data_5D1U # _model_server_result.job_id vhtRmQ8ZajlrI_htN-JhEQ _model_server_result.datetime_utc '2024-12-26 11:13:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5D1U # _exptl.entry_id 5D1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.459 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-(6-aminohexyl)-N~2~-[(4-fluoro-3-methylphenyl)sulfonyl]-N-hydroxy-D-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D1U _cell.length_a 57.928 _cell.length_b 77.293 _cell.length_c 138.488 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 425 A HIS 686 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 A NE2 HIS 429 A HIS 690 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OE1 GLU 474 A GLU 735 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc4 B O5 56P . A 56P 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc5 B O3 56P . A 56P 801 1_555 C ZN ZN . A ZN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? # _chem_comp.formula 'C16 H26 F N3 O4 S' _chem_comp.formula_weight 375.459 _chem_comp.id 56P _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-(6-aminohexyl)-N~2~-[(4-fluoro-3-methylphenyl)sulfonyl]-N-hydroxy-D-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 56P sing 1 n n C19 C18 56P sing 2 n n O9 S7 56P doub 3 n n C28 C1 56P sing 4 n n O8 S7 56P doub 5 n n S7 N6 56P sing 6 n n S7 C10 56P sing 7 n n N6 C1 56P sing 8 n n N6 C18 56P sing 9 n n C1 C2 56P sing 10 n n C10 C15 56P doub 11 n y C10 C11 56P sing 12 n y C2 N4 56P sing 13 n n C2 O3 56P doub 14 n n N4 O5 56P sing 15 n n C15 C14 56P sing 16 n y C11 C12 56P doub 17 n y C14 C13 56P doub 18 n y C12 C13 56P sing 19 n y C12 C17 56P sing 20 n n C13 F16 56P sing 21 n n C1 H1 56P sing 22 n n C20 H2 56P sing 23 n n C20 H3 56P sing 24 n n O5 H5 56P sing 25 n n C11 H6 56P sing 26 n n C14 H7 56P sing 27 n n C15 H8 56P sing 28 n n C19 H9 56P sing 29 n n C19 H10 56P sing 30 n n C18 H11 56P sing 31 n n C18 H12 56P sing 32 n n C28 H13 56P sing 33 n n C28 H14 56P sing 34 n n C28 H15 56P sing 35 n n N4 H16 56P sing 36 n n C17 H17 56P sing 37 n n C17 H18 56P sing 38 n n C17 H19 56P sing 39 n n C20 C21 56P sing 40 n n C21 C22 56P sing 41 n n C22 C23 56P sing 42 n n C23 N24 56P sing 43 n n C21 H4 56P sing 44 n n C21 H20 56P sing 45 n n C22 H21 56P sing 46 n n C22 H22 56P sing 47 n n C23 H23 56P sing 48 n n C23 H24 56P sing 49 n n N24 H25 56P sing 50 n n N24 H26 56P sing 51 n n # _atom_sites.entry_id 5D1U _atom_sites.fract_transf_matrix[1][1] 0.017263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 56P A 1 801 1 56P INH . C 3 ZN A 1 802 1 ZN ZN . D 4 HOH A 1 901 7 HOH HOH . D 4 HOH A 2 902 5 HOH HOH . D 4 HOH A 3 903 1 HOH HOH . D 4 HOH A 4 904 6 HOH HOH . D 4 HOH A 5 905 4 HOH HOH . D 4 HOH A 6 906 5 HOH HOH . D 4 HOH A 7 907 9 HOH HOH . D 4 HOH A 8 908 8 HOH HOH . D 4 HOH A 9 909 2 HOH HOH . D 4 HOH A 10 910 1 HOH HOH . D 4 HOH A 11 911 4 HOH HOH . D 4 HOH A 12 912 3 HOH HOH . D 4 HOH A 13 913 7 HOH HOH . D 4 HOH A 14 914 8 HOH HOH . D 4 HOH A 15 915 2 HOH HOH . D 4 HOH A 16 916 6 HOH HOH . D 4 HOH A 17 917 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 56P . . . B 2 11.843 19.153 26.62 1 50.73 ? C1 56P 801 A 1 HETATM 2 C C2 56P . . . B 2 12.538 19.185 27.972 1 52.38 ? C2 56P 801 A 1 HETATM 3 C C20 56P . . . B 2 9.086 15.547 25.676 1 58.41 ? C20 56P 801 A 1 HETATM 4 O O5 56P . . . B 2 14.312 20.003 29.259 1 48.1 ? O5 56P 801 A 1 HETATM 5 N N6 56P . . . B 2 10.363 19.03 26.593 1 54.68 ? N6 56P 801 A 1 HETATM 6 C C10 56P . . . B 2 9.166 20.848 27.962 1 57.29 ? C10 56P 801 A 1 HETATM 7 C C11 56P . . . B 2 8.157 20.356 28.788 1 53.82 ? C11 56P 801 A 1 HETATM 8 C C12 56P . . . B 2 7.999 20.876 30.062 1 50.11 ? C12 56P 801 A 1 HETATM 9 C C13 56P . . . B 2 8.836 21.876 30.515 1 50.37 ? C13 56P 801 A 1 HETATM 10 C C14 56P . . . B 2 9.841 22.375 29.7 1 47.86 ? C14 56P 801 A 1 HETATM 11 C C15 56P . . . B 2 10.01 21.855 28.426 1 49.66 ? C15 56P 801 A 1 HETATM 12 C C19 56P . . . B 2 9.303 17.045 25.488 1 53.73 ? C19 56P 801 A 1 HETATM 13 C C18 56P . . . B 2 9.94 17.629 26.744 1 50.65 ? C18 56P 801 A 1 HETATM 14 C C28 56P . . . B 2 12.523 18.008 25.862 1 44.37 ? C28 56P 801 A 1 HETATM 15 N N4 56P . . . B 2 13.552 20.036 28.092 1 49.74 ? N4 56P 801 A 1 HETATM 16 O O3 56P . . . B 2 12.261 18.423 28.888 1 51.04 ? O3 56P 801 A 1 HETATM 17 S S7 56P . . . B 2 9.386 20.255 26.484 1 70.8 ? S7 56P 801 A 1 HETATM 18 O O8 56P . . . B 2 8.086 19.967 25.898 1 50.72 ? O8 56P 801 A 1 HETATM 19 O O9 56P . . . B 2 9.984 21.31 25.704 1 57.34 ? O9 56P 801 A 1 HETATM 20 F F16 56P . . . B 2 8.669 22.371 31.755 1 53.58 ? F16 56P 801 A 1 HETATM 21 C C17 56P . . . B 2 6.911 20.35 30.96 1 54.31 ? C17 56P 801 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #