data_5CZV # _model_server_result.job_id BlMkLov-CnAL5QO-dkb-xg _model_server_result.datetime_utc '2024-11-22 12:39:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5czv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":5002}' # _entry.id 5CZV # _exptl.entry_id 5CZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.17 _cell.angle_gamma 90 _cell.entry_id 5CZV _cell.length_a 91.917 _cell.length_b 104.349 _cell.length_c 92.849 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5CZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 15 A CYS 1392 1_555 A SG CYS 28 A CYS 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 24 A CYS 1401 1_555 A SG CYS 40 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 51 A CYS 1428 1_555 A SG CYS 74 A CYS 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 56 A CYS 1433 1_555 A SG CYS 69 A CYS 1446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 65 A CYS 1442 1_555 A SG CYS 81 A CYS 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 A SG CYS 90 A CYS 1467 1_555 A SG CYS 116 A CYS 1493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf7 A SG CYS 98 A CYS 1475 1_555 A SG CYS 111 A CYS 1488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 A SG CYS 107 A CYS 1484 1_555 A SG CYS 123 A CYS 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 214 A CYS 1591 1_555 A SG CYS 223 A CYS 1600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 B SG CYS 143 H CYS 143 1_555 B SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 23 L CYS 23 1_555 C SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 61 A ASN 1438 1_555 G C1 NAG . A NAG 5004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A O LYS 18 A LYS 1395 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc2 A OD1 ASP 21 A ASP 1398 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A O ARG 23 A ARG 1400 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 A OD2 ASP 25 A ASP 1402 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 A OD1 ASP 36 A ASP 1413 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc6 A OD2 ASP 36 A ASP 1413 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 A OD2 ASP 39 A ASP 1416 1_555 D CA CA . A CA 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc8 A O LEU 59 A LEU 1436 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc9 A OD1 ASN 62 A ASN 1439 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc10 A O ARG 64 A ARG 1441 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 A OD2 ASP 66 A ASP 1443 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc12 A OD1 ASP 77 A ASP 1454 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 A OD2 ASP 77 A ASP 1454 1_555 E CA CA . A CA 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc14 A O HIS 101 A HIS 1478 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc15 A OD1 ASP 104 A ASP 1481 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc16 A O ARG 106 A ARG 1483 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc17 A OD2 ASP 108 A ASP 1485 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc18 A OD1 ASP 119 A ASP 1496 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc19 A OD2 ASP 119 A ASP 1496 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc20 A OD2 ASP 122 A ASP 1499 1_555 F CA CA . A CA 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5CZV _atom_sites.fract_transf_matrix[1][1] 0.010879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 5001 5001 CA CA . E 4 CA A 1 5002 5002 CA CA . F 4 CA A 1 5003 5003 CA CA . G 5 NAG A 1 5004 5004 NAG NAG . H 6 HOH A 1 5101 9 HOH HOH . H 6 HOH A 2 5102 1 HOH HOH . I 6 HOH H 1 301 8 HOH HOH . I 6 HOH H 2 302 7 HOH HOH . J 6 HOH L 1 301 5 HOH HOH . J 6 HOH L 2 302 3 HOH HOH . J 6 HOH L 3 303 2 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -1.803 _atom_site.Cartn_y -22.475 _atom_site.Cartn_z -27.936 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.08 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #