data_5D00 # _model_server_result.job_id EyziUfxB91RvIaPTCIp2sg _model_server_result.datetime_utc '2024-12-03 23:10:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5D00 # _exptl.entry_id 5D00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D00 _cell.length_a 90.66 _cell.length_b 164.627 _cell.length_c 97.729 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 302 n n P O2 PO4 sing 303 n n P O3 PO4 sing 304 n n P O4 PO4 sing 305 n n # _atom_sites.entry_id 5D00 _atom_sites.fract_transf_matrix[1][1] 0.01103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMT A 1 401 2 GMT GMT . D 3 PO4 A 1 402 1 PO4 PO4 . E 2 GMT B 1 401 1 GMT GMT . F 4 U5P B 1 402 1 U5P U5P . G 5 HOH A 1 501 81 HOH HOH . G 5 HOH A 2 502 36 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 30 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 7 HOH HOH . G 5 HOH A 7 507 20 HOH HOH . G 5 HOH A 8 508 73 HOH HOH . G 5 HOH A 9 509 8 HOH HOH . G 5 HOH A 10 510 83 HOH HOH . G 5 HOH A 11 511 14 HOH HOH . G 5 HOH A 12 512 39 HOH HOH . G 5 HOH A 13 513 70 HOH HOH . G 5 HOH A 14 514 21 HOH HOH . G 5 HOH A 15 515 76 HOH HOH . G 5 HOH A 16 516 64 HOH HOH . G 5 HOH A 17 517 52 HOH HOH . G 5 HOH A 18 518 35 HOH HOH . G 5 HOH A 19 519 12 HOH HOH . G 5 HOH A 20 520 50 HOH HOH . G 5 HOH A 21 521 28 HOH HOH . G 5 HOH A 22 522 46 HOH HOH . G 5 HOH A 23 523 84 HOH HOH . G 5 HOH A 24 524 19 HOH HOH . G 5 HOH A 25 525 26 HOH HOH . G 5 HOH A 26 526 56 HOH HOH . G 5 HOH A 27 527 38 HOH HOH . G 5 HOH A 28 528 1 HOH HOH . G 5 HOH A 29 529 66 HOH HOH . G 5 HOH A 30 530 10 HOH HOH . G 5 HOH A 31 531 67 HOH HOH . G 5 HOH A 32 532 27 HOH HOH . G 5 HOH A 33 533 78 HOH HOH . G 5 HOH A 34 534 40 HOH HOH . G 5 HOH A 35 535 68 HOH HOH . G 5 HOH A 36 536 34 HOH HOH . G 5 HOH A 37 537 77 HOH HOH . G 5 HOH A 38 538 42 HOH HOH . G 5 HOH A 39 539 24 HOH HOH . G 5 HOH A 40 540 58 HOH HOH . G 5 HOH A 41 541 55 HOH HOH . G 5 HOH A 42 542 37 HOH HOH . G 5 HOH A 43 543 65 HOH HOH . H 5 HOH B 1 501 82 HOH HOH . H 5 HOH B 2 502 75 HOH HOH . H 5 HOH B 3 503 74 HOH HOH . H 5 HOH B 4 504 72 HOH HOH . H 5 HOH B 5 505 85 HOH HOH . H 5 HOH B 6 506 4 HOH HOH . H 5 HOH B 7 507 15 HOH HOH . H 5 HOH B 8 508 54 HOH HOH . H 5 HOH B 9 509 80 HOH HOH . H 5 HOH B 10 510 6 HOH HOH . H 5 HOH B 11 511 69 HOH HOH . H 5 HOH B 12 512 25 HOH HOH . H 5 HOH B 13 513 18 HOH HOH . H 5 HOH B 14 514 48 HOH HOH . H 5 HOH B 15 515 13 HOH HOH . H 5 HOH B 16 516 23 HOH HOH . H 5 HOH B 17 517 2 HOH HOH . H 5 HOH B 18 518 16 HOH HOH . H 5 HOH B 19 519 41 HOH HOH . H 5 HOH B 20 520 51 HOH HOH . H 5 HOH B 21 521 45 HOH HOH . H 5 HOH B 22 522 59 HOH HOH . H 5 HOH B 23 523 32 HOH HOH . H 5 HOH B 24 524 31 HOH HOH . H 5 HOH B 25 525 57 HOH HOH . H 5 HOH B 26 526 33 HOH HOH . H 5 HOH B 27 527 60 HOH HOH . H 5 HOH B 28 528 87 HOH HOH . H 5 HOH B 29 529 22 HOH HOH . H 5 HOH B 30 530 86 HOH HOH . H 5 HOH B 31 531 79 HOH HOH . H 5 HOH B 32 532 11 HOH HOH . H 5 HOH B 33 533 9 HOH HOH . H 5 HOH B 34 534 47 HOH HOH . H 5 HOH B 35 535 71 HOH HOH . H 5 HOH B 36 536 88 HOH HOH . H 5 HOH B 37 537 49 HOH HOH . H 5 HOH B 38 538 44 HOH HOH . H 5 HOH B 39 539 17 HOH HOH . H 5 HOH B 40 540 29 HOH HOH . H 5 HOH B 41 541 53 HOH HOH . H 5 HOH B 42 542 63 HOH HOH . H 5 HOH B 43 543 61 HOH HOH . H 5 HOH B 44 544 62 HOH HOH . H 5 HOH B 45 545 89 HOH HOH . H 5 HOH B 46 546 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 17.046 54.924 19.183 0.5 28.89 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . D 3 16.996 54.944 17.714 0.5 32.19 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . D 3 18.427 55.308 19.531 0.5 28.23 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . D 3 16.611 53.619 19.7 0.5 32.9 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . D 3 16.067 55.84 19.796 0.5 30.17 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #