data_5CZY
#
_model_server_result.job_id            2gr282-2ALu7MgDU1fGccQ 
_model_server_result.datetime_utc      '2024-11-28 21:22:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5czy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":604}' 
#
_entry.id    5CZY 
#
_exptl.entry_id    5CZY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               solvent 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5CZY 
_cell.length_a            69.249 
_cell.length_b            69.249 
_cell.length_c            200.497 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5CZY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5CZY 
_atom_sites.fract_transf_matrix[1][1]    0.014441 
_atom_sites.fract_transf_matrix[1][2]    0.008337 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 601 802 GOL GOL . 
C 2 GOL A 1 602 803 GOL GOL . 
D 3 SAM A 1 603 601 SAM SAM . 
E 2 GOL A 1 604 801 GOL GOL . 
F 4 HOH A 1 701 106 HOH HOH . 
F 4 HOH A 2 702 200 HOH HOH . 
F 4 HOH A 3 703 224 HOH HOH . 
F 4 HOH A 4 704 36 HOH HOH . 
F 4 HOH A 5 705 67 HOH HOH . 
F 4 HOH A 6 706 193 HOH HOH . 
F 4 HOH A 7 707 174 HOH HOH . 
F 4 HOH A 8 708 31 HOH HOH . 
F 4 HOH A 9 709 172 HOH HOH . 
F 4 HOH A 10 710 8 HOH HOH . 
F 4 HOH A 11 711 58 HOH HOH . 
F 4 HOH A 12 712 137 HOH HOH . 
F 4 HOH A 13 713 6 HOH HOH . 
F 4 HOH A 14 714 92 HOH HOH . 
F 4 HOH A 15 715 87 HOH HOH . 
F 4 HOH A 16 716 24 HOH HOH . 
F 4 HOH A 17 717 139 HOH HOH . 
F 4 HOH A 18 718 66 HOH HOH . 
F 4 HOH A 19 719 119 HOH HOH . 
F 4 HOH A 20 720 118 HOH HOH . 
F 4 HOH A 21 721 104 HOH HOH . 
F 4 HOH A 22 722 100 HOH HOH . 
F 4 HOH A 23 723 55 HOH HOH . 
F 4 HOH A 24 724 93 HOH HOH . 
F 4 HOH A 25 725 206 HOH HOH . 
F 4 HOH A 26 726 23 HOH HOH . 
F 4 HOH A 27 727 27 HOH HOH . 
F 4 HOH A 28 728 56 HOH HOH . 
F 4 HOH A 29 729 198 HOH HOH . 
F 4 HOH A 30 730 65 HOH HOH . 
F 4 HOH A 31 731 231 HOH HOH . 
F 4 HOH A 32 732 1 HOH HOH . 
F 4 HOH A 33 733 98 HOH HOH . 
F 4 HOH A 34 734 123 HOH HOH . 
F 4 HOH A 35 735 202 HOH HOH . 
F 4 HOH A 36 736 43 HOH HOH . 
F 4 HOH A 37 737 75 HOH HOH . 
F 4 HOH A 38 738 84 HOH HOH . 
F 4 HOH A 39 739 37 HOH HOH . 
F 4 HOH A 40 740 227 HOH HOH . 
F 4 HOH A 41 741 76 HOH HOH . 
F 4 HOH A 42 742 78 HOH HOH . 
F 4 HOH A 43 743 5 HOH HOH . 
F 4 HOH A 44 744 10 HOH HOH . 
F 4 HOH A 45 745 13 HOH HOH . 
F 4 HOH A 46 746 71 HOH HOH . 
F 4 HOH A 47 747 96 HOH HOH . 
F 4 HOH A 48 748 94 HOH HOH . 
F 4 HOH A 49 749 16 HOH HOH . 
F 4 HOH A 50 750 114 HOH HOH . 
F 4 HOH A 51 751 157 HOH HOH . 
F 4 HOH A 52 752 79 HOH HOH . 
F 4 HOH A 53 753 49 HOH HOH . 
F 4 HOH A 54 754 207 HOH HOH . 
F 4 HOH A 55 755 54 HOH HOH . 
F 4 HOH A 56 756 14 HOH HOH . 
F 4 HOH A 57 757 95 HOH HOH . 
F 4 HOH A 58 758 2 HOH HOH . 
F 4 HOH A 59 759 167 HOH HOH . 
F 4 HOH A 60 760 102 HOH HOH . 
F 4 HOH A 61 761 183 HOH HOH . 
F 4 HOH A 62 762 40 HOH HOH . 
F 4 HOH A 63 763 229 HOH HOH . 
F 4 HOH A 64 764 20 HOH HOH . 
F 4 HOH A 65 765 9 HOH HOH . 
F 4 HOH A 66 766 39 HOH HOH . 
F 4 HOH A 67 767 47 HOH HOH . 
F 4 HOH A 68 768 3 HOH HOH . 
F 4 HOH A 69 769 109 HOH HOH . 
F 4 HOH A 70 770 48 HOH HOH . 
F 4 HOH A 71 771 141 HOH HOH . 
F 4 HOH A 72 772 19 HOH HOH . 
F 4 HOH A 73 773 28 HOH HOH . 
F 4 HOH A 74 774 22 HOH HOH . 
F 4 HOH A 75 775 166 HOH HOH . 
F 4 HOH A 76 776 35 HOH HOH . 
F 4 HOH A 77 777 61 HOH HOH . 
F 4 HOH A 78 778 21 HOH HOH . 
F 4 HOH A 79 779 11 HOH HOH . 
F 4 HOH A 80 780 44 HOH HOH . 
F 4 HOH A 81 781 161 HOH HOH . 
F 4 HOH A 82 782 185 HOH HOH . 
F 4 HOH A 83 783 68 HOH HOH . 
F 4 HOH A 84 784 168 HOH HOH . 
F 4 HOH A 85 785 147 HOH HOH . 
F 4 HOH A 86 786 107 HOH HOH . 
F 4 HOH A 87 787 15 HOH HOH . 
F 4 HOH A 88 788 116 HOH HOH . 
F 4 HOH A 89 789 201 HOH HOH . 
F 4 HOH A 90 790 63 HOH HOH . 
F 4 HOH A 91 791 7 HOH HOH . 
F 4 HOH A 92 792 197 HOH HOH . 
F 4 HOH A 93 793 190 HOH HOH . 
F 4 HOH A 94 794 199 HOH HOH . 
F 4 HOH A 95 795 4 HOH HOH . 
F 4 HOH A 96 796 191 HOH HOH . 
F 4 HOH A 97 797 182 HOH HOH . 
F 4 HOH A 98 798 221 HOH HOH . 
F 4 HOH A 99 799 30 HOH HOH . 
F 4 HOH A 100 800 192 HOH HOH . 
F 4 HOH A 101 801 153 HOH HOH . 
F 4 HOH A 102 802 50 HOH HOH . 
F 4 HOH A 103 803 131 HOH HOH . 
F 4 HOH A 104 804 238 HOH HOH . 
F 4 HOH A 105 805 152 HOH HOH . 
F 4 HOH A 106 806 74 HOH HOH . 
F 4 HOH A 107 807 228 HOH HOH . 
F 4 HOH A 108 808 125 HOH HOH . 
F 4 HOH A 109 809 59 HOH HOH . 
F 4 HOH A 110 810 220 HOH HOH . 
F 4 HOH A 111 811 159 HOH HOH . 
F 4 HOH A 112 812 150 HOH HOH . 
F 4 HOH A 113 813 195 HOH HOH . 
F 4 HOH A 114 814 26 HOH HOH . 
F 4 HOH A 115 815 135 HOH HOH . 
F 4 HOH A 116 816 149 HOH HOH . 
F 4 HOH A 117 817 70 HOH HOH . 
F 4 HOH A 118 818 83 HOH HOH . 
F 4 HOH A 119 819 17 HOH HOH . 
F 4 HOH A 120 820 179 HOH HOH . 
F 4 HOH A 121 821 33 HOH HOH . 
F 4 HOH A 122 822 72 HOH HOH . 
F 4 HOH A 123 823 73 HOH HOH . 
F 4 HOH A 124 824 62 HOH HOH . 
F 4 HOH A 125 825 236 HOH HOH . 
F 4 HOH A 126 826 148 HOH HOH . 
F 4 HOH A 127 827 80 HOH HOH . 
F 4 HOH A 128 828 25 HOH HOH . 
F 4 HOH A 129 829 160 HOH HOH . 
F 4 HOH A 130 830 132 HOH HOH . 
F 4 HOH A 131 831 53 HOH HOH . 
F 4 HOH A 132 832 151 HOH HOH . 
F 4 HOH A 133 833 45 HOH HOH . 
F 4 HOH A 134 834 127 HOH HOH . 
F 4 HOH A 135 835 97 HOH HOH . 
F 4 HOH A 136 836 81 HOH HOH . 
F 4 HOH A 137 837 219 HOH HOH . 
F 4 HOH A 138 838 204 HOH HOH . 
F 4 HOH A 139 839 209 HOH HOH . 
F 4 HOH A 140 840 216 HOH HOH . 
F 4 HOH A 141 841 133 HOH HOH . 
F 4 HOH A 142 842 91 HOH HOH . 
F 4 HOH A 143 843 82 HOH HOH . 
F 4 HOH A 144 844 171 HOH HOH . 
F 4 HOH A 145 845 112 HOH HOH . 
F 4 HOH A 146 846 225 HOH HOH . 
F 4 HOH A 147 847 126 HOH HOH . 
F 4 HOH A 148 848 42 HOH HOH . 
F 4 HOH A 149 849 117 HOH HOH . 
F 4 HOH A 150 850 77 HOH HOH . 
F 4 HOH A 151 851 57 HOH HOH . 
F 4 HOH A 152 852 101 HOH HOH . 
F 4 HOH A 153 853 18 HOH HOH . 
F 4 HOH A 154 854 143 HOH HOH . 
F 4 HOH A 155 855 239 HOH HOH . 
F 4 HOH A 156 856 210 HOH HOH . 
F 4 HOH A 157 857 130 HOH HOH . 
F 4 HOH A 158 858 214 HOH HOH . 
F 4 HOH A 159 859 60 HOH HOH . 
F 4 HOH A 160 860 38 HOH HOH . 
F 4 HOH A 161 861 128 HOH HOH . 
F 4 HOH A 162 862 64 HOH HOH . 
F 4 HOH A 163 863 90 HOH HOH . 
F 4 HOH A 164 864 180 HOH HOH . 
F 4 HOH A 165 865 32 HOH HOH . 
F 4 HOH A 166 866 51 HOH HOH . 
F 4 HOH A 167 867 156 HOH HOH . 
F 4 HOH A 168 868 29 HOH HOH . 
F 4 HOH A 169 869 129 HOH HOH . 
F 4 HOH A 170 870 233 HOH HOH . 
F 4 HOH A 171 871 122 HOH HOH . 
F 4 HOH A 172 872 164 HOH HOH . 
F 4 HOH A 173 873 187 HOH HOH . 
F 4 HOH A 174 874 145 HOH HOH . 
F 4 HOH A 175 875 110 HOH HOH . 
F 4 HOH A 176 876 234 HOH HOH . 
F 4 HOH A 177 877 181 HOH HOH . 
F 4 HOH A 178 878 46 HOH HOH . 
F 4 HOH A 179 879 12 HOH HOH . 
F 4 HOH A 180 880 88 HOH HOH . 
F 4 HOH A 181 881 41 HOH HOH . 
F 4 HOH A 182 882 211 HOH HOH . 
F 4 HOH A 183 883 215 HOH HOH . 
F 4 HOH A 184 884 223 HOH HOH . 
F 4 HOH A 185 885 146 HOH HOH . 
F 4 HOH A 186 886 120 HOH HOH . 
F 4 HOH A 187 887 188 HOH HOH . 
F 4 HOH A 188 888 113 HOH HOH . 
F 4 HOH A 189 889 86 HOH HOH . 
F 4 HOH A 190 890 136 HOH HOH . 
F 4 HOH A 191 891 138 HOH HOH . 
F 4 HOH A 192 892 203 HOH HOH . 
F 4 HOH A 193 893 115 HOH HOH . 
F 4 HOH A 194 894 194 HOH HOH . 
F 4 HOH A 195 895 105 HOH HOH . 
F 4 HOH A 196 896 208 HOH HOH . 
F 4 HOH A 197 897 158 HOH HOH . 
F 4 HOH A 198 898 34 HOH HOH . 
F 4 HOH A 199 899 237 HOH HOH . 
F 4 HOH A 200 900 218 HOH HOH . 
F 4 HOH A 201 901 69 HOH HOH . 
F 4 HOH A 202 902 111 HOH HOH . 
F 4 HOH A 203 903 89 HOH HOH . 
F 4 HOH A 204 904 230 HOH HOH . 
F 4 HOH A 205 905 103 HOH HOH . 
F 4 HOH A 206 906 222 HOH HOH . 
F 4 HOH A 207 907 189 HOH HOH . 
F 4 HOH A 208 908 170 HOH HOH . 
F 4 HOH A 209 909 235 HOH HOH . 
F 4 HOH A 210 910 226 HOH HOH . 
F 4 HOH A 211 911 154 HOH HOH . 
F 4 HOH A 212 912 108 HOH HOH . 
F 4 HOH A 213 913 176 HOH HOH . 
F 4 HOH A 214 914 196 HOH HOH . 
F 4 HOH A 215 915 169 HOH HOH . 
F 4 HOH A 216 916 175 HOH HOH . 
F 4 HOH A 217 917 217 HOH HOH . 
F 4 HOH A 218 918 162 HOH HOH . 
F 4 HOH A 219 919 212 HOH HOH . 
F 4 HOH A 220 920 144 HOH HOH . 
F 4 HOH A 221 921 205 HOH HOH . 
F 4 HOH A 222 922 121 HOH HOH . 
F 4 HOH A 223 923 184 HOH HOH . 
F 4 HOH A 224 924 173 HOH HOH . 
F 4 HOH A 225 925 165 HOH HOH . 
F 4 HOH A 226 926 134 HOH HOH . 
F 4 HOH A 227 927 85 HOH HOH . 
F 4 HOH A 228 928 186 HOH HOH . 
F 4 HOH A 229 929 124 HOH HOH . 
F 4 HOH A 230 930 52 HOH HOH . 
F 4 HOH A 231 931 140 HOH HOH . 
F 4 HOH A 232 932 232 HOH HOH . 
F 4 HOH A 233 933 142 HOH HOH . 
F 4 HOH A 234 934 155 HOH HOH . 
F 4 HOH A 235 935 163 HOH HOH . 
F 4 HOH A 236 936 177 HOH HOH . 
F 4 HOH A 237 937 213 HOH HOH . 
F 4 HOH A 238 938 99 HOH HOH . 
F 4 HOH A 239 939 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 32.956 -2.753 20.911 1 45.18 ? C1 GOL 604 A 1 
HETATM 2 O O1 GOL . . . E 2 33.309 -2.197 19.665 1 45.88 ? O1 GOL 604 A 1 
HETATM 3 C C2 GOL . . . E 2 34.012 -2.274 21.895 1 49.59 ? C2 GOL 604 A 1 
HETATM 4 O O2 GOL . . . E 2 34.262 -0.94 21.504 1 50.27 ? O2 GOL 604 A 1 
HETATM 5 C C3 GOL . . . E 2 33.585 -2.379 23.371 1 44.35 ? C3 GOL 604 A 1 
HETATM 6 O O3 GOL . . . E 2 34.691 -2.591 24.221 1 45 ? O3 GOL 604 A 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#