data_5D10
#
_model_server_result.job_id            nt-Kt54RMGU93UyLIlK_9w 
_model_server_result.datetime_utc      '2024-11-24 11:30:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d10 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5D10 
#
_exptl.entry_id    5D10 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              434.494 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[4-({4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}oxy)phenyl]prop-2-enamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         79.2 
_cell.angle_beta          88.1 
_cell.angle_gamma         90.1 
_cell.entry_id            5D10 
_cell.length_a            41.9 
_cell.length_b            63.5 
_cell.length_c            76.6 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D10 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C22 H26 N8 O2' 
_chem_comp.formula_weight    434.494 
_chem_comp.id                563 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[4-({4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl}oxy)phenyl]prop-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC NBE 563 sing 1 n n 
CAL NBE 563 sing 2 n n 
CAL CAN 563 sing 3 n n 
NBE CAM 563 sing 4 n n 
CAN NBF 563 sing 5 n n 
CAH CAF 563 doub 6 n y 
CAH CAZ 563 sing 7 n y 
CAF CAY 563 sing 8 n y 
NBF C4 563 sing 9 n n 
NBF CAO 563 sing 10 n n 
CAM CAO 563 sing 11 n n 
N3 C4 563 doub 12 n y 
N3 C2 563 sing 13 n y 
OAV CAZ 563 sing 14 n n 
OAV C2 563 sing 15 n n 
C4 C5 563 sing 16 n y 
CAZ CAI 563 doub 17 n y 
C2 N1 563 doub 18 n y 
CAY NAS 563 sing 19 n n 
CAY CAG 563 doub 20 n y 
C5 C6 563 doub 21 n y 
NAS CAW 563 sing 22 n n 
N1 C6 563 sing 23 n y 
C6 NAT 563 sing 24 n n 
CAI CAG 563 sing 25 n y 
CAW OAD 563 doub 26 n n 
CAW CAE 563 sing 27 n n 
CAE CAA 563 doub 28 n n 
NAT CBA 563 sing 29 n n 
CBA CAJ 563 sing 30 n y 
CBA NAP 563 doub 31 n y 
CAJ CAX 563 doub 32 n y 
NAP NAU 563 sing 33 n y 
CAX NAU 563 sing 34 n y 
CAX CAB 563 sing 35 n n 
C5 H1 563 sing 36 n n 
CAN H2 563 sing 37 n n 
CAN H3 563 sing 38 n n 
CAL H4 563 sing 39 n n 
CAL H5 563 sing 40 n n 
CAC H7 563 sing 41 n n 
CAC H8 563 sing 42 n n 
CAC H9 563 sing 43 n n 
CAM H10 563 sing 44 n n 
CAM H11 563 sing 45 n n 
CAO H12 563 sing 46 n n 
CAO H13 563 sing 47 n n 
NAT H14 563 sing 48 n n 
CAJ H15 563 sing 49 n n 
CAB H16 563 sing 50 n n 
CAB H17 563 sing 51 n n 
CAB H18 563 sing 52 n n 
NAU H19 563 sing 53 n n 
CAI H20 563 sing 54 n n 
CAG H21 563 sing 55 n n 
CAH H22 563 sing 56 n n 
CAF H23 563 sing 57 n n 
NAS H24 563 sing 58 n n 
CAE H25 563 sing 59 n n 
CAA H27 563 sing 60 n n 
CAA H28 563 sing 61 n n 
#
_atom_sites.entry_id                     5D10 
_atom_sites.fract_transf_matrix[1][1]    0.023866 
_atom_sites.fract_transf_matrix[1][2]    0.000042 
_atom_sites.fract_transf_matrix[1][3]    -0.000814 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015748 
_atom_sites.fract_transf_matrix[2][3]    -0.003007 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 563 A 1 601 2 563 DRG . 
D 2 563 B 1 601 3 563 DRG . 
E 3 HOH A 1 701 31 HOH HOH . 
E 3 HOH A 2 702 103 HOH HOH . 
E 3 HOH A 3 703 126 HOH HOH . 
E 3 HOH A 4 704 127 HOH HOH . 
E 3 HOH A 5 705 74 HOH HOH . 
E 3 HOH A 6 706 102 HOH HOH . 
E 3 HOH A 7 707 32 HOH HOH . 
E 3 HOH A 8 708 48 HOH HOH . 
E 3 HOH A 9 709 45 HOH HOH . 
E 3 HOH A 10 710 9 HOH HOH . 
E 3 HOH A 11 711 15 HOH HOH . 
E 3 HOH A 12 712 126 HOH HOH . 
E 3 HOH A 13 713 60 HOH HOH . 
E 3 HOH A 14 714 30 HOH HOH . 
E 3 HOH A 15 715 129 HOH HOH . 
E 3 HOH A 16 716 22 HOH HOH . 
E 3 HOH A 17 717 41 HOH HOH . 
E 3 HOH A 18 718 39 HOH HOH . 
E 3 HOH A 19 719 74 HOH HOH . 
E 3 HOH A 20 720 57 HOH HOH . 
E 3 HOH A 21 721 63 HOH HOH . 
E 3 HOH A 22 722 44 HOH HOH . 
E 3 HOH A 23 723 13 HOH HOH . 
E 3 HOH A 24 724 139 HOH HOH . 
E 3 HOH A 25 725 7 HOH HOH . 
E 3 HOH A 26 726 121 HOH HOH . 
E 3 HOH A 27 727 52 HOH HOH . 
E 3 HOH A 28 728 29 HOH HOH . 
E 3 HOH A 29 729 36 HOH HOH . 
E 3 HOH A 30 730 94 HOH HOH . 
E 3 HOH A 31 731 29 HOH HOH . 
E 3 HOH A 32 732 65 HOH HOH . 
E 3 HOH A 33 733 56 HOH HOH . 
E 3 HOH A 34 734 128 HOH HOH . 
E 3 HOH A 35 735 78 HOH HOH . 
E 3 HOH A 36 736 104 HOH HOH . 
E 3 HOH A 37 737 41 HOH HOH . 
E 3 HOH A 38 738 55 HOH HOH . 
E 3 HOH A 39 739 101 HOH HOH . 
E 3 HOH A 40 740 132 HOH HOH . 
E 3 HOH A 41 741 23 HOH HOH . 
E 3 HOH A 42 742 153 HOH HOH . 
E 3 HOH A 43 743 77 HOH HOH . 
E 3 HOH A 44 744 80 HOH HOH . 
E 3 HOH A 45 745 88 HOH HOH . 
E 3 HOH A 46 746 48 HOH HOH . 
E 3 HOH A 47 747 2 HOH HOH . 
E 3 HOH A 48 748 147 HOH HOH . 
E 3 HOH A 49 749 16 HOH HOH . 
E 3 HOH A 50 750 156 HOH HOH . 
E 3 HOH A 51 751 89 HOH HOH . 
E 3 HOH A 52 752 85 HOH HOH . 
E 3 HOH A 53 753 10 HOH HOH . 
E 3 HOH A 54 754 38 HOH HOH . 
E 3 HOH A 55 755 4 HOH HOH . 
E 3 HOH A 56 756 77 HOH HOH . 
E 3 HOH A 57 757 25 HOH HOH . 
E 3 HOH A 58 758 9 HOH HOH . 
E 3 HOH A 59 759 21 HOH HOH . 
E 3 HOH A 60 760 146 HOH HOH . 
F 3 HOH B 1 701 34 HOH HOH . 
F 3 HOH B 2 702 32 HOH HOH . 
F 3 HOH B 3 703 21 HOH HOH . 
F 3 HOH B 4 704 1 HOH HOH . 
F 3 HOH B 5 705 111 HOH HOH . 
F 3 HOH B 6 706 142 HOH HOH . 
F 3 HOH B 7 707 69 HOH HOH . 
F 3 HOH B 8 708 3 HOH HOH . 
F 3 HOH B 9 709 135 HOH HOH . 
F 3 HOH B 10 710 96 HOH HOH . 
F 3 HOH B 11 711 59 HOH HOH . 
F 3 HOH B 12 712 5 HOH HOH . 
F 3 HOH B 13 713 33 HOH HOH . 
F 3 HOH B 14 714 82 HOH HOH . 
F 3 HOH B 15 715 72 HOH HOH . 
F 3 HOH B 16 716 66 HOH HOH . 
F 3 HOH B 17 717 97 HOH HOH . 
F 3 HOH B 18 718 129 HOH HOH . 
F 3 HOH B 19 719 28 HOH HOH . 
F 3 HOH B 20 720 67 HOH HOH . 
F 3 HOH B 21 721 34 HOH HOH . 
F 3 HOH B 22 722 113 HOH HOH . 
F 3 HOH B 23 723 101 HOH HOH . 
F 3 HOH B 24 724 83 HOH HOH . 
F 3 HOH B 25 725 52 HOH HOH . 
F 3 HOH B 26 726 27 HOH HOH . 
F 3 HOH B 27 727 13 HOH HOH . 
F 3 HOH B 28 728 143 HOH HOH . 
F 3 HOH B 29 729 25 HOH HOH . 
F 3 HOH B 30 730 97 HOH HOH . 
F 3 HOH B 31 731 107 HOH HOH . 
F 3 HOH B 32 732 3 HOH HOH . 
F 3 HOH B 33 733 8 HOH HOH . 
F 3 HOH B 34 734 6 HOH HOH . 
F 3 HOH B 35 735 70 HOH HOH . 
F 3 HOH B 36 736 8 HOH HOH . 
F 3 HOH B 37 737 26 HOH HOH . 
F 3 HOH B 38 738 125 HOH HOH . 
F 3 HOH B 39 739 33 HOH HOH . 
F 3 HOH B 40 740 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 563 . . . D 2 -1.893 -71.472 -29.312 1 25.7 ? C4 563 601 B 1 
HETATM 2 C C5 563 . . . D 2 -1.94 -70.297 -30.077 1 24.69 ? C5 563 601 B 1 
HETATM 3 C C6 563 . . . D 2 -3.154 -69.844 -30.63 1 25.92 ? C6 563 601 B 1 
HETATM 4 N N1 563 . . . D 2 -4.271 -70.571 -30.373 1 27.31 ? N1 563 601 B 1 
HETATM 5 N N3 563 . . . D 2 -3.046 -72.123 -29.121 1 27.55 ? N3 563 601 B 1 
HETATM 6 C CAN 563 . . . D 2 -0.843 -72.89 -27.555 1 26.87 ? CAN 563 601 B 1 
HETATM 7 C CAL 563 . . . D 2 0.343 -73.616 -27.412 1 28.26 ? CAL 563 601 B 1 
HETATM 8 N NBE 563 . . . D 2 1.525 -72.701 -27.376 1 29.43 ? NBE 563 601 B 1 
HETATM 9 C CAC 563 . . . D 2 2.774 -73.395 -26.938 1 29.43 ? CAC 563 601 B 1 
HETATM 10 C CAM 563 . . . D 2 1.801 -72.216 -28.706 1 28.73 ? CAM 563 601 B 1 
HETATM 11 C CAO 563 . . . D 2 0.559 -71.524 -29.258 1 28.11 ? CAO 563 601 B 1 
HETATM 12 N NBF 563 . . . D 2 -0.764 -71.976 -28.746 1 26.6 ? NBF 563 601 B 1 
HETATM 13 N NAT 563 . . . D 2 -3.118 -68.686 -31.373 1 25.27 ? NAT 563 601 B 1 
HETATM 14 C CBA 563 . . . D 2 -4.169 -68.114 -32.022 1 24.07 ? CBA 563 601 B 1 
HETATM 15 C CAJ 563 . . . D 2 -5.35 -68.637 -32.363 1 23.6 ? CAJ 563 601 B 1 
HETATM 16 C CAX 563 . . . D 2 -5.996 -67.655 -32.997 1 23.26 ? CAX 563 601 B 1 
HETATM 17 C CAB 563 . . . D 2 -7.427 -67.752 -33.572 1 22.9 ? CAB 563 601 B 1 
HETATM 18 N NAU 563 . . . D 2 -5.228 -66.574 -33.042 1 22.78 ? NAU 563 601 B 1 
HETATM 19 N NAP 563 . . . D 2 -4.158 -66.851 -32.483 1 23.28 ? NAP 563 601 B 1 
HETATM 20 C C2 563 . . . D 2 -4.21 -71.69 -29.621 1 30.15 ? C2 563 601 B 1 
HETATM 21 O OAV 563 . . . D 2 -5.264 -72.501 -29.319 1 36.8 ? OAV 563 601 B 1 
HETATM 22 C CAZ 563 . . . D 2 -6.619 -72.33 -29.514 1 41.19 ? CAZ 563 601 B 1 
HETATM 23 C CAI 563 . . . D 2 -7.364 -71.174 -29.215 1 41.64 ? CAI 563 601 B 1 
HETATM 24 C CAG 563 . . . D 2 -8.758 -71.17 -29.425 1 44.54 ? CAG 563 601 B 1 
HETATM 25 C CAH 563 . . . D 2 -7.293 -73.455 -29.984 1 43.27 ? CAH 563 601 B 1 
HETATM 26 C CAF 563 . . . D 2 -8.671 -73.449 -30.199 1 46.57 ? CAF 563 601 B 1 
HETATM 27 C CAY 563 . . . D 2 -9.426 -72.304 -29.947 1 49.1 ? CAY 563 601 B 1 
HETATM 28 N NAS 563 . . . D 2 -10.765 -72.43 -30.157 1 54.04 ? NAS 563 601 B 1 
HETATM 29 C CAW 563 . . . D 2 -11.581 -71.606 -30.885 1 58.54 ? CAW 563 601 B 1 
HETATM 30 O OAD 563 . . . D 2 -12.788 -71.842 -30.975 1 63.03 ? OAD 563 601 B 1 
HETATM 31 C CAE 563 . . . D 2 -11.028 -70.35 -31.603 1 59.57 ? CAE 563 601 B 1 
HETATM 32 C CAA 563 . . . D 2 -11.978 -69.437 -32.401 1 57.99 ? CAA 563 601 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#