data_5D1R # _model_server_result.job_id sv0n_MgudVvGGc1qfoBsKg _model_server_result.datetime_utc '2024-11-05 01:15:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5D1R # _exptl.entry_id 5D1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D1R _cell.length_a 40.444 _cell.length_b 86.533 _cell.length_c 129.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 235 A HIS 235 1_555 D NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc2 A NE2 HIS 236 A HIS 236 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 A NE2 HIS 237 A HIS 237 1_555 D NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc4 A NE2 HIS 238 A HIS 238 1_555 C NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 C NI NI . A NI 301 1_555 B ND1 HIS 234 B HIS 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C NI NI . A NI 301 1_555 B NE2 HIS 239 B HIS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc7 C NI NI . A NI 301 1_555 L O HOH . B HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc8 D NI NI . A NI 302 4_447 B NE2 HIS 238 B HIS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 D NI NI . A NI 302 1_555 L O HOH . B HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc10 F MG MG . A MG 304 1_555 K O HOH . A HOH 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 336 n n S O2 SO4 doub 337 n n S O3 SO4 sing 338 n n S O4 SO4 sing 339 n n # _atom_sites.entry_id 5D1R _atom_sites.fract_transf_matrix[1][1] 0.024726 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 301 1 NI Ni . D 2 NI A 1 302 2 NI Ni . E 3 SO4 A 1 303 2 SO4 SO4 . F 4 MG A 1 304 1 MG MG . G 5 56S A 1 305 1 56S LIG . H 3 SO4 B 1 301 1 SO4 SO4 . I 3 SO4 B 1 302 3 SO4 SO4 . J 4 MG B 1 303 1 MG MG . K 6 HOH A 1 401 109 HOH HOH . K 6 HOH A 2 402 212 HOH HOH . K 6 HOH A 3 403 156 HOH HOH . K 6 HOH A 4 404 63 HOH HOH . K 6 HOH A 5 405 62 HOH HOH . K 6 HOH A 6 406 197 HOH HOH . K 6 HOH A 7 407 122 HOH HOH . K 6 HOH A 8 408 76 HOH HOH . K 6 HOH A 9 409 84 HOH HOH . K 6 HOH A 10 410 203 HOH HOH . K 6 HOH A 11 411 188 HOH HOH . K 6 HOH A 12 412 233 HOH HOH . K 6 HOH A 13 413 73 HOH HOH . K 6 HOH A 14 414 165 HOH HOH . K 6 HOH A 15 415 226 HOH HOH . K 6 HOH A 16 416 69 HOH HOH . K 6 HOH A 17 417 39 HOH HOH . K 6 HOH A 18 418 128 HOH HOH . K 6 HOH A 19 419 27 HOH HOH . K 6 HOH A 20 420 110 HOH HOH . K 6 HOH A 21 421 1 HOH HOH . K 6 HOH A 22 422 65 HOH HOH . K 6 HOH A 23 423 53 HOH HOH . K 6 HOH A 24 424 239 HOH HOH . K 6 HOH A 25 425 14 HOH HOH . K 6 HOH A 26 426 75 HOH HOH . K 6 HOH A 27 427 54 HOH HOH . K 6 HOH A 28 428 202 HOH HOH . K 6 HOH A 29 429 144 HOH HOH . K 6 HOH A 30 430 37 HOH HOH . K 6 HOH A 31 431 225 HOH HOH . K 6 HOH A 32 432 147 HOH HOH . K 6 HOH A 33 433 205 HOH HOH . K 6 HOH A 34 434 108 HOH HOH . K 6 HOH A 35 435 227 HOH HOH . K 6 HOH A 36 436 99 HOH HOH . K 6 HOH A 37 437 9 HOH HOH . K 6 HOH A 38 438 107 HOH HOH . K 6 HOH A 39 439 130 HOH HOH . K 6 HOH A 40 440 195 HOH HOH . K 6 HOH A 41 441 83 HOH HOH . K 6 HOH A 42 442 237 HOH HOH . K 6 HOH A 43 443 78 HOH HOH . K 6 HOH A 44 444 57 HOH HOH . K 6 HOH A 45 445 48 HOH HOH . K 6 HOH A 46 446 18 HOH HOH . K 6 HOH A 47 447 33 HOH HOH . K 6 HOH A 48 448 112 HOH HOH . K 6 HOH A 49 449 10 HOH HOH . K 6 HOH A 50 450 217 HOH HOH . K 6 HOH A 51 451 41 HOH HOH . K 6 HOH A 52 452 173 HOH HOH . K 6 HOH A 53 453 213 HOH HOH . K 6 HOH A 54 454 7 HOH HOH . K 6 HOH A 55 455 88 HOH HOH . K 6 HOH A 56 456 3 HOH HOH . K 6 HOH A 57 457 36 HOH HOH . K 6 HOH A 58 458 169 HOH HOH . K 6 HOH A 59 459 11 HOH HOH . K 6 HOH A 60 460 158 HOH HOH . K 6 HOH A 61 461 79 HOH HOH . K 6 HOH A 62 462 64 HOH HOH . K 6 HOH A 63 463 28 HOH HOH . K 6 HOH A 64 464 46 HOH HOH . K 6 HOH A 65 465 77 HOH HOH . K 6 HOH A 66 466 209 HOH HOH . K 6 HOH A 67 467 198 HOH HOH . K 6 HOH A 68 468 25 HOH HOH . K 6 HOH A 69 469 19 HOH HOH . K 6 HOH A 70 470 5 HOH HOH . K 6 HOH A 71 471 38 HOH HOH . K 6 HOH A 72 472 71 HOH HOH . K 6 HOH A 73 473 15 HOH HOH . K 6 HOH A 74 474 44 HOH HOH . K 6 HOH A 75 475 174 HOH HOH . K 6 HOH A 76 476 24 HOH HOH . K 6 HOH A 77 477 101 HOH HOH . K 6 HOH A 78 478 32 HOH HOH . K 6 HOH A 79 479 180 HOH HOH . K 6 HOH A 80 480 35 HOH HOH . K 6 HOH A 81 481 240 HOH HOH . K 6 HOH A 82 482 138 HOH HOH . K 6 HOH A 83 483 104 HOH HOH . K 6 HOH A 84 484 26 HOH HOH . K 6 HOH A 85 485 141 HOH HOH . K 6 HOH A 86 486 13 HOH HOH . K 6 HOH A 87 487 74 HOH HOH . K 6 HOH A 88 488 229 HOH HOH . K 6 HOH A 89 489 81 HOH HOH . K 6 HOH A 90 490 179 HOH HOH . K 6 HOH A 91 491 149 HOH HOH . K 6 HOH A 92 492 176 HOH HOH . K 6 HOH A 93 493 113 HOH HOH . K 6 HOH A 94 494 82 HOH HOH . K 6 HOH A 95 495 118 HOH HOH . K 6 HOH A 96 496 199 HOH HOH . K 6 HOH A 97 497 155 HOH HOH . K 6 HOH A 98 498 190 HOH HOH . K 6 HOH A 99 499 47 HOH HOH . K 6 HOH A 100 500 161 HOH HOH . K 6 HOH A 101 501 132 HOH HOH . K 6 HOH A 102 502 196 HOH HOH . K 6 HOH A 103 503 126 HOH HOH . K 6 HOH A 104 504 6 HOH HOH . K 6 HOH A 105 505 139 HOH HOH . K 6 HOH A 106 506 232 HOH HOH . K 6 HOH A 107 507 157 HOH HOH . K 6 HOH A 108 508 117 HOH HOH . K 6 HOH A 109 509 153 HOH HOH . K 6 HOH A 110 510 111 HOH HOH . K 6 HOH A 111 511 215 HOH HOH . K 6 HOH A 112 512 146 HOH HOH . K 6 HOH A 113 513 115 HOH HOH . K 6 HOH A 114 514 168 HOH HOH . K 6 HOH A 115 515 135 HOH HOH . K 6 HOH A 116 516 183 HOH HOH . K 6 HOH A 117 517 211 HOH HOH . K 6 HOH A 118 518 154 HOH HOH . K 6 HOH A 119 519 191 HOH HOH . K 6 HOH A 120 520 133 HOH HOH . K 6 HOH A 121 521 123 HOH HOH . K 6 HOH A 122 522 222 HOH HOH . K 6 HOH A 123 523 91 HOH HOH . K 6 HOH A 124 524 184 HOH HOH . K 6 HOH A 125 525 218 HOH HOH . K 6 HOH A 126 526 186 HOH HOH . K 6 HOH A 127 527 193 HOH HOH . K 6 HOH A 128 528 96 HOH HOH . K 6 HOH A 129 529 230 HOH HOH . K 6 HOH A 130 530 214 HOH HOH . K 6 HOH A 131 531 142 HOH HOH . K 6 HOH A 132 532 92 HOH HOH . K 6 HOH A 133 533 192 HOH HOH . K 6 HOH A 134 534 137 HOH HOH . K 6 HOH A 135 535 102 HOH HOH . K 6 HOH A 136 536 228 HOH HOH . K 6 HOH A 137 537 31 HOH HOH . K 6 HOH A 138 538 140 HOH HOH . L 6 HOH B 1 401 204 HOH HOH . L 6 HOH B 2 402 152 HOH HOH . L 6 HOH B 3 403 120 HOH HOH . L 6 HOH B 4 404 121 HOH HOH . L 6 HOH B 5 405 21 HOH HOH . L 6 HOH B 6 406 164 HOH HOH . L 6 HOH B 7 407 72 HOH HOH . L 6 HOH B 8 408 12 HOH HOH . L 6 HOH B 9 409 29 HOH HOH . L 6 HOH B 10 410 90 HOH HOH . L 6 HOH B 11 411 234 HOH HOH . L 6 HOH B 12 412 66 HOH HOH . L 6 HOH B 13 413 86 HOH HOH . L 6 HOH B 14 414 134 HOH HOH . L 6 HOH B 15 415 148 HOH HOH . L 6 HOH B 16 416 23 HOH HOH . L 6 HOH B 17 417 89 HOH HOH . L 6 HOH B 18 418 40 HOH HOH . L 6 HOH B 19 419 52 HOH HOH . L 6 HOH B 20 420 201 HOH HOH . L 6 HOH B 21 421 70 HOH HOH . L 6 HOH B 22 422 4 HOH HOH . L 6 HOH B 23 423 87 HOH HOH . L 6 HOH B 24 424 127 HOH HOH . L 6 HOH B 25 425 206 HOH HOH . L 6 HOH B 26 426 30 HOH HOH . L 6 HOH B 27 427 131 HOH HOH . L 6 HOH B 28 428 172 HOH HOH . L 6 HOH B 29 429 166 HOH HOH . L 6 HOH B 30 430 68 HOH HOH . L 6 HOH B 31 431 235 HOH HOH . L 6 HOH B 32 432 124 HOH HOH . L 6 HOH B 33 433 151 HOH HOH . L 6 HOH B 34 434 16 HOH HOH . L 6 HOH B 35 435 236 HOH HOH . L 6 HOH B 36 436 34 HOH HOH . L 6 HOH B 37 437 50 HOH HOH . L 6 HOH B 38 438 98 HOH HOH . L 6 HOH B 39 439 2 HOH HOH . L 6 HOH B 40 440 85 HOH HOH . L 6 HOH B 41 441 56 HOH HOH . L 6 HOH B 42 442 8 HOH HOH . L 6 HOH B 43 443 105 HOH HOH . L 6 HOH B 44 444 49 HOH HOH . L 6 HOH B 45 445 145 HOH HOH . L 6 HOH B 46 446 61 HOH HOH . L 6 HOH B 47 447 103 HOH HOH . L 6 HOH B 48 448 59 HOH HOH . L 6 HOH B 49 449 246 HOH HOH . L 6 HOH B 50 450 177 HOH HOH . L 6 HOH B 51 451 58 HOH HOH . L 6 HOH B 52 452 94 HOH HOH . L 6 HOH B 53 453 80 HOH HOH . L 6 HOH B 54 454 163 HOH HOH . L 6 HOH B 55 455 106 HOH HOH . L 6 HOH B 56 456 116 HOH HOH . L 6 HOH B 57 457 22 HOH HOH . L 6 HOH B 58 458 231 HOH HOH . L 6 HOH B 59 459 97 HOH HOH . L 6 HOH B 60 460 17 HOH HOH . L 6 HOH B 61 461 187 HOH HOH . L 6 HOH B 62 462 223 HOH HOH . L 6 HOH B 63 463 20 HOH HOH . L 6 HOH B 64 464 67 HOH HOH . L 6 HOH B 65 465 43 HOH HOH . L 6 HOH B 66 466 175 HOH HOH . L 6 HOH B 67 467 114 HOH HOH . L 6 HOH B 68 468 241 HOH HOH . L 6 HOH B 69 469 95 HOH HOH . L 6 HOH B 70 470 160 HOH HOH . L 6 HOH B 71 471 182 HOH HOH . L 6 HOH B 72 472 45 HOH HOH . L 6 HOH B 73 473 119 HOH HOH . L 6 HOH B 74 474 136 HOH HOH . L 6 HOH B 75 475 208 HOH HOH . L 6 HOH B 76 476 51 HOH HOH . L 6 HOH B 77 477 159 HOH HOH . L 6 HOH B 78 478 42 HOH HOH . L 6 HOH B 79 479 219 HOH HOH . L 6 HOH B 80 480 143 HOH HOH . L 6 HOH B 81 481 93 HOH HOH . L 6 HOH B 82 482 181 HOH HOH . L 6 HOH B 83 483 238 HOH HOH . L 6 HOH B 84 484 170 HOH HOH . L 6 HOH B 85 485 60 HOH HOH . L 6 HOH B 86 486 243 HOH HOH . L 6 HOH B 87 487 245 HOH HOH . L 6 HOH B 88 488 178 HOH HOH . L 6 HOH B 89 489 221 HOH HOH . L 6 HOH B 90 490 150 HOH HOH . L 6 HOH B 91 491 220 HOH HOH . L 6 HOH B 92 492 162 HOH HOH . L 6 HOH B 93 493 216 HOH HOH . L 6 HOH B 94 494 207 HOH HOH . L 6 HOH B 95 495 167 HOH HOH . L 6 HOH B 96 496 194 HOH HOH . L 6 HOH B 97 497 224 HOH HOH . L 6 HOH B 98 498 189 HOH HOH . L 6 HOH B 99 499 210 HOH HOH . L 6 HOH B 100 500 185 HOH HOH . L 6 HOH B 101 501 171 HOH HOH . L 6 HOH B 102 502 200 HOH HOH . L 6 HOH B 103 503 125 HOH HOH . L 6 HOH B 104 504 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 3 -13.27 -18.796 126.492 1 56.05 ? S SO4 303 A 1 HETATM 2 O O1 SO4 . . . E 3 -14.228 -19.795 126.04 1 39.23 ? O1 SO4 303 A 1 HETATM 3 O O2 SO4 . . . E 3 -13.363 -17.566 125.708 1 57.12 ? O2 SO4 303 A 1 HETATM 4 O O3 SO4 . . . E 3 -11.933 -19.358 126.34 1 56.83 ? O3 SO4 303 A 1 HETATM 5 O O4 SO4 . . . E 3 -13.497 -18.468 127.898 1 49.97 ? O4 SO4 303 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #