data_5D1B # _model_server_result.job_id jOpHxYjypM9xf9t5OhheBg _model_server_result.datetime_utc '2024-11-23 22:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":404}' # _entry.id 5D1B # _exptl.entry_id 5D1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.368 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRICHOSTATIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.77 _cell.angle_gamma 90 _cell.entry_id 5D1B _cell.length_a 52.197 _cell.length_b 83.031 _cell.length_c 98.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc2 A OD1 ASP 176 A ASP 176 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc3 A OD2 ASP 178 A ASP 178 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A O ASP 178 A ASP 178 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc5 A ND1 HIS 180 A HIS 180 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc6 A O HIS 180 A HIS 180 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc7 A O PHE 189 A PHE 189 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc8 A O THR 192 A THR 192 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc9 A O VAL 195 A VAL 195 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc10 A OG SER 199 A SER 199 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc11 A O LEU 200 A LEU 200 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc12 A O TYR 225 A TYR 225 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc14 C ZN ZN . A ZN 401 1_555 F O2 TSN . A TSN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc15 C ZN ZN . A ZN 401 1_555 F O1 TSN . A TSN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc16 B O ASP 176 B ASP 176 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc17 B OD1 ASP 176 B ASP 176 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc18 B OD2 ASP 178 B ASP 178 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc19 B O ASP 178 B ASP 178 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc20 B ND1 HIS 180 B HIS 180 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc21 B O HIS 180 B HIS 180 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc22 B O PHE 189 B PHE 189 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc23 B O THR 192 B THR 192 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.275 ? metalc ? metalc24 B O VAL 195 B VAL 195 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc25 B OG SER 199 B SER 199 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc26 B O LEU 200 B LEU 200 1_555 H K K . B K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc27 B O TYR 225 B TYR 225 1_555 I K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc28 B OD2 ASP 267 B ASP 267 1_555 G ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc29 G ZN ZN . B ZN 401 1_555 J O1 TSN . B TSN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc30 G ZN ZN . B ZN 401 1_555 J O2 TSN . B TSN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc31 I K K . B K 403 1_555 L O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc32 I K K . B K 403 1_555 L O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? # _chem_comp.formula 'C17 H22 N2 O3' _chem_comp.formula_weight 302.368 _chem_comp.id TSN _chem_comp.mon_nstd_flag . _chem_comp.name 'TRICHOSTATIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-[4-(DIMETHYLAMINO)PHENYL]-N-HYDROXY-4,6-DIMETHYL-7-OXO-2,4-HEPTADIENAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 TSN sing 334 n n O1 HO1 TSN sing 335 n n O2 C13 TSN doub 336 n n O3 C7 TSN doub 337 n n N1 C13 TSN sing 338 n n N1 HN1 TSN sing 339 n n N2 C4 TSN sing 340 n n N2 C17 TSN sing 341 n n N2 C16 TSN sing 342 n n C1 C2 TSN doub 343 n y C1 C6 TSN sing 344 n y C1 C7 TSN sing 345 n n C2 C3 TSN sing 346 n y C2 H21 TSN sing 347 n n C3 C4 TSN doub 348 n y C3 H31 TSN sing 349 n n C4 C5 TSN sing 350 n y C5 C6 TSN doub 351 n y C5 H51 TSN sing 352 n n C6 H61 TSN sing 353 n n C7 C8 TSN sing 354 n n C8 C9 TSN sing 355 n n C8 C14 TSN sing 356 n n C8 H8 TSN sing 357 n n C9 C10 TSN doub 358 e n C9 H9 TSN sing 359 n n C10 C11 TSN sing 360 n n C10 C15 TSN sing 361 n n C11 C12 TSN doub 362 e n C11 H111 TSN sing 363 n n C12 C13 TSN sing 364 n n C12 H121 TSN sing 365 n n C14 H141 TSN sing 366 n n C14 H142 TSN sing 367 n n C14 H143 TSN sing 368 n n C15 H151 TSN sing 369 n n C15 H152 TSN sing 370 n n C15 H153 TSN sing 371 n n C17 H171 TSN sing 372 n n C17 H172 TSN sing 373 n n C17 H173 TSN sing 374 n n C16 H161 TSN sing 375 n n C16 H162 TSN sing 376 n n C16 H163 TSN sing 377 n n # _atom_sites.entry_id 5D1B _atom_sites.fract_transf_matrix[1][1] 0.019158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 401 401 ZN ZN . D 3 K A 1 402 411 K K . E 3 K A 1 403 412 K K . F 4 TSN A 1 404 500 TSN TSN . G 2 ZN B 1 401 401 ZN ZN . H 3 K B 1 402 411 K K . I 3 K B 1 403 412 K K . J 4 TSN B 1 404 500 TSN TSN . K 5 HOH A 1 501 6 HOH HOH . K 5 HOH A 2 502 3 HOH HOH . K 5 HOH A 3 503 9 HOH HOH . K 5 HOH A 4 504 10 HOH HOH . K 5 HOH A 5 505 8 HOH HOH . L 5 HOH B 1 501 1 HOH HOH . L 5 HOH B 2 502 2 HOH HOH . L 5 HOH B 3 503 18 HOH HOH . L 5 HOH B 4 504 5 HOH HOH . L 5 HOH B 5 505 11 HOH HOH . L 5 HOH B 6 506 14 HOH HOH . L 5 HOH B 7 507 15 HOH HOH . L 5 HOH B 8 508 12 HOH HOH . L 5 HOH B 9 509 16 HOH HOH . L 5 HOH B 10 510 13 HOH HOH . L 5 HOH B 11 511 4 HOH HOH . L 5 HOH B 12 512 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TSN . . . J 4 3.402 -4.976 -32.268 1 27.38 ? O1 TSN 404 B 1 HETATM 2 O O2 TSN . . . J 4 2.621 -3.293 -30.316 1 36.17 ? O2 TSN 404 B 1 HETATM 3 O O3 TSN . . . J 4 0.15 2.912 -28.32 1 27.97 ? O3 TSN 404 B 1 HETATM 4 N N1 TSN . . . J 4 3.536 -3.589 -32.336 1 28.11 ? N1 TSN 404 B 1 HETATM 5 N N2 TSN . . . J 4 3.233 7.04 -24.688 1 29.52 ? N2 TSN 404 B 1 HETATM 6 C C1 TSN . . . J 4 1.775 4.393 -27.509 1 26.93 ? C1 TSN 404 B 1 HETATM 7 C C2 TSN . . . J 4 1.031 4.663 -26.369 1 27.75 ? C2 TSN 404 B 1 HETATM 8 C C3 TSN . . . J 4 1.52 5.553 -25.421 1 28.09 ? C3 TSN 404 B 1 HETATM 9 C C4 TSN . . . J 4 2.754 6.17 -25.615 1 31.84 ? C4 TSN 404 B 1 HETATM 10 C C5 TSN . . . J 4 3.493 5.892 -26.763 1 29.53 ? C5 TSN 404 B 1 HETATM 11 C C6 TSN . . . J 4 3.004 5.001 -27.712 1 27.21 ? C6 TSN 404 B 1 HETATM 12 C C7 TSN . . . J 4 1.233 3.435 -28.52 1 27.71 ? C7 TSN 404 B 1 HETATM 13 C C8 TSN . . . J 4 2 3.103 -29.764 1 30.61 ? C8 TSN 404 B 1 HETATM 14 C C9 TSN . . . J 4 2.052 1.593 -29.846 1 27.44 ? C9 TSN 404 B 1 HETATM 15 C C10 TSN . . . J 4 2.895 0.876 -30.61 1 27.27 ? C10 TSN 404 B 1 HETATM 16 C C11 TSN . . . J 4 2.777 -0.589 -30.541 1 24.72 ? C11 TSN 404 B 1 HETATM 17 C C12 TSN . . . J 4 3.297 -1.373 -31.471 1 24.73 ? C12 TSN 404 B 1 HETATM 18 C C13 TSN . . . J 4 3.123 -2.829 -31.326 1 28.17 ? C13 TSN 404 B 1 HETATM 19 C C14 TSN . . . J 4 1.243 3.681 -30.953 1 25.95 ? C14 TSN 404 B 1 HETATM 20 C C15 TSN . . . J 4 3.924 1.515 -31.498 1 23.79 ? C15 TSN 404 B 1 HETATM 21 C C17 TSN . . . J 4 2.458 7.319 -23.487 1 27.46 ? C17 TSN 404 B 1 HETATM 22 C C16 TSN . . . J 4 4.526 7.68 -24.884 1 21.2 ? C16 TSN 404 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 427 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 22 #