data_5D1K # _model_server_result.job_id 63dZHb2Hi0T6gCZFdNeOrg _model_server_result.datetime_utc '2025-01-02 23:48:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":304}' # _entry.id 5D1K # _exptl.entry_id 5D1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.09 _cell.angle_gamma 90 _cell.entry_id 5D1K _cell.length_a 105.47 _cell.length_b 45.658 _cell.length_c 67.954 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 10 B CYS 135 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 B SG CYS 13 B CYS 138 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 B SG CYS 28 B CYS 153 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 B ND1 HIS 30 B HIS 155 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 B ND1 HIS 33 B HIS 158 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc6 B SG CYS 36 B CYS 161 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 B SG CYS 73 B CYS 198 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 B SG CYS 76 B CYS 201 1_555 G ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5D1K _atom_sites.fract_transf_matrix[1][1] 0.009481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005061 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 403 EDO EDO . D 4 PEG A 1 202 405 PEG PEG . E 5 OXL A 1 203 406 OXL OXL . F 6 ZN B 1 301 301 ZN ZN . G 6 ZN B 1 302 302 ZN ZN . H 3 EDO B 1 303 401 EDO EDO . I 3 EDO B 1 304 402 EDO EDO . J 7 HOH A 1 301 165 HOH HOH . J 7 HOH A 2 302 126 HOH HOH . J 7 HOH A 3 303 248 HOH HOH . J 7 HOH A 4 304 10 HOH HOH . J 7 HOH A 5 305 177 HOH HOH . J 7 HOH A 6 306 31 HOH HOH . J 7 HOH A 7 307 9 HOH HOH . J 7 HOH A 8 308 101 HOH HOH . J 7 HOH A 9 309 134 HOH HOH . J 7 HOH A 10 310 66 HOH HOH . J 7 HOH A 11 311 30 HOH HOH . J 7 HOH A 12 312 60 HOH HOH . J 7 HOH A 13 313 56 HOH HOH . J 7 HOH A 14 314 67 HOH HOH . J 7 HOH A 15 315 45 HOH HOH . J 7 HOH A 16 316 147 HOH HOH . J 7 HOH A 17 317 247 HOH HOH . J 7 HOH A 18 318 90 HOH HOH . J 7 HOH A 19 319 17 HOH HOH . J 7 HOH A 20 320 23 HOH HOH . J 7 HOH A 21 321 11 HOH HOH . J 7 HOH A 22 322 173 HOH HOH . J 7 HOH A 23 323 127 HOH HOH . J 7 HOH A 24 324 209 HOH HOH . J 7 HOH A 25 325 35 HOH HOH . J 7 HOH A 26 326 233 HOH HOH . J 7 HOH A 27 327 3 HOH HOH . J 7 HOH A 28 328 151 HOH HOH . J 7 HOH A 29 329 219 HOH HOH . J 7 HOH A 30 330 99 HOH HOH . J 7 HOH A 31 331 8 HOH HOH . J 7 HOH A 32 332 98 HOH HOH . J 7 HOH A 33 333 20 HOH HOH . J 7 HOH A 34 334 21 HOH HOH . J 7 HOH A 35 335 49 HOH HOH . J 7 HOH A 36 336 228 HOH HOH . J 7 HOH A 37 337 113 HOH HOH . J 7 HOH A 38 338 54 HOH HOH . J 7 HOH A 39 339 75 HOH HOH . J 7 HOH A 40 340 169 HOH HOH . J 7 HOH A 41 341 170 HOH HOH . J 7 HOH A 42 342 44 HOH HOH . J 7 HOH A 43 343 5 HOH HOH . J 7 HOH A 44 344 22 HOH HOH . J 7 HOH A 45 345 1 HOH HOH . J 7 HOH A 46 346 153 HOH HOH . J 7 HOH A 47 347 198 HOH HOH . J 7 HOH A 48 348 4 HOH HOH . J 7 HOH A 49 349 68 HOH HOH . J 7 HOH A 50 350 69 HOH HOH . J 7 HOH A 51 351 245 HOH HOH . J 7 HOH A 52 352 131 HOH HOH . J 7 HOH A 53 353 32 HOH HOH . J 7 HOH A 54 354 62 HOH HOH . J 7 HOH A 55 355 88 HOH HOH . J 7 HOH A 56 356 47 HOH HOH . J 7 HOH A 57 357 40 HOH HOH . J 7 HOH A 58 358 252 HOH HOH . J 7 HOH A 59 359 6 HOH HOH . J 7 HOH A 60 360 196 HOH HOH . J 7 HOH A 61 361 42 HOH HOH . J 7 HOH A 62 362 16 HOH HOH . J 7 HOH A 63 363 97 HOH HOH . J 7 HOH A 64 364 96 HOH HOH . J 7 HOH A 65 365 235 HOH HOH . J 7 HOH A 66 366 71 HOH HOH . J 7 HOH A 67 367 167 HOH HOH . J 7 HOH A 68 368 25 HOH HOH . J 7 HOH A 69 369 53 HOH HOH . J 7 HOH A 70 370 152 HOH HOH . J 7 HOH A 71 371 184 HOH HOH . J 7 HOH A 72 372 92 HOH HOH . J 7 HOH A 73 373 70 HOH HOH . J 7 HOH A 74 374 128 HOH HOH . J 7 HOH A 75 375 142 HOH HOH . J 7 HOH A 76 376 77 HOH HOH . J 7 HOH A 77 377 195 HOH HOH . J 7 HOH A 78 378 48 HOH HOH . J 7 HOH A 79 379 103 HOH HOH . J 7 HOH A 80 380 38 HOH HOH . J 7 HOH A 81 381 212 HOH HOH . J 7 HOH A 82 382 179 HOH HOH . J 7 HOH A 83 383 63 HOH HOH . J 7 HOH A 84 384 156 HOH HOH . J 7 HOH A 85 385 52 HOH HOH . J 7 HOH A 86 386 221 HOH HOH . J 7 HOH A 87 387 61 HOH HOH . J 7 HOH A 88 388 141 HOH HOH . J 7 HOH A 89 389 130 HOH HOH . J 7 HOH A 90 390 86 HOH HOH . J 7 HOH A 91 391 160 HOH HOH . J 7 HOH A 92 392 105 HOH HOH . J 7 HOH A 93 393 26 HOH HOH . J 7 HOH A 94 394 200 HOH HOH . J 7 HOH A 95 395 2 HOH HOH . J 7 HOH A 96 396 18 HOH HOH . J 7 HOH A 97 397 234 HOH HOH . J 7 HOH A 98 398 242 HOH HOH . J 7 HOH A 99 399 94 HOH HOH . J 7 HOH A 100 400 197 HOH HOH . J 7 HOH A 101 401 36 HOH HOH . J 7 HOH A 102 402 55 HOH HOH . J 7 HOH A 103 403 27 HOH HOH . J 7 HOH A 104 404 188 HOH HOH . J 7 HOH A 105 405 213 HOH HOH . J 7 HOH A 106 406 159 HOH HOH . J 7 HOH A 107 407 115 HOH HOH . J 7 HOH A 108 408 118 HOH HOH . J 7 HOH A 109 409 243 HOH HOH . J 7 HOH A 110 410 117 HOH HOH . J 7 HOH A 111 411 120 HOH HOH . J 7 HOH A 112 412 251 HOH HOH . J 7 HOH A 113 413 182 HOH HOH . J 7 HOH A 114 414 224 HOH HOH . J 7 HOH A 115 415 191 HOH HOH . J 7 HOH A 116 416 249 HOH HOH . J 7 HOH A 117 417 217 HOH HOH . J 7 HOH A 118 418 123 HOH HOH . J 7 HOH A 119 419 104 HOH HOH . J 7 HOH A 120 420 244 HOH HOH . J 7 HOH A 121 421 227 HOH HOH . J 7 HOH A 122 422 187 HOH HOH . J 7 HOH A 123 423 162 HOH HOH . J 7 HOH A 124 424 174 HOH HOH . J 7 HOH A 125 425 125 HOH HOH . J 7 HOH A 126 426 214 HOH HOH . J 7 HOH A 127 427 201 HOH HOH . J 7 HOH A 128 428 183 HOH HOH . J 7 HOH A 129 429 225 HOH HOH . J 7 HOH A 130 430 114 HOH HOH . J 7 HOH A 131 431 110 HOH HOH . J 7 HOH A 132 432 186 HOH HOH . J 7 HOH A 133 433 107 HOH HOH . J 7 HOH A 134 434 155 HOH HOH . J 7 HOH A 135 435 176 HOH HOH . J 7 HOH A 136 436 91 HOH HOH . J 7 HOH A 137 437 39 HOH HOH . J 7 HOH A 138 438 50 HOH HOH . J 7 HOH A 139 439 157 HOH HOH . J 7 HOH A 140 440 230 HOH HOH . J 7 HOH A 141 441 194 HOH HOH . J 7 HOH A 142 442 109 HOH HOH . J 7 HOH A 143 443 216 HOH HOH . J 7 HOH A 144 444 106 HOH HOH . J 7 HOH A 145 445 203 HOH HOH . J 7 HOH A 146 446 124 HOH HOH . J 7 HOH A 147 447 250 HOH HOH . J 7 HOH A 148 448 129 HOH HOH . J 7 HOH A 149 449 135 HOH HOH . J 7 HOH A 150 450 102 HOH HOH . J 7 HOH A 151 451 241 HOH HOH . J 7 HOH A 152 452 190 HOH HOH . J 7 HOH A 153 453 121 HOH HOH . J 7 HOH A 154 454 204 HOH HOH . K 7 HOH B 1 401 57 HOH HOH . K 7 HOH B 2 402 46 HOH HOH . K 7 HOH B 3 403 175 HOH HOH . K 7 HOH B 4 404 95 HOH HOH . K 7 HOH B 5 405 93 HOH HOH . K 7 HOH B 6 406 59 HOH HOH . K 7 HOH B 7 407 206 HOH HOH . K 7 HOH B 8 408 236 HOH HOH . K 7 HOH B 9 409 240 HOH HOH . K 7 HOH B 10 410 51 HOH HOH . K 7 HOH B 11 411 193 HOH HOH . K 7 HOH B 12 412 19 HOH HOH . K 7 HOH B 13 413 81 HOH HOH . K 7 HOH B 14 414 185 HOH HOH . K 7 HOH B 15 415 207 HOH HOH . K 7 HOH B 16 416 222 HOH HOH . K 7 HOH B 17 417 7 HOH HOH . K 7 HOH B 18 418 111 HOH HOH . K 7 HOH B 19 419 12 HOH HOH . K 7 HOH B 20 420 58 HOH HOH . K 7 HOH B 21 421 84 HOH HOH . K 7 HOH B 22 422 72 HOH HOH . K 7 HOH B 23 423 154 HOH HOH . K 7 HOH B 24 424 208 HOH HOH . K 7 HOH B 25 425 205 HOH HOH . K 7 HOH B 26 426 14 HOH HOH . K 7 HOH B 27 427 80 HOH HOH . K 7 HOH B 28 428 34 HOH HOH . K 7 HOH B 29 429 161 HOH HOH . K 7 HOH B 30 430 13 HOH HOH . K 7 HOH B 31 431 237 HOH HOH . K 7 HOH B 32 432 136 HOH HOH . K 7 HOH B 33 433 178 HOH HOH . K 7 HOH B 34 434 232 HOH HOH . K 7 HOH B 35 435 79 HOH HOH . K 7 HOH B 36 436 100 HOH HOH . K 7 HOH B 37 437 132 HOH HOH . K 7 HOH B 38 438 15 HOH HOH . K 7 HOH B 39 439 83 HOH HOH . K 7 HOH B 40 440 28 HOH HOH . K 7 HOH B 41 441 137 HOH HOH . K 7 HOH B 42 442 33 HOH HOH . K 7 HOH B 43 443 74 HOH HOH . K 7 HOH B 44 444 24 HOH HOH . K 7 HOH B 45 445 163 HOH HOH . K 7 HOH B 46 446 76 HOH HOH . K 7 HOH B 47 447 108 HOH HOH . K 7 HOH B 48 448 220 HOH HOH . K 7 HOH B 49 449 37 HOH HOH . K 7 HOH B 50 450 139 HOH HOH . K 7 HOH B 51 451 215 HOH HOH . K 7 HOH B 52 452 65 HOH HOH . K 7 HOH B 53 453 122 HOH HOH . K 7 HOH B 54 454 112 HOH HOH . K 7 HOH B 55 455 172 HOH HOH . K 7 HOH B 56 456 231 HOH HOH . K 7 HOH B 57 457 144 HOH HOH . K 7 HOH B 58 458 158 HOH HOH . K 7 HOH B 59 459 229 HOH HOH . K 7 HOH B 60 460 116 HOH HOH . K 7 HOH B 61 461 181 HOH HOH . K 7 HOH B 62 462 202 HOH HOH . K 7 HOH B 63 463 189 HOH HOH . K 7 HOH B 64 464 87 HOH HOH . K 7 HOH B 65 465 82 HOH HOH . K 7 HOH B 66 466 148 HOH HOH . K 7 HOH B 67 467 89 HOH HOH . K 7 HOH B 68 468 149 HOH HOH . K 7 HOH B 69 469 164 HOH HOH . K 7 HOH B 70 470 210 HOH HOH . K 7 HOH B 71 471 146 HOH HOH . K 7 HOH B 72 472 226 HOH HOH . K 7 HOH B 73 473 180 HOH HOH . K 7 HOH B 74 474 78 HOH HOH . K 7 HOH B 75 475 171 HOH HOH . K 7 HOH B 76 476 43 HOH HOH . K 7 HOH B 77 477 238 HOH HOH . K 7 HOH B 78 478 138 HOH HOH . K 7 HOH B 79 479 166 HOH HOH . K 7 HOH B 80 480 41 HOH HOH . K 7 HOH B 81 481 119 HOH HOH . K 7 HOH B 82 482 150 HOH HOH . K 7 HOH B 83 483 145 HOH HOH . K 7 HOH B 84 484 246 HOH HOH . K 7 HOH B 85 485 218 HOH HOH . K 7 HOH B 86 486 239 HOH HOH . K 7 HOH B 87 487 64 HOH HOH . K 7 HOH B 88 488 133 HOH HOH . K 7 HOH B 89 489 211 HOH HOH . K 7 HOH B 90 490 199 HOH HOH . K 7 HOH B 91 491 85 HOH HOH . K 7 HOH B 92 492 168 HOH HOH . K 7 HOH B 93 493 143 HOH HOH . K 7 HOH B 94 494 223 HOH HOH . K 7 HOH B 95 495 192 HOH HOH . K 7 HOH B 96 496 140 HOH HOH . K 7 HOH B 97 497 29 HOH HOH . K 7 HOH B 98 498 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 47.374 4.371 -7.302 1 27.61 ? C1 EDO 304 B 1 HETATM 2 O O1 EDO . . . I 3 46.829 3.275 -8.038 1 23.06 ? O1 EDO 304 B 1 HETATM 3 C C2 EDO . . . I 3 47.529 3.935 -5.846 1 27.58 ? C2 EDO 304 B 1 HETATM 4 O O2 EDO . . . I 3 46.321 3.304 -5.403 1 25.82 ? O2 EDO 304 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #