A N LEU 339 A LEU 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 A C TYR 352 A TYR 351 1_555 A N MLY 353 A MLY 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 A C MLY 353 A MLY 352 1_555 A N ASN 354 A ASN 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C ILE 365 A ILE 364 1_555 A N MLY 366 A MLY 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MLY 366 A MLY 365 1_555 A N GLN 367 A GLN 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 B C ASN 68 C ASN 154 1_555 B N MLY 69 C MLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 B C MLY 69 C MLY 155 1_555 B N TYR 70 C TYR 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale20 B C TRP 79 C TRP 165 1_555 B N MLY 80 C MLY 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C MLY 80 C MLY 166 1_555 B N MET 81 C MET 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 C C ARG 8 B ARG 7 1_555 C N MLY 9 B MLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 C C MLY 9 B MLY 8 1_555 C N PHE 10 B PHE 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 C C SER 154 B SER 153 1_555 C N MLY 155 B MLY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale25 C C MLY 155 B MLY 154 1_555 C N MLY 156 B MLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 C C MLY 156 B MLY 155 1_555 C N TYR 157 B TYR 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 C C GLU 231 B GLU 230 1_555 C N MLY 232 B MLY 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale28 C C MLY 232 B MLY 231 1_555 C N LYS 233 B LYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale29 C C CYS 256 B CYS 255 1_555 C N MLY 257 B MLY 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale30 C C MLY 257 B MLY 256 1_555 C N ASN 258 B ASN 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 C C GLU 263 B GLU 262 1_555 C N MLY 264 B MLY 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale32 C C MLY 264 B MLY 263 1_555 C N PRO 265 B PRO 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale33 C C ILE 337 B ILE 336 1_555 C N MLY 338 B MLY 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale34 C C MLY 338 B MLY 337 1_555 C N LEU 339 B LEU 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale35 C C TYR 352 B TYR 351 1_555 C N MLY 353 B MLY 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale36 C C MLY 353 B MLY 352 1_555 C N ASN 354 B ASN 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale37 C C ILE 365 B ILE 364 1_555 C N MLY 366 B MLY 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale38 C C MLY 366 B MLY 365 1_555 C N GLN 367 B GLN 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale39 D C ASN 68 D ASN 154 1_555 D N MLY 69 D MLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale40 D C MLY 69 D MLY 155 1_555 D N TYR 70 D TYR 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale41 D C TRP 79 D TRP 165 1_555 D N MLY 80 D MLY 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale42 D C MLY 80 D MLY 166 1_555 D N MET 81 D MET 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B SG CYS 28 C CYS 114 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 B ND1 HIS 30 C HIS 116 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 B SG CYS 33 C CYS 119 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 B SG CYS 66 C CYS 152 1_555 E ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 D SG CYS 28 D CYS 114 1_555 F ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 D ND1 HIS 30 D HIS 116 1_555 F ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 D SG CYS 33 D CYS 119 1_555 F ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 D SG CYS 66 D CYS 152 1_555 F ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CZO _atom_sites.fract_transf_matrix[1][1] 0.018975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000852 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN C 1 201 2 ZN ZN . F 3 ZN D 1 201 1 ZN ZN . G 4 HOH A 1 401 24 HOH HOH . G 4 HOH A 2 402 10 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 15 HOH HOH . G 4 HOH A 5 405 12 HOH HOH . G 4 HOH A 6 406 35 HOH HOH . G 4 HOH A 7 407 4 HOH HOH . G 4 HOH A 8 408 16 HOH HOH . G 4 HOH A 9 409 17 HOH HOH . G 4 HOH A 10 410 8 HOH HOH . G 4 HOH A 11 411 22 HOH HOH . G 4 HOH A 12 412 19 HOH HOH . G 4 HOH A 13 413 9 HOH HOH . G 4 HOH A 14 414 20 HOH HOH . G 4 HOH A 15 415 7 HOH HOH . G 4 HOH A 16 416 5 HOH HOH . G 4 HOH A 17 417 1 HOH HOH . G 4 HOH A 18 418 2 HOH HOH . G 4 HOH A 19 419 14 HOH HOH . G 4 HOH A 20 420 11 HOH HOH . G 4 HOH A 21 421 34 HOH HOH . G 4 HOH A 22 422 13 HOH HOH . G 4 HOH A 23 423 21 HOH HOH . G 4 HOH A 24 424 18 HOH HOH . G 4 HOH A 25 425 6 HOH HOH . H 4 HOH C 1 301 38 HOH HOH . H 4 HOH C 2 302 36 HOH HOH . H 4 HOH C 3 303 37 HOH HOH . H 4 HOH C 4 304 23 HOH HOH . I 4 HOH B 1 401 31 HOH HOH . I 4 HOH B 2 402 33 HOH HOH . I 4 HOH B 3 403 27 HOH HOH . I 4 HOH B 4 404 30 HOH HOH . I 4 HOH B 5 405 25 HOH HOH . J 4 HOH D 1 301 32 HOH HOH . J 4 HOH D 2 302 28 HOH HOH . J 4 HOH D 3 303 26 HOH HOH . J 4 HOH D 4 304 29 HOH HOH . J 4 HOH D 5 305 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -43.585 _atom_site.Cartn_y -14.389 _atom_site.Cartn_z -12.529 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #