data_5D11
#
_model_server_result.job_id            VaFBnbCJUgX8NBGz4QZwTQ 
_model_server_result.datetime_utc      '2024-11-24 08:40:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    5D11 
#
_exptl.entry_id    5D11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.65 
_cell.angle_beta          89.55 
_cell.angle_gamma         90.29 
_cell.entry_id            5D11 
_cell.length_a            42.12 
_cell.length_b            63.43 
_cell.length_c            75.35 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 98 A CYS 345 1_555 D CAA 56G . A 56G 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? 
covale ? covale2 B SG CYS 98 B CYS 345 1_555 F CAA 56G . B 56G 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.649 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 190 n n 
C1 C2 GOL sing 191 n n 
C1 H11 GOL sing 192 n n 
C1 H12 GOL sing 193 n n 
O1 HO1 GOL sing 194 n n 
C2 O2 GOL sing 195 n n 
C2 C3 GOL sing 196 n n 
C2 H2 GOL sing 197 n n 
O2 HO2 GOL sing 198 n n 
C3 O3 GOL sing 199 n n 
C3 H31 GOL sing 200 n n 
C3 H32 GOL sing 201 n n 
O3 HO3 GOL sing 202 n n 
#
_atom_sites.entry_id                     5D11 
_atom_sites.fract_transf_matrix[1][1]    0.023742 
_atom_sites.fract_transf_matrix[1][2]    0.000118 
_atom_sites.fract_transf_matrix[1][3]    -0.000213 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015766 
_atom_sites.fract_transf_matrix[2][3]    -0.003164 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 601 1 GOL GOL . 
D 3 56G A 1 602 2 56G DRG . 
E 2 GOL B 1 601 2 GOL GOL . 
F 3 56G B 1 602 3 56G DRG . 
G 4 HOH A 1 701 91 HOH HOH . 
G 4 HOH A 2 702 93 HOH HOH . 
G 4 HOH A 3 703 35 HOH HOH . 
G 4 HOH A 4 704 85 HOH HOH . 
G 4 HOH A 5 705 43 HOH HOH . 
G 4 HOH A 6 706 38 HOH HOH . 
G 4 HOH A 7 707 66 HOH HOH . 
G 4 HOH A 8 708 71 HOH HOH . 
G 4 HOH A 9 709 83 HOH HOH . 
G 4 HOH A 10 710 3 HOH HOH . 
G 4 HOH A 11 711 10 HOH HOH . 
G 4 HOH A 12 712 21 HOH HOH . 
G 4 HOH A 13 713 15 HOH HOH . 
G 4 HOH A 14 714 6 HOH HOH . 
G 4 HOH A 15 715 97 HOH HOH . 
G 4 HOH A 16 716 5 HOH HOH . 
G 4 HOH A 17 717 25 HOH HOH . 
G 4 HOH A 18 718 73 HOH HOH . 
G 4 HOH A 19 719 82 HOH HOH . 
G 4 HOH A 20 720 40 HOH HOH . 
G 4 HOH A 21 721 67 HOH HOH . 
G 4 HOH A 22 722 95 HOH HOH . 
G 4 HOH A 23 723 77 HOH HOH . 
G 4 HOH A 24 724 79 HOH HOH . 
G 4 HOH A 25 725 22 HOH HOH . 
G 4 HOH A 26 726 23 HOH HOH . 
G 4 HOH A 27 727 9 HOH HOH . 
G 4 HOH A 28 728 2 HOH HOH . 
G 4 HOH A 29 729 42 HOH HOH . 
G 4 HOH A 30 730 55 HOH HOH . 
G 4 HOH A 31 731 12 HOH HOH . 
G 4 HOH A 32 732 99 HOH HOH . 
G 4 HOH A 33 733 47 HOH HOH . 
G 4 HOH A 34 734 37 HOH HOH . 
G 4 HOH A 35 735 1 HOH HOH . 
G 4 HOH A 36 736 54 HOH HOH . 
G 4 HOH A 37 737 94 HOH HOH . 
G 4 HOH A 38 738 29 HOH HOH . 
G 4 HOH A 39 739 41 HOH HOH . 
G 4 HOH A 40 740 33 HOH HOH . 
G 4 HOH A 41 741 80 HOH HOH . 
G 4 HOH A 42 742 11 HOH HOH . 
G 4 HOH A 43 743 19 HOH HOH . 
G 4 HOH A 44 744 76 HOH HOH . 
G 4 HOH A 45 745 96 HOH HOH . 
G 4 HOH A 46 746 74 HOH HOH . 
G 4 HOH A 47 747 45 HOH HOH . 
G 4 HOH A 48 748 75 HOH HOH . 
G 4 HOH A 49 749 30 HOH HOH . 
G 4 HOH A 50 750 103 HOH HOH . 
G 4 HOH A 51 751 86 HOH HOH . 
G 4 HOH A 52 752 98 HOH HOH . 
H 4 HOH B 1 701 60 HOH HOH . 
H 4 HOH B 2 702 88 HOH HOH . 
H 4 HOH B 3 703 48 HOH HOH . 
H 4 HOH B 4 704 65 HOH HOH . 
H 4 HOH B 5 705 32 HOH HOH . 
H 4 HOH B 6 706 14 HOH HOH . 
H 4 HOH B 7 707 70 HOH HOH . 
H 4 HOH B 8 708 84 HOH HOH . 
H 4 HOH B 9 709 78 HOH HOH . 
H 4 HOH B 10 710 61 HOH HOH . 
H 4 HOH B 11 711 52 HOH HOH . 
H 4 HOH B 12 712 90 HOH HOH . 
H 4 HOH B 13 713 34 HOH HOH . 
H 4 HOH B 14 714 62 HOH HOH . 
H 4 HOH B 15 715 57 HOH HOH . 
H 4 HOH B 16 716 28 HOH HOH . 
H 4 HOH B 17 717 27 HOH HOH . 
H 4 HOH B 18 718 69 HOH HOH . 
H 4 HOH B 19 719 59 HOH HOH . 
H 4 HOH B 20 720 13 HOH HOH . 
H 4 HOH B 21 721 92 HOH HOH . 
H 4 HOH B 22 722 8 HOH HOH . 
H 4 HOH B 23 723 44 HOH HOH . 
H 4 HOH B 24 724 64 HOH HOH . 
H 4 HOH B 25 725 4 HOH HOH . 
H 4 HOH B 26 726 24 HOH HOH . 
H 4 HOH B 27 727 36 HOH HOH . 
H 4 HOH B 28 728 39 HOH HOH . 
H 4 HOH B 29 729 89 HOH HOH . 
H 4 HOH B 30 730 87 HOH HOH . 
H 4 HOH B 31 731 49 HOH HOH . 
H 4 HOH B 32 732 17 HOH HOH . 
H 4 HOH B 33 733 81 HOH HOH . 
H 4 HOH B 34 734 46 HOH HOH . 
H 4 HOH B 35 735 26 HOH HOH . 
H 4 HOH B 36 736 101 HOH HOH . 
H 4 HOH B 37 737 31 HOH HOH . 
H 4 HOH B 38 738 72 HOH HOH . 
H 4 HOH B 39 739 68 HOH HOH . 
H 4 HOH B 40 740 7 HOH HOH . 
H 4 HOH B 41 741 56 HOH HOH . 
H 4 HOH B 42 742 50 HOH HOH . 
H 4 HOH B 43 743 100 HOH HOH . 
H 4 HOH B 44 744 102 HOH HOH . 
H 4 HOH B 45 745 51 HOH HOH . 
H 4 HOH B 46 746 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 4.95 -54.151 -13.228 1 53.47 ? C1 GOL 601 B 1 
HETATM 2 O O1 GOL . . . E 2 3.982 -53.564 -14.099 1 50.68 ? O1 GOL 601 B 1 
HETATM 3 C C2 GOL . . . E 2 5.797 -55.091 -14.071 1 59.23 ? C2 GOL 601 B 1 
HETATM 4 O O2 GOL . . . E 2 6.759 -55.71 -13.21 1 59.32 ? O2 GOL 601 B 1 
HETATM 5 C C3 GOL . . . E 2 4.909 -56.166 -14.716 1 60.07 ? C3 GOL 601 B 1 
HETATM 6 O O3 GOL . . . E 2 4.94 -56.401 -16.138 1 53.25 ? O3 GOL 601 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#