data_5D0C # _model_server_result.job_id qOO0AQ55lVS9o5i2gxxoVg _model_server_result.datetime_utc '2024-12-23 16:47:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d0c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5D0C # _exptl.entry_id 5D0C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.74 _cell.angle_gamma 90 _cell.entry_id 5D0C _cell.length_a 30.03 _cell.length_b 46.27 _cell.length_c 47.44 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D0C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 140 n n C1 C2 EDO sing 141 n n C1 H11 EDO sing 142 n n C1 H12 EDO sing 143 n n O1 HO1 EDO sing 144 n n C2 O2 EDO sing 145 n n C2 H21 EDO sing 146 n n C2 H22 EDO sing 147 n n O2 HO2 EDO sing 148 n n # _atom_sites.entry_id 5D0C _atom_sites.fract_transf_matrix[1][1] 0.0333 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 201 1 NO3 NO3 . C 2 NO3 A 1 202 2 NO3 NO3 . D 2 NO3 A 1 203 3 NO3 NO3 . E 3 EDO A 1 204 1 EDO EDO . F 3 EDO A 1 205 2 EDO EDO . G 4 E0B A 1 206 1 E0B E0B . H 5 GOL A 1 207 1 GOL GOL . I 6 HOH A 1 301 98 HOH HOH . I 6 HOH A 2 302 27 HOH HOH . I 6 HOH A 3 303 16 HOH HOH . I 6 HOH A 4 304 99 HOH HOH . I 6 HOH A 5 305 47 HOH HOH . I 6 HOH A 6 306 100 HOH HOH . I 6 HOH A 7 307 24 HOH HOH . I 6 HOH A 8 308 95 HOH HOH . I 6 HOH A 9 309 74 HOH HOH . I 6 HOH A 10 310 77 HOH HOH . I 6 HOH A 11 311 54 HOH HOH . I 6 HOH A 12 312 23 HOH HOH . I 6 HOH A 13 313 17 HOH HOH . I 6 HOH A 14 314 58 HOH HOH . I 6 HOH A 15 315 9 HOH HOH . I 6 HOH A 16 316 76 HOH HOH . I 6 HOH A 17 317 51 HOH HOH . I 6 HOH A 18 318 88 HOH HOH . I 6 HOH A 19 319 82 HOH HOH . I 6 HOH A 20 320 68 HOH HOH . I 6 HOH A 21 321 42 HOH HOH . I 6 HOH A 22 322 18 HOH HOH . I 6 HOH A 23 323 14 HOH HOH . I 6 HOH A 24 324 62 HOH HOH . I 6 HOH A 25 325 20 HOH HOH . I 6 HOH A 26 326 116 HOH HOH . I 6 HOH A 27 327 45 HOH HOH . I 6 HOH A 28 328 63 HOH HOH . I 6 HOH A 29 329 29 HOH HOH . I 6 HOH A 30 330 102 HOH HOH . I 6 HOH A 31 331 48 HOH HOH . I 6 HOH A 32 332 12 HOH HOH . I 6 HOH A 33 333 6 HOH HOH . I 6 HOH A 34 334 103 HOH HOH . I 6 HOH A 35 335 91 HOH HOH . I 6 HOH A 36 336 13 HOH HOH . I 6 HOH A 37 337 60 HOH HOH . I 6 HOH A 38 338 15 HOH HOH . I 6 HOH A 39 339 44 HOH HOH . I 6 HOH A 40 340 52 HOH HOH . I 6 HOH A 41 341 79 HOH HOH . I 6 HOH A 42 342 65 HOH HOH . I 6 HOH A 43 343 59 HOH HOH . I 6 HOH A 44 344 89 HOH HOH . I 6 HOH A 45 345 41 HOH HOH . I 6 HOH A 46 346 10 HOH HOH . I 6 HOH A 47 347 7 HOH HOH . I 6 HOH A 48 348 4 HOH HOH . I 6 HOH A 49 349 46 HOH HOH . I 6 HOH A 50 350 3 HOH HOH . I 6 HOH A 51 351 32 HOH HOH . I 6 HOH A 52 352 90 HOH HOH . I 6 HOH A 53 353 81 HOH HOH . I 6 HOH A 54 354 86 HOH HOH . I 6 HOH A 55 355 30 HOH HOH . I 6 HOH A 56 356 1 HOH HOH . I 6 HOH A 57 357 35 HOH HOH . I 6 HOH A 58 358 5 HOH HOH . I 6 HOH A 59 359 22 HOH HOH . I 6 HOH A 60 360 66 HOH HOH . I 6 HOH A 61 361 75 HOH HOH . I 6 HOH A 62 362 106 HOH HOH . I 6 HOH A 63 363 97 HOH HOH . I 6 HOH A 64 364 31 HOH HOH . I 6 HOH A 65 365 107 HOH HOH . I 6 HOH A 66 366 39 HOH HOH . I 6 HOH A 67 367 11 HOH HOH . I 6 HOH A 68 368 55 HOH HOH . I 6 HOH A 69 369 83 HOH HOH . I 6 HOH A 70 370 19 HOH HOH . I 6 HOH A 71 371 80 HOH HOH . I 6 HOH A 72 372 70 HOH HOH . I 6 HOH A 73 373 53 HOH HOH . I 6 HOH A 74 374 67 HOH HOH . I 6 HOH A 75 375 64 HOH HOH . I 6 HOH A 76 376 34 HOH HOH . I 6 HOH A 77 377 50 HOH HOH . I 6 HOH A 78 378 33 HOH HOH . I 6 HOH A 79 379 40 HOH HOH . I 6 HOH A 80 380 71 HOH HOH . I 6 HOH A 81 381 110 HOH HOH . I 6 HOH A 82 382 69 HOH HOH . I 6 HOH A 83 383 105 HOH HOH . I 6 HOH A 84 384 104 HOH HOH . I 6 HOH A 85 385 101 HOH HOH . I 6 HOH A 86 386 84 HOH HOH . I 6 HOH A 87 387 96 HOH HOH . I 6 HOH A 88 388 57 HOH HOH . I 6 HOH A 89 389 56 HOH HOH . I 6 HOH A 90 390 49 HOH HOH . I 6 HOH A 91 391 2 HOH HOH . I 6 HOH A 92 392 21 HOH HOH . I 6 HOH A 93 393 8 HOH HOH . I 6 HOH A 94 394 43 HOH HOH . I 6 HOH A 95 395 113 HOH HOH . I 6 HOH A 96 396 92 HOH HOH . I 6 HOH A 97 397 111 HOH HOH . I 6 HOH A 98 398 118 HOH HOH . I 6 HOH A 99 399 78 HOH HOH . I 6 HOH A 100 400 93 HOH HOH . I 6 HOH A 101 401 94 HOH HOH . I 6 HOH A 102 402 119 HOH HOH . I 6 HOH A 103 403 87 HOH HOH . I 6 HOH A 104 404 38 HOH HOH . I 6 HOH A 105 405 108 HOH HOH . I 6 HOH A 106 406 73 HOH HOH . I 6 HOH A 107 407 72 HOH HOH . I 6 HOH A 108 408 25 HOH HOH . I 6 HOH A 109 409 37 HOH HOH . I 6 HOH A 110 410 117 HOH HOH . I 6 HOH A 111 411 115 HOH HOH . I 6 HOH A 112 412 26 HOH HOH . I 6 HOH A 113 413 61 HOH HOH . I 6 HOH A 114 414 114 HOH HOH . I 6 HOH A 115 415 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 17.621 8.026 12.108 1 33.04 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 3 16.423 7.602 11.449 1 31.56 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 3 17.311 9.107 13.139 1 34.79 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 3 17.932 8.753 14.389 1 34.62 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #