data_5D00 # _model_server_result.job_id vnM1OfSL9_duDoEvR6m2Ag _model_server_result.datetime_utc '2024-11-16 05:47:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5D00 # _exptl.entry_id 5D00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.28 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D00 _cell.length_a 90.66 _cell.length_b 164.627 _cell.length_c 97.729 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C12 H19 N O10' _chem_comp.formula_weight 337.28 _chem_comp.id GMT _chem_comp.mon_nstd_flag n _chem_comp.name '(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2S)-2-{[2-(acetylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid;(2S)-2-{[2-acetamido-2-deoxy-alpha-D-glucosyl]oxy}butanedioic acid;(2S)-2-{[2-acetamido-2-deoxy-D-glucosyl]oxy}butanedioic acid;(2S)-2-{[2-acetamido-2-deoxy-glucosyl]oxy}butanedioic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C6 GMT sing 129 n n C6 C5 GMT sing 130 n n O5 C5 GMT sing 131 n n O5 C1 GMT sing 132 n n C4 C5 GMT sing 133 n n C4 O4 GMT sing 134 n n C4 C3 GMT sing 135 n n O7 C7 GMT doub 136 n n C1 C2 GMT sing 137 n n C1 O1 GMT sing 138 n n C2 C3 GMT sing 139 n n C2 N2 GMT sing 140 n n O3 C3 GMT sing 141 n n O13 C10 GMT doub 142 n n C7 N2 GMT sing 143 n n C7 C8 GMT sing 144 n n C10 C9 GMT sing 145 n n C10 O14 GMT sing 146 n n O1 C9 GMT sing 147 n n C9 C11 GMT sing 148 n n O16 C12 GMT doub 149 n n C11 C12 GMT sing 150 n n C12 O15 GMT sing 151 n n O15 H1A GMT sing 152 n n C11 H2A GMT sing 153 n n C11 H3A GMT sing 154 n n C9 H4A GMT sing 155 n n O14 H5A GMT sing 156 n n C1 H1 GMT sing 157 n n C5 H5 GMT sing 158 n n C6 H61 GMT sing 159 n n C6 H62 GMT sing 160 n n O6 HO6 GMT sing 161 n n C4 H4 GMT sing 162 n n O4 HO4 GMT sing 163 n n C3 H3 GMT sing 164 n n O3 HO3 GMT sing 165 n n C2 H2 GMT sing 166 n n N2 HN2 GMT sing 167 n n C8 H81 GMT sing 168 n n C8 H82 GMT sing 169 n n C8 H83 GMT sing 170 n n # _atom_sites.entry_id 5D00 _atom_sites.fract_transf_matrix[1][1] 0.01103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMT A 1 401 2 GMT GMT . D 3 PO4 A 1 402 1 PO4 PO4 . E 2 GMT B 1 401 1 GMT GMT . F 4 U5P B 1 402 1 U5P U5P . G 5 HOH A 1 501 81 HOH HOH . G 5 HOH A 2 502 36 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 30 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 7 HOH HOH . G 5 HOH A 7 507 20 HOH HOH . G 5 HOH A 8 508 73 HOH HOH . G 5 HOH A 9 509 8 HOH HOH . G 5 HOH A 10 510 83 HOH HOH . G 5 HOH A 11 511 14 HOH HOH . G 5 HOH A 12 512 39 HOH HOH . G 5 HOH A 13 513 70 HOH HOH . G 5 HOH A 14 514 21 HOH HOH . G 5 HOH A 15 515 76 HOH HOH . G 5 HOH A 16 516 64 HOH HOH . G 5 HOH A 17 517 52 HOH HOH . G 5 HOH A 18 518 35 HOH HOH . G 5 HOH A 19 519 12 HOH HOH . G 5 HOH A 20 520 50 HOH HOH . G 5 HOH A 21 521 28 HOH HOH . G 5 HOH A 22 522 46 HOH HOH . G 5 HOH A 23 523 84 HOH HOH . G 5 HOH A 24 524 19 HOH HOH . G 5 HOH A 25 525 26 HOH HOH . G 5 HOH A 26 526 56 HOH HOH . G 5 HOH A 27 527 38 HOH HOH . G 5 HOH A 28 528 1 HOH HOH . G 5 HOH A 29 529 66 HOH HOH . G 5 HOH A 30 530 10 HOH HOH . G 5 HOH A 31 531 67 HOH HOH . G 5 HOH A 32 532 27 HOH HOH . G 5 HOH A 33 533 78 HOH HOH . G 5 HOH A 34 534 40 HOH HOH . G 5 HOH A 35 535 68 HOH HOH . G 5 HOH A 36 536 34 HOH HOH . G 5 HOH A 37 537 77 HOH HOH . G 5 HOH A 38 538 42 HOH HOH . G 5 HOH A 39 539 24 HOH HOH . G 5 HOH A 40 540 58 HOH HOH . G 5 HOH A 41 541 55 HOH HOH . G 5 HOH A 42 542 37 HOH HOH . G 5 HOH A 43 543 65 HOH HOH . H 5 HOH B 1 501 82 HOH HOH . H 5 HOH B 2 502 75 HOH HOH . H 5 HOH B 3 503 74 HOH HOH . H 5 HOH B 4 504 72 HOH HOH . H 5 HOH B 5 505 85 HOH HOH . H 5 HOH B 6 506 4 HOH HOH . H 5 HOH B 7 507 15 HOH HOH . H 5 HOH B 8 508 54 HOH HOH . H 5 HOH B 9 509 80 HOH HOH . H 5 HOH B 10 510 6 HOH HOH . H 5 HOH B 11 511 69 HOH HOH . H 5 HOH B 12 512 25 HOH HOH . H 5 HOH B 13 513 18 HOH HOH . H 5 HOH B 14 514 48 HOH HOH . H 5 HOH B 15 515 13 HOH HOH . H 5 HOH B 16 516 23 HOH HOH . H 5 HOH B 17 517 2 HOH HOH . H 5 HOH B 18 518 16 HOH HOH . H 5 HOH B 19 519 41 HOH HOH . H 5 HOH B 20 520 51 HOH HOH . H 5 HOH B 21 521 45 HOH HOH . H 5 HOH B 22 522 59 HOH HOH . H 5 HOH B 23 523 32 HOH HOH . H 5 HOH B 24 524 31 HOH HOH . H 5 HOH B 25 525 57 HOH HOH . H 5 HOH B 26 526 33 HOH HOH . H 5 HOH B 27 527 60 HOH HOH . H 5 HOH B 28 528 87 HOH HOH . H 5 HOH B 29 529 22 HOH HOH . H 5 HOH B 30 530 86 HOH HOH . H 5 HOH B 31 531 79 HOH HOH . H 5 HOH B 32 532 11 HOH HOH . H 5 HOH B 33 533 9 HOH HOH . H 5 HOH B 34 534 47 HOH HOH . H 5 HOH B 35 535 71 HOH HOH . H 5 HOH B 36 536 88 HOH HOH . H 5 HOH B 37 537 49 HOH HOH . H 5 HOH B 38 538 44 HOH HOH . H 5 HOH B 39 539 17 HOH HOH . H 5 HOH B 40 540 29 HOH HOH . H 5 HOH B 41 541 53 HOH HOH . H 5 HOH B 42 542 63 HOH HOH . H 5 HOH B 43 543 61 HOH HOH . H 5 HOH B 44 544 62 HOH HOH . H 5 HOH B 45 545 89 HOH HOH . H 5 HOH B 46 546 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O16 GMT . . . E 2 -15.572 25.203 20.165 1 71.33 ? O16 GMT 401 B 1 HETATM 2 C C12 GMT . . . E 2 -15.511 24.124 20.809 1 75.74 ? C12 GMT 401 B 1 HETATM 3 O O15 GMT . . . E 2 -16.254 23.86 21.788 1 82.7 ? O15 GMT 401 B 1 HETATM 4 C C11 GMT . . . E 2 -14.509 23.059 20.408 1 70.6 ? C11 GMT 401 B 1 HETATM 5 C C9 GMT . . . E 2 -14.781 22.574 18.98 1 66.04 ? C9 GMT 401 B 1 HETATM 6 C C10 GMT . . . E 2 -13.652 21.647 18.645 1 68.34 ? C10 GMT 401 B 1 HETATM 7 O O14 GMT . . . E 2 -13.638 20.482 19.134 1 77.25 ? O14 GMT 401 B 1 HETATM 8 O O13 GMT . . . E 2 -12.749 22.114 17.916 1 65.75 ? O13 GMT 401 B 1 HETATM 9 O O1 GMT . . . E 2 -16.075 21.948 18.85 1 54.94 ? O1 GMT 401 B 1 HETATM 10 C C1 GMT . . . E 2 -16.707 22.052 17.539 1 56.91 ? C1 GMT 401 B 1 HETATM 11 O O5 GMT . . . E 2 -16.19 21.076 16.602 1 51.46 ? O5 GMT 401 B 1 HETATM 12 C C5 GMT . . . E 2 -16.476 19.729 16.995 1 52.15 ? C5 GMT 401 B 1 HETATM 13 C C6 GMT . . . E 2 -15.635 18.733 16.176 1 49.54 ? C6 GMT 401 B 1 HETATM 14 O O6 GMT . . . E 2 -15.828 18.924 14.77 1 38.3 ? O6 GMT 401 B 1 HETATM 15 C C4 GMT . . . E 2 -17.987 19.52 16.905 1 50.32 ? C4 GMT 401 B 1 HETATM 16 O O4 GMT . . . E 2 -18.301 18.142 17.178 1 49.13 ? O4 GMT 401 B 1 HETATM 17 C C3 GMT . . . E 2 -18.7 20.487 17.886 1 50.16 ? C3 GMT 401 B 1 HETATM 18 O O3 GMT . . . E 2 -20.146 20.358 17.774 1 42.76 ? O3 GMT 401 B 1 HETATM 19 C C2 GMT . . . E 2 -18.242 21.922 17.605 1 48.66 ? C2 GMT 401 B 1 HETATM 20 N N2 GMT . . . E 2 -18.677 22.867 18.663 1 53.23 ? N2 GMT 401 B 1 HETATM 21 C C7 GMT . . . E 2 -19.452 23.924 18.434 1 48.29 ? C7 GMT 401 B 1 HETATM 22 O O7 GMT . . . E 2 -19.863 24.169 17.322 1 43.97 ? O7 GMT 401 B 1 HETATM 23 C C8 GMT . . . E 2 -19.817 24.81 19.593 1 48.52 ? C8 GMT 401 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #