data_5D11 # _model_server_result.job_id AlK57TtHgCETMFW5BSthsQ _model_server_result.datetime_utc '2024-11-28 02:05:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d11 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5D11 # _exptl.entry_id 5D11 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.65 _cell.angle_beta 89.55 _cell.angle_gamma 90.29 _cell.entry_id 5D11 _cell.length_a 42.12 _cell.length_b 63.43 _cell.length_c 75.35 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D11 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 98 A CYS 345 1_555 D CAA 56G . A 56G 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? covale ? covale2 B SG CYS 98 B CYS 345 1_555 F CAA 56G . B 56G 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 190 n n C1 C2 GOL sing 191 n n C1 H11 GOL sing 192 n n C1 H12 GOL sing 193 n n O1 HO1 GOL sing 194 n n C2 O2 GOL sing 195 n n C2 C3 GOL sing 196 n n C2 H2 GOL sing 197 n n O2 HO2 GOL sing 198 n n C3 O3 GOL sing 199 n n C3 H31 GOL sing 200 n n C3 H32 GOL sing 201 n n O3 HO3 GOL sing 202 n n # _atom_sites.entry_id 5D11 _atom_sites.fract_transf_matrix[1][1] 0.023742 _atom_sites.fract_transf_matrix[1][2] 0.000118 _atom_sites.fract_transf_matrix[1][3] -0.000213 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015766 _atom_sites.fract_transf_matrix[2][3] -0.003164 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 1 GOL GOL . D 3 56G A 1 602 2 56G DRG . E 2 GOL B 1 601 2 GOL GOL . F 3 56G B 1 602 3 56G DRG . G 4 HOH A 1 701 91 HOH HOH . G 4 HOH A 2 702 93 HOH HOH . G 4 HOH A 3 703 35 HOH HOH . G 4 HOH A 4 704 85 HOH HOH . G 4 HOH A 5 705 43 HOH HOH . G 4 HOH A 6 706 38 HOH HOH . G 4 HOH A 7 707 66 HOH HOH . G 4 HOH A 8 708 71 HOH HOH . G 4 HOH A 9 709 83 HOH HOH . G 4 HOH A 10 710 3 HOH HOH . G 4 HOH A 11 711 10 HOH HOH . G 4 HOH A 12 712 21 HOH HOH . G 4 HOH A 13 713 15 HOH HOH . G 4 HOH A 14 714 6 HOH HOH . G 4 HOH A 15 715 97 HOH HOH . G 4 HOH A 16 716 5 HOH HOH . G 4 HOH A 17 717 25 HOH HOH . G 4 HOH A 18 718 73 HOH HOH . G 4 HOH A 19 719 82 HOH HOH . G 4 HOH A 20 720 40 HOH HOH . G 4 HOH A 21 721 67 HOH HOH . G 4 HOH A 22 722 95 HOH HOH . G 4 HOH A 23 723 77 HOH HOH . G 4 HOH A 24 724 79 HOH HOH . G 4 HOH A 25 725 22 HOH HOH . G 4 HOH A 26 726 23 HOH HOH . G 4 HOH A 27 727 9 HOH HOH . G 4 HOH A 28 728 2 HOH HOH . G 4 HOH A 29 729 42 HOH HOH . G 4 HOH A 30 730 55 HOH HOH . G 4 HOH A 31 731 12 HOH HOH . G 4 HOH A 32 732 99 HOH HOH . G 4 HOH A 33 733 47 HOH HOH . G 4 HOH A 34 734 37 HOH HOH . G 4 HOH A 35 735 1 HOH HOH . G 4 HOH A 36 736 54 HOH HOH . G 4 HOH A 37 737 94 HOH HOH . G 4 HOH A 38 738 29 HOH HOH . G 4 HOH A 39 739 41 HOH HOH . G 4 HOH A 40 740 33 HOH HOH . G 4 HOH A 41 741 80 HOH HOH . G 4 HOH A 42 742 11 HOH HOH . G 4 HOH A 43 743 19 HOH HOH . G 4 HOH A 44 744 76 HOH HOH . G 4 HOH A 45 745 96 HOH HOH . G 4 HOH A 46 746 74 HOH HOH . G 4 HOH A 47 747 45 HOH HOH . G 4 HOH A 48 748 75 HOH HOH . G 4 HOH A 49 749 30 HOH HOH . G 4 HOH A 50 750 103 HOH HOH . G 4 HOH A 51 751 86 HOH HOH . G 4 HOH A 52 752 98 HOH HOH . H 4 HOH B 1 701 60 HOH HOH . H 4 HOH B 2 702 88 HOH HOH . H 4 HOH B 3 703 48 HOH HOH . H 4 HOH B 4 704 65 HOH HOH . H 4 HOH B 5 705 32 HOH HOH . H 4 HOH B 6 706 14 HOH HOH . H 4 HOH B 7 707 70 HOH HOH . H 4 HOH B 8 708 84 HOH HOH . H 4 HOH B 9 709 78 HOH HOH . H 4 HOH B 10 710 61 HOH HOH . H 4 HOH B 11 711 52 HOH HOH . H 4 HOH B 12 712 90 HOH HOH . H 4 HOH B 13 713 34 HOH HOH . H 4 HOH B 14 714 62 HOH HOH . H 4 HOH B 15 715 57 HOH HOH . H 4 HOH B 16 716 28 HOH HOH . H 4 HOH B 17 717 27 HOH HOH . H 4 HOH B 18 718 69 HOH HOH . H 4 HOH B 19 719 59 HOH HOH . H 4 HOH B 20 720 13 HOH HOH . H 4 HOH B 21 721 92 HOH HOH . H 4 HOH B 22 722 8 HOH HOH . H 4 HOH B 23 723 44 HOH HOH . H 4 HOH B 24 724 64 HOH HOH . H 4 HOH B 25 725 4 HOH HOH . H 4 HOH B 26 726 24 HOH HOH . H 4 HOH B 27 727 36 HOH HOH . H 4 HOH B 28 728 39 HOH HOH . H 4 HOH B 29 729 89 HOH HOH . H 4 HOH B 30 730 87 HOH HOH . H 4 HOH B 31 731 49 HOH HOH . H 4 HOH B 32 732 17 HOH HOH . H 4 HOH B 33 733 81 HOH HOH . H 4 HOH B 34 734 46 HOH HOH . H 4 HOH B 35 735 26 HOH HOH . H 4 HOH B 36 736 101 HOH HOH . H 4 HOH B 37 737 31 HOH HOH . H 4 HOH B 38 738 72 HOH HOH . H 4 HOH B 39 739 68 HOH HOH . H 4 HOH B 40 740 7 HOH HOH . H 4 HOH B 41 741 56 HOH HOH . H 4 HOH B 42 742 50 HOH HOH . H 4 HOH B 43 743 100 HOH HOH . H 4 HOH B 44 744 102 HOH HOH . H 4 HOH B 45 745 51 HOH HOH . H 4 HOH B 46 746 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -19.861 -21.984 -9.845 1 50.55 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . C 2 -18.719 -21.106 -9.883 1 59.29 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . C 2 -19.388 -23.369 -9.46 1 53.13 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . C 2 -20.561 -24.162 -9.295 1 51.97 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . C 2 -18.515 -23.31 -8.184 1 56.66 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . C 2 -18.766 -24.399 -7.283 1 52.07 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 463 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #