data_5D1T
#
_model_server_result.job_id            UMBcz25bXnoMpllsbgqiIw 
_model_server_result.datetime_utc      '2024-12-26 17:09:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d1t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    5D1T 
#
_exptl.entry_id    5D1T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.448 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~-[3-(aminomethyl)benzyl]-N~2~-[(4-fluoro-3-methylphenyl)sulfonyl]-N-hydroxy-D-alaninamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D1T 
_cell.length_a            57.858 
_cell.length_b            76.544 
_cell.length_c            138.386 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D1T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 425 A HIS 686 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc2 A NE2 HIS 429 A HIS 690 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 A OE1 GLU 474 A GLU 735 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc4 B ZN ZN . A ZN 801 1_555 C O5 56R . A 56R 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc5 B ZN ZN . A ZN 801 1_555 C O3 56R . A 56R 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
#
_chem_comp.formula           'C18 H22 F N3 O4 S' 
_chem_comp.formula_weight    395.448 
_chem_comp.id                56R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~-[3-(aminomethyl)benzyl]-N~2~-[(4-fluoro-3-methylphenyl)sulfonyl]-N-hydroxy-D-alaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N5 C3 56R sing 1 n n 
C3 C23 56R sing 2 n n 
C23 C22 56R doub 3 n y 
C23 C24 56R sing 4 n y 
C22 C21 56R sing 5 n y 
C24 C19 56R doub 6 n y 
C21 C20 56R doub 7 n y 
O9 S7 56R doub 8 n n 
C19 C20 56R sing 9 n y 
C19 C18 56R sing 10 n n 
O8 S7 56R doub 11 n n 
C28 C1 56R sing 12 n n 
S7 N6 56R sing 13 n n 
S7 C10 56R sing 14 n n 
C1 N6 56R sing 15 n n 
C1 C2 56R sing 16 n n 
N6 C18 56R sing 17 n n 
N4 C2 56R sing 18 n n 
N4 O5 56R sing 19 n n 
C2 O3 56R doub 20 n n 
C10 C15 56R doub 21 n y 
C10 C11 56R sing 22 n y 
C15 C14 56R sing 23 n y 
C11 C12 56R doub 24 n y 
C14 C13 56R doub 25 n y 
C12 C13 56R sing 26 n y 
C12 C17 56R sing 27 n n 
C13 F16 56R sing 28 n n 
C1 H1 56R sing 29 n n 
C3 H2 56R sing 30 n n 
C3 H3 56R sing 31 n n 
O5 H4 56R sing 32 n n 
C11 H5 56R sing 33 n n 
C14 H6 56R sing 34 n n 
C15 H7 56R sing 35 n n 
C20 H8 56R sing 36 n n 
C21 H9 56R sing 37 n n 
C22 H10 56R sing 38 n n 
C24 H11 56R sing 39 n n 
C18 H12 56R sing 40 n n 
C18 H13 56R sing 41 n n 
C28 H14 56R sing 42 n n 
C28 H15 56R sing 43 n n 
C28 H16 56R sing 44 n n 
N4 H17 56R sing 45 n n 
C17 H18 56R sing 46 n n 
C17 H19 56R sing 47 n n 
C17 H20 56R sing 48 n n 
N5 H21 56R sing 49 n n 
N5 H22 56R sing 50 n n 
#
_atom_sites.entry_id                     5D1T 
_atom_sites.fract_transf_matrix[1][1]    0.017284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 1 ZN ZN . 
C 3 56R A 1 802 1 56R INH . 
D 4 HOH A 1 901 100 HOH HOH . 
D 4 HOH A 2 902 96 HOH HOH . 
D 4 HOH A 3 903 80 HOH HOH . 
D 4 HOH A 4 904 56 HOH HOH . 
D 4 HOH A 5 905 103 HOH HOH . 
D 4 HOH A 6 906 106 HOH HOH . 
D 4 HOH A 7 907 97 HOH HOH . 
D 4 HOH A 8 908 32 HOH HOH . 
D 4 HOH A 9 909 9 HOH HOH . 
D 4 HOH A 10 910 22 HOH HOH . 
D 4 HOH A 11 911 27 HOH HOH . 
D 4 HOH A 12 912 89 HOH HOH . 
D 4 HOH A 13 913 90 HOH HOH . 
D 4 HOH A 14 914 62 HOH HOH . 
D 4 HOH A 15 915 63 HOH HOH . 
D 4 HOH A 16 916 71 HOH HOH . 
D 4 HOH A 17 917 15 HOH HOH . 
D 4 HOH A 18 918 44 HOH HOH . 
D 4 HOH A 19 919 16 HOH HOH . 
D 4 HOH A 20 920 47 HOH HOH . 
D 4 HOH A 21 921 25 HOH HOH . 
D 4 HOH A 22 922 14 HOH HOH . 
D 4 HOH A 23 923 43 HOH HOH . 
D 4 HOH A 24 924 54 HOH HOH . 
D 4 HOH A 25 925 41 HOH HOH . 
D 4 HOH A 26 926 2 HOH HOH . 
D 4 HOH A 27 927 4 HOH HOH . 
D 4 HOH A 28 928 39 HOH HOH . 
D 4 HOH A 29 929 19 HOH HOH . 
D 4 HOH A 30 930 51 HOH HOH . 
D 4 HOH A 31 931 82 HOH HOH . 
D 4 HOH A 32 932 1 HOH HOH . 
D 4 HOH A 33 933 48 HOH HOH . 
D 4 HOH A 34 934 33 HOH HOH . 
D 4 HOH A 35 935 11 HOH HOH . 
D 4 HOH A 36 936 3 HOH HOH . 
D 4 HOH A 37 937 35 HOH HOH . 
D 4 HOH A 38 938 104 HOH HOH . 
D 4 HOH A 39 939 78 HOH HOH . 
D 4 HOH A 40 940 68 HOH HOH . 
D 4 HOH A 41 941 70 HOH HOH . 
D 4 HOH A 42 942 46 HOH HOH . 
D 4 HOH A 43 943 50 HOH HOH . 
D 4 HOH A 44 944 91 HOH HOH . 
D 4 HOH A 45 945 31 HOH HOH . 
D 4 HOH A 46 946 58 HOH HOH . 
D 4 HOH A 47 947 20 HOH HOH . 
D 4 HOH A 48 948 69 HOH HOH . 
D 4 HOH A 49 949 40 HOH HOH . 
D 4 HOH A 50 950 79 HOH HOH . 
D 4 HOH A 51 951 99 HOH HOH . 
D 4 HOH A 52 952 72 HOH HOH . 
D 4 HOH A 53 953 36 HOH HOH . 
D 4 HOH A 54 954 45 HOH HOH . 
D 4 HOH A 55 955 107 HOH HOH . 
D 4 HOH A 56 956 73 HOH HOH . 
D 4 HOH A 57 957 26 HOH HOH . 
D 4 HOH A 58 958 75 HOH HOH . 
D 4 HOH A 59 959 66 HOH HOH . 
D 4 HOH A 60 960 42 HOH HOH . 
D 4 HOH A 61 961 21 HOH HOH . 
D 4 HOH A 62 962 57 HOH HOH . 
D 4 HOH A 63 963 83 HOH HOH . 
D 4 HOH A 64 964 24 HOH HOH . 
D 4 HOH A 65 965 30 HOH HOH . 
D 4 HOH A 66 966 98 HOH HOH . 
D 4 HOH A 67 967 5 HOH HOH . 
D 4 HOH A 68 968 37 HOH HOH . 
D 4 HOH A 69 969 52 HOH HOH . 
D 4 HOH A 70 970 23 HOH HOH . 
D 4 HOH A 71 971 8 HOH HOH . 
D 4 HOH A 72 972 18 HOH HOH . 
D 4 HOH A 73 973 101 HOH HOH . 
D 4 HOH A 74 974 49 HOH HOH . 
D 4 HOH A 75 975 64 HOH HOH . 
D 4 HOH A 76 976 85 HOH HOH . 
D 4 HOH A 77 977 94 HOH HOH . 
D 4 HOH A 78 978 34 HOH HOH . 
D 4 HOH A 79 979 87 HOH HOH . 
D 4 HOH A 80 980 10 HOH HOH . 
D 4 HOH A 81 981 86 HOH HOH . 
D 4 HOH A 82 982 61 HOH HOH . 
D 4 HOH A 83 983 74 HOH HOH . 
D 4 HOH A 84 984 60 HOH HOH . 
D 4 HOH A 85 985 6 HOH HOH . 
D 4 HOH A 86 986 105 HOH HOH . 
D 4 HOH A 87 987 81 HOH HOH . 
D 4 HOH A 88 988 77 HOH HOH . 
D 4 HOH A 89 989 38 HOH HOH . 
D 4 HOH A 90 990 55 HOH HOH . 
D 4 HOH A 91 991 7 HOH HOH . 
D 4 HOH A 92 992 12 HOH HOH . 
D 4 HOH A 93 993 93 HOH HOH . 
D 4 HOH A 94 994 29 HOH HOH . 
D 4 HOH A 95 995 67 HOH HOH . 
D 4 HOH A 96 996 59 HOH HOH . 
D 4 HOH A 97 997 76 HOH HOH . 
D 4 HOH A 98 998 88 HOH HOH . 
D 4 HOH A 99 999 28 HOH HOH . 
D 4 HOH A 100 1000 95 HOH HOH . 
D 4 HOH A 101 1001 53 HOH HOH . 
D 4 HOH A 102 1002 92 HOH HOH . 
D 4 HOH A 103 1003 1 HOH HOH . 
D 4 HOH A 104 1004 102 HOH HOH . 
D 4 HOH A 105 1005 84 HOH HOH . 
D 4 HOH A 106 1006 108 HOH HOH . 
D 4 HOH A 107 1007 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 56R . . . C 3 11.471 18.82 26.528 1 44.2 ? C1 56R 802 A 1 
HETATM 2 C C2 56R . . . C 3 12.23 19.03 27.839 1 49.69 ? C2 56R 802 A 1 
HETATM 3 C C3 56R . . . C 3 8.485 16.559 21.897 1 62.14 ? C3 56R 802 A 1 
HETATM 4 O O5 56R . . . C 3 13.9 20.305 28.949 1 43.71 ? O5 56R 802 A 1 
HETATM 5 N N6 56R . . . C 3 9.98 18.854 26.537 1 52.51 ? N6 56R 802 A 1 
HETATM 6 C C10 56R . . . C 3 8.896 20.778 27.854 1 56.37 ? C10 56R 802 A 1 
HETATM 7 C C11 56R . . . C 3 7.922 20.3 28.734 1 53.85 ? C11 56R 802 A 1 
HETATM 8 C C12 56R . . . C 3 7.796 20.86 30.002 1 49.5 ? C12 56R 802 A 1 
HETATM 9 C C13 56R . . . C 3 8.64 21.886 30.385 1 48.94 ? C13 56R 802 A 1 
HETATM 10 C C14 56R . . . C 3 9.613 22.361 29.51 1 49.65 ? C14 56R 802 A 1 
HETATM 11 C C15 56R . . . C 3 9.745 21.807 28.245 1 45.63 ? C15 56R 802 A 1 
HETATM 12 C C19 56R . . . C 3 8.508 17.026 25.662 1 58.31 ? C19 56R 802 A 1 
HETATM 13 C C20 56R . . . C 3 7.221 16.609 25.994 1 67.34 ? C20 56R 802 A 1 
HETATM 14 C C21 56R . . . C 3 6.342 16.177 25.003 1 72.38 ? C21 56R 802 A 1 
HETATM 15 C C22 56R . . . C 3 6.756 16.159 23.675 1 72.68 ? C22 56R 802 A 1 
HETATM 16 C C24 56R . . . C 3 8.919 17.012 24.332 1 58.87 ? C24 56R 802 A 1 
HETATM 17 C C23 56R . . . C 3 8.045 16.576 23.342 1 69.52 ? C23 56R 802 A 1 
HETATM 18 C C18 56R . . . C 3 9.44 17.504 26.754 1 49.79 ? C18 56R 802 A 1 
HETATM 19 C C28 56R . . . C 3 12.005 17.503 25.976 1 44.54 ? C28 56R 802 A 1 
HETATM 20 N N4 56R . . . C 3 13.11 20.035 27.83 1 43.97 ? N4 56R 802 A 1 
HETATM 21 O O3 56R . . . C 3 12.099 18.312 28.836 1 46.16 ? O3 56R 802 A 1 
HETATM 22 S S7 56R . . . C 3 9.079 20.151 26.389 1 58.01 ? S7 56R 802 A 1 
HETATM 23 O O8 56R . . . C 3 7.785 19.928 25.796 1 50.23 ? O8 56R 802 A 1 
HETATM 24 O O9 56R . . . C 3 9.7 21.175 25.601 1 50.43 ? O9 56R 802 A 1 
HETATM 25 F F16 56R . . . C 3 8.522 22.443 31.606 1 50.42 ? F16 56R 802 A 1 
HETATM 26 C C17 56R . . . C 3 6.74 20.357 30.958 1 46.32 ? C17 56R 802 A 1 
HETATM 27 N N5 56R . . . C 3 7.468 17.312 21.117 1 64.68 ? N5 56R 802 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#