data_5D16 # _model_server_result.job_id MwEqMJ8Vo38tlGDVYgo4Ug _model_server_result.datetime_utc '2024-11-25 20:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d16 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5D16 # _exptl.entry_id 5D16 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.28 _cell.angle_gamma 90 _cell.entry_id 5D16 _cell.length_a 47.03 _cell.length_b 71.25 _cell.length_c 50.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D16 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5D16 _atom_sites.fract_transf_matrix[1][1] 0.021263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002717 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 601 1 GOL GOL . D 3 HOH A 1 701 130 HOH HOH . D 3 HOH A 2 702 165 HOH HOH . D 3 HOH A 3 703 163 HOH HOH . D 3 HOH A 4 704 120 HOH HOH . D 3 HOH A 5 705 99 HOH HOH . D 3 HOH A 6 706 189 HOH HOH . D 3 HOH A 7 707 54 HOH HOH . D 3 HOH A 8 708 41 HOH HOH . D 3 HOH A 9 709 141 HOH HOH . D 3 HOH A 10 710 67 HOH HOH . D 3 HOH A 11 711 14 HOH HOH . D 3 HOH A 12 712 15 HOH HOH . D 3 HOH A 13 713 50 HOH HOH . D 3 HOH A 14 714 136 HOH HOH . D 3 HOH A 15 715 34 HOH HOH . D 3 HOH A 16 716 23 HOH HOH . D 3 HOH A 17 717 101 HOH HOH . D 3 HOH A 18 718 127 HOH HOH . D 3 HOH A 19 719 177 HOH HOH . D 3 HOH A 20 720 5 HOH HOH . D 3 HOH A 21 721 71 HOH HOH . D 3 HOH A 22 722 47 HOH HOH . D 3 HOH A 23 723 174 HOH HOH . D 3 HOH A 24 724 51 HOH HOH . D 3 HOH A 25 725 8 HOH HOH . D 3 HOH A 26 726 87 HOH HOH . D 3 HOH A 27 727 132 HOH HOH . D 3 HOH A 28 728 105 HOH HOH . D 3 HOH A 29 729 36 HOH HOH . D 3 HOH A 30 730 27 HOH HOH . D 3 HOH A 31 731 6 HOH HOH . D 3 HOH A 32 732 167 HOH HOH . D 3 HOH A 33 733 28 HOH HOH . D 3 HOH A 34 734 199 HOH HOH . D 3 HOH A 35 735 74 HOH HOH . D 3 HOH A 36 736 153 HOH HOH . D 3 HOH A 37 737 70 HOH HOH . D 3 HOH A 38 738 3 HOH HOH . D 3 HOH A 39 739 156 HOH HOH . D 3 HOH A 40 740 4 HOH HOH . D 3 HOH A 41 741 79 HOH HOH . D 3 HOH A 42 742 192 HOH HOH . D 3 HOH A 43 743 1 HOH HOH . D 3 HOH A 44 744 162 HOH HOH . D 3 HOH A 45 745 2 HOH HOH . D 3 HOH A 46 746 166 HOH HOH . D 3 HOH A 47 747 144 HOH HOH . D 3 HOH A 48 748 157 HOH HOH . D 3 HOH A 49 749 7 HOH HOH . D 3 HOH A 50 750 201 HOH HOH . D 3 HOH A 51 751 158 HOH HOH . D 3 HOH A 52 752 31 HOH HOH . D 3 HOH A 53 753 83 HOH HOH . D 3 HOH A 54 754 25 HOH HOH . D 3 HOH A 55 755 85 HOH HOH . D 3 HOH A 56 756 45 HOH HOH . D 3 HOH A 57 757 175 HOH HOH . D 3 HOH A 58 758 58 HOH HOH . D 3 HOH A 59 759 84 HOH HOH . D 3 HOH A 60 760 149 HOH HOH . D 3 HOH A 61 761 191 HOH HOH . D 3 HOH A 62 762 65 HOH HOH . D 3 HOH A 63 763 182 HOH HOH . D 3 HOH A 64 764 129 HOH HOH . D 3 HOH A 65 765 69 HOH HOH . D 3 HOH A 66 766 196 HOH HOH . D 3 HOH A 67 767 21 HOH HOH . D 3 HOH A 68 768 143 HOH HOH . D 3 HOH A 69 769 78 HOH HOH . D 3 HOH A 70 770 49 HOH HOH . D 3 HOH A 71 771 114 HOH HOH . D 3 HOH A 72 772 200 HOH HOH . D 3 HOH A 73 773 12 HOH HOH . D 3 HOH A 74 774 86 HOH HOH . D 3 HOH A 75 775 197 HOH HOH . D 3 HOH A 76 776 55 HOH HOH . D 3 HOH A 77 777 126 HOH HOH . D 3 HOH A 78 778 61 HOH HOH . D 3 HOH A 79 779 190 HOH HOH . D 3 HOH A 80 780 119 HOH HOH . D 3 HOH A 81 781 125 HOH HOH . D 3 HOH A 82 782 57 HOH HOH . D 3 HOH A 83 783 52 HOH HOH . D 3 HOH A 84 784 170 HOH HOH . D 3 HOH A 85 785 9 HOH HOH . D 3 HOH A 86 786 13 HOH HOH . D 3 HOH A 87 787 53 HOH HOH . D 3 HOH A 88 788 145 HOH HOH . D 3 HOH A 89 789 131 HOH HOH . D 3 HOH A 90 790 44 HOH HOH . D 3 HOH A 91 791 161 HOH HOH . D 3 HOH A 92 792 169 HOH HOH . D 3 HOH A 93 793 109 HOH HOH . D 3 HOH A 94 794 42 HOH HOH . D 3 HOH A 95 795 90 HOH HOH . D 3 HOH A 96 796 96 HOH HOH . D 3 HOH A 97 797 73 HOH HOH . D 3 HOH A 98 798 172 HOH HOH . D 3 HOH A 99 799 134 HOH HOH . D 3 HOH A 100 800 72 HOH HOH . D 3 HOH A 101 801 135 HOH HOH . D 3 HOH A 102 802 186 HOH HOH . D 3 HOH A 103 803 180 HOH HOH . D 3 HOH A 104 804 147 HOH HOH . D 3 HOH A 105 805 113 HOH HOH . D 3 HOH A 106 806 81 HOH HOH . D 3 HOH A 107 807 139 HOH HOH . D 3 HOH A 108 808 202 HOH HOH . D 3 HOH A 109 809 100 HOH HOH . D 3 HOH A 110 810 193 HOH HOH . D 3 HOH A 111 811 148 HOH HOH . D 3 HOH A 112 812 151 HOH HOH . D 3 HOH A 113 813 150 HOH HOH . D 3 HOH A 114 814 110 HOH HOH . D 3 HOH A 115 815 198 HOH HOH . D 3 HOH A 116 816 63 HOH HOH . D 3 HOH A 117 817 111 HOH HOH . D 3 HOH A 118 818 178 HOH HOH . D 3 HOH A 119 819 188 HOH HOH . D 3 HOH A 120 820 39 HOH HOH . D 3 HOH A 121 821 80 HOH HOH . D 3 HOH A 122 822 185 HOH HOH . E 3 HOH B 1 601 184 HOH HOH . E 3 HOH B 2 602 194 HOH HOH . E 3 HOH B 3 603 91 HOH HOH . E 3 HOH B 4 604 19 HOH HOH . E 3 HOH B 5 605 59 HOH HOH . E 3 HOH B 6 606 56 HOH HOH . E 3 HOH B 7 607 117 HOH HOH . E 3 HOH B 8 608 11 HOH HOH . E 3 HOH B 9 609 95 HOH HOH . E 3 HOH B 10 610 40 HOH HOH . E 3 HOH B 11 611 35 HOH HOH . E 3 HOH B 12 612 17 HOH HOH . E 3 HOH B 13 613 89 HOH HOH . E 3 HOH B 14 614 29 HOH HOH . E 3 HOH B 15 615 93 HOH HOH . E 3 HOH B 16 616 18 HOH HOH . E 3 HOH B 17 617 82 HOH HOH . E 3 HOH B 18 618 115 HOH HOH . E 3 HOH B 19 619 128 HOH HOH . E 3 HOH B 20 620 68 HOH HOH . E 3 HOH B 21 621 76 HOH HOH . E 3 HOH B 22 622 107 HOH HOH . E 3 HOH B 23 623 97 HOH HOH . E 3 HOH B 24 624 94 HOH HOH . E 3 HOH B 25 625 92 HOH HOH . E 3 HOH B 26 626 123 HOH HOH . E 3 HOH B 27 627 106 HOH HOH . E 3 HOH B 28 628 30 HOH HOH . E 3 HOH B 29 629 152 HOH HOH . E 3 HOH B 30 630 43 HOH HOH . E 3 HOH B 31 631 16 HOH HOH . E 3 HOH B 32 632 10 HOH HOH . E 3 HOH B 33 633 140 HOH HOH . E 3 HOH B 34 634 48 HOH HOH . E 3 HOH B 35 635 75 HOH HOH . E 3 HOH B 36 636 66 HOH HOH . E 3 HOH B 37 637 46 HOH HOH . E 3 HOH B 38 638 33 HOH HOH . E 3 HOH B 39 639 122 HOH HOH . E 3 HOH B 40 640 26 HOH HOH . E 3 HOH B 41 641 104 HOH HOH . E 3 HOH B 42 642 173 HOH HOH . E 3 HOH B 43 643 77 HOH HOH . E 3 HOH B 44 644 108 HOH HOH . E 3 HOH B 45 645 118 HOH HOH . E 3 HOH B 46 646 154 HOH HOH . E 3 HOH B 47 647 20 HOH HOH . E 3 HOH B 48 648 187 HOH HOH . E 3 HOH B 49 649 121 HOH HOH . E 3 HOH B 50 650 176 HOH HOH . E 3 HOH B 51 651 103 HOH HOH . E 3 HOH B 52 652 137 HOH HOH . E 3 HOH B 53 653 38 HOH HOH . E 3 HOH B 54 654 155 HOH HOH . E 3 HOH B 55 655 88 HOH HOH . E 3 HOH B 56 656 179 HOH HOH . E 3 HOH B 57 657 112 HOH HOH . E 3 HOH B 58 658 60 HOH HOH . E 3 HOH B 59 659 124 HOH HOH . E 3 HOH B 60 660 37 HOH HOH . E 3 HOH B 61 661 62 HOH HOH . E 3 HOH B 62 662 146 HOH HOH . E 3 HOH B 63 663 32 HOH HOH . E 3 HOH B 64 664 24 HOH HOH . E 3 HOH B 65 665 195 HOH HOH . E 3 HOH B 66 666 159 HOH HOH . E 3 HOH B 67 667 164 HOH HOH . E 3 HOH B 68 668 22 HOH HOH . E 3 HOH B 69 669 98 HOH HOH . E 3 HOH B 70 670 160 HOH HOH . E 3 HOH B 71 671 138 HOH HOH . E 3 HOH B 72 672 171 HOH HOH . E 3 HOH B 73 673 133 HOH HOH . E 3 HOH B 74 674 102 HOH HOH . E 3 HOH B 75 675 142 HOH HOH . E 3 HOH B 76 676 116 HOH HOH . E 3 HOH B 77 677 64 HOH HOH . E 3 HOH B 78 678 181 HOH HOH . E 3 HOH B 79 679 183 HOH HOH . E 3 HOH B 80 680 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -16.508 1.729 -8.249 1 52.43 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . C 2 -17.34 2.863 -8.365 1 47.19 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . C 2 -15.045 2.155 -8.333 1 54.78 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . C 2 -14.526 2.296 -7.027 1 58.42 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . C 2 -14.236 1.122 -9.123 1 47.48 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . C 2 -13.345 1.752 -10.035 1 37.59 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #