data_5CZU # _model_server_result.job_id jvS8yhufUzQCcnNMA2CcjA _model_server_result.datetime_utc '2024-12-12 04:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5czu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5CZU # _exptl.entry_id 5CZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5CZU _cell.length_a 181.07 _cell.length_b 181.07 _cell.length_c 181.07 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 119 A CYS 119 1_555 B C4 4LF . A 4LF 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc1 A OD1 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc2 A OD2 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A OD1 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OD2 ASP 80 A ASP 80 1_555 D CD CD . A CD 203 72_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc5 A OE1 GLN 82 A GLN 82 1_555 D CD CD . A CD 203 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc6 A OD2 ASP 127 A ASP 127 1_555 G CD CD . A CD 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc7 A OD2 ASP 127 A ASP 127 1_555 G CD CD . A CD 206 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc9 A OE1 GLU 130 A GLU 130 1_555 F CD CD . A CD 205 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc10 B O6 4LF . A 4LF 201 1_555 H FE FE . A FE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc11 B O5 4LF . A 4LF 201 1_555 H FE FE . A FE 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 B O6 4LF . A 4LF 201 1_555 H FE FE . A FE 207 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc13 B O5 4LF . A 4LF 201 1_555 H FE FE . A FE 207 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc14 D CD CD . A CD 203 1_555 J O HOH . A HOH 381 22_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc15 E CD CD . A CD 204 1_555 J O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc16 E CD CD . A CD 204 1_555 J O HOH . A HOH 319 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc17 E CD CD . A CD 204 1_555 J O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc18 E CD CD . A CD 204 1_555 J O HOH . A HOH 438 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc19 G CD CD . A CD 206 1_555 J O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc20 G CD CD . A CD 206 1_555 J O HOH . A HOH 319 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CZU _atom_sites.fract_transf_matrix[1][1] 0.005523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005523 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4LF A 1 201 200 4LF CC5 . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 CD A 1 203 1 CD CD . E 4 CD A 1 204 2 CD CD . F 4 CD A 1 205 3 CD CD . G 4 CD A 1 206 4 CD CD . H 5 FE A 1 207 1 FE FE . I 6 GOL A 1 208 1 GOL GOL . J 7 HOH A 1 301 156 HOH HOH . J 7 HOH A 2 302 143 HOH HOH . J 7 HOH A 3 303 174 HOH HOH . J 7 HOH A 4 304 153 HOH HOH . J 7 HOH A 5 305 161 HOH HOH . J 7 HOH A 6 306 169 HOH HOH . J 7 HOH A 7 307 44 HOH HOH . J 7 HOH A 8 308 145 HOH HOH . J 7 HOH A 9 309 149 HOH HOH . J 7 HOH A 10 310 78 HOH HOH . J 7 HOH A 11 311 167 HOH HOH . J 7 HOH A 12 312 43 HOH HOH . J 7 HOH A 13 313 114 HOH HOH . J 7 HOH A 14 314 15 HOH HOH . J 7 HOH A 15 315 175 HOH HOH . J 7 HOH A 16 316 164 HOH HOH . J 7 HOH A 17 317 118 HOH HOH . J 7 HOH A 18 318 49 HOH HOH . J 7 HOH A 19 319 65 HOH HOH . J 7 HOH A 20 320 138 HOH HOH . J 7 HOH A 21 321 53 HOH HOH . J 7 HOH A 22 322 183 HOH HOH . J 7 HOH A 23 323 64 HOH HOH . J 7 HOH A 24 324 109 HOH HOH . J 7 HOH A 25 325 86 HOH HOH . J 7 HOH A 26 326 93 HOH HOH . J 7 HOH A 27 327 89 HOH HOH . J 7 HOH A 28 328 11 HOH HOH . J 7 HOH A 29 329 26 HOH HOH . J 7 HOH A 30 330 111 HOH HOH . J 7 HOH A 31 331 71 HOH HOH . J 7 HOH A 32 332 92 HOH HOH . J 7 HOH A 33 333 113 HOH HOH . J 7 HOH A 34 334 74 HOH HOH . J 7 HOH A 35 335 170 HOH HOH . J 7 HOH A 36 336 4 HOH HOH . J 7 HOH A 37 337 10 HOH HOH . J 7 HOH A 38 338 144 HOH HOH . J 7 HOH A 39 339 23 HOH HOH . J 7 HOH A 40 340 160 HOH HOH . J 7 HOH A 41 341 32 HOH HOH . J 7 HOH A 42 342 178 HOH HOH . J 7 HOH A 43 343 117 HOH HOH . J 7 HOH A 44 344 41 HOH HOH . J 7 HOH A 45 345 17 HOH HOH . J 7 HOH A 46 346 29 HOH HOH . J 7 HOH A 47 347 52 HOH HOH . J 7 HOH A 48 348 5 HOH HOH . J 7 HOH A 49 349 180 HOH HOH . J 7 HOH A 50 350 97 HOH HOH . J 7 HOH A 51 351 13 HOH HOH . J 7 HOH A 52 352 56 HOH HOH . J 7 HOH A 53 353 9 HOH HOH . J 7 HOH A 54 354 12 HOH HOH . J 7 HOH A 55 355 25 HOH HOH . J 7 HOH A 56 356 77 HOH HOH . J 7 HOH A 57 357 2 HOH HOH . J 7 HOH A 58 358 37 HOH HOH . J 7 HOH A 59 359 127 HOH HOH . J 7 HOH A 60 360 80 HOH HOH . J 7 HOH A 61 361 22 HOH HOH . J 7 HOH A 62 362 88 HOH HOH . J 7 HOH A 63 363 1 HOH HOH . J 7 HOH A 64 364 19 HOH HOH . J 7 HOH A 65 365 90 HOH HOH . J 7 HOH A 66 366 8 HOH HOH . J 7 HOH A 67 367 84 HOH HOH . J 7 HOH A 68 368 122 HOH HOH . J 7 HOH A 69 369 48 HOH HOH . J 7 HOH A 70 370 39 HOH HOH . J 7 HOH A 71 371 20 HOH HOH . J 7 HOH A 72 372 30 HOH HOH . J 7 HOH A 73 373 46 HOH HOH . J 7 HOH A 74 374 16 HOH HOH . J 7 HOH A 75 375 45 HOH HOH . J 7 HOH A 76 376 66 HOH HOH . J 7 HOH A 77 377 7 HOH HOH . J 7 HOH A 78 378 82 HOH HOH . J 7 HOH A 79 379 112 HOH HOH . J 7 HOH A 80 380 120 HOH HOH . J 7 HOH A 81 381 179 HOH HOH . J 7 HOH A 82 382 147 HOH HOH . J 7 HOH A 83 383 68 HOH HOH . J 7 HOH A 84 384 76 HOH HOH . J 7 HOH A 85 385 14 HOH HOH . J 7 HOH A 86 386 85 HOH HOH . J 7 HOH A 87 387 119 HOH HOH . J 7 HOH A 88 388 40 HOH HOH . J 7 HOH A 89 389 99 HOH HOH . J 7 HOH A 90 390 94 HOH HOH . J 7 HOH A 91 391 108 HOH HOH . J 7 HOH A 92 392 18 HOH HOH . J 7 HOH A 93 393 123 HOH HOH . J 7 HOH A 94 394 142 HOH HOH . J 7 HOH A 95 395 28 HOH HOH . J 7 HOH A 96 396 34 HOH HOH . J 7 HOH A 97 397 69 HOH HOH . J 7 HOH A 98 398 115 HOH HOH . J 7 HOH A 99 399 51 HOH HOH . J 7 HOH A 100 400 33 HOH HOH . J 7 HOH A 101 401 181 HOH HOH . J 7 HOH A 102 402 3 HOH HOH . J 7 HOH A 103 403 129 HOH HOH . J 7 HOH A 104 404 60 HOH HOH . J 7 HOH A 105 405 121 HOH HOH . J 7 HOH A 106 406 31 HOH HOH . J 7 HOH A 107 407 73 HOH HOH . J 7 HOH A 108 408 35 HOH HOH . J 7 HOH A 109 409 173 HOH HOH . J 7 HOH A 110 410 21 HOH HOH . J 7 HOH A 111 411 72 HOH HOH . J 7 HOH A 112 412 81 HOH HOH . J 7 HOH A 113 413 70 HOH HOH . J 7 HOH A 114 414 133 HOH HOH . J 7 HOH A 115 415 139 HOH HOH . J 7 HOH A 116 416 58 HOH HOH . J 7 HOH A 117 417 146 HOH HOH . J 7 HOH A 118 418 50 HOH HOH . J 7 HOH A 119 419 36 HOH HOH . J 7 HOH A 120 420 106 HOH HOH . J 7 HOH A 121 421 116 HOH HOH . J 7 HOH A 122 422 24 HOH HOH . J 7 HOH A 123 423 42 HOH HOH . J 7 HOH A 124 424 141 HOH HOH . J 7 HOH A 125 425 79 HOH HOH . J 7 HOH A 126 426 57 HOH HOH . J 7 HOH A 127 427 59 HOH HOH . J 7 HOH A 128 428 137 HOH HOH . J 7 HOH A 129 429 182 HOH HOH . J 7 HOH A 130 430 128 HOH HOH . J 7 HOH A 131 431 135 HOH HOH . J 7 HOH A 132 432 101 HOH HOH . J 7 HOH A 133 433 6 HOH HOH . J 7 HOH A 134 434 140 HOH HOH . J 7 HOH A 135 435 102 HOH HOH . J 7 HOH A 136 436 157 HOH HOH . J 7 HOH A 137 437 75 HOH HOH . J 7 HOH A 138 438 163 HOH HOH . J 7 HOH A 139 439 61 HOH HOH . J 7 HOH A 140 440 148 HOH HOH . J 7 HOH A 141 441 151 HOH HOH . J 7 HOH A 142 442 166 HOH HOH . J 7 HOH A 143 443 96 HOH HOH . J 7 HOH A 144 444 38 HOH HOH . J 7 HOH A 145 445 98 HOH HOH . J 7 HOH A 146 446 155 HOH HOH . J 7 HOH A 147 447 105 HOH HOH . J 7 HOH A 148 448 54 HOH HOH . J 7 HOH A 149 449 47 HOH HOH . J 7 HOH A 150 450 91 HOH HOH . J 7 HOH A 151 451 67 HOH HOH . J 7 HOH A 152 452 83 HOH HOH . J 7 HOH A 153 453 132 HOH HOH . J 7 HOH A 154 454 134 HOH HOH . J 7 HOH A 155 455 150 HOH HOH . J 7 HOH A 156 456 27 HOH HOH . J 7 HOH A 157 457 158 HOH HOH . J 7 HOH A 158 458 172 HOH HOH . J 7 HOH A 159 459 154 HOH HOH . J 7 HOH A 160 460 130 HOH HOH . J 7 HOH A 161 461 107 HOH HOH . J 7 HOH A 162 462 176 HOH HOH . J 7 HOH A 163 463 110 HOH HOH . J 7 HOH A 164 464 159 HOH HOH . J 7 HOH A 165 465 126 HOH HOH . J 7 HOH A 166 466 63 HOH HOH . J 7 HOH A 167 467 95 HOH HOH . J 7 HOH A 168 468 55 HOH HOH . J 7 HOH A 169 469 104 HOH HOH . J 7 HOH A 170 470 136 HOH HOH . J 7 HOH A 171 471 168 HOH HOH . J 7 HOH A 172 472 171 HOH HOH . J 7 HOH A 173 473 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 48.643 _atom_site.Cartn_y 0 _atom_site.Cartn_z 41.887 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 25.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #