data_5D1W
#
_model_server_result.job_id            ogYKB154ly1W5c0KroJC-g 
_model_server_result.datetime_utc      '2024-11-05 01:19:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d1w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    5D1W 
#
_exptl.entry_id    5D1W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          121.55 
_cell.angle_gamma         90 
_cell.entry_id            5D1W 
_cell.length_a            234.048 
_cell.length_b            75.493 
_cell.length_c            125.361 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D1W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H 1 1 
C,D,I,J 2 1 
E,F 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 258 n n 
C1 O2 PLM doub 259 n n 
C1 C2 PLM sing 260 n n 
O1 H PLM sing 261 n n 
C2 C3 PLM sing 262 n n 
C2 H21 PLM sing 263 n n 
C2 H22 PLM sing 264 n n 
C3 C4 PLM sing 265 n n 
C3 H31 PLM sing 266 n n 
C3 H32 PLM sing 267 n n 
C4 C5 PLM sing 268 n n 
C4 H41 PLM sing 269 n n 
C4 H42 PLM sing 270 n n 
C5 C6 PLM sing 271 n n 
C5 H51 PLM sing 272 n n 
C5 H52 PLM sing 273 n n 
C6 C7 PLM sing 274 n n 
C6 H61 PLM sing 275 n n 
C6 H62 PLM sing 276 n n 
C7 C8 PLM sing 277 n n 
C7 H71 PLM sing 278 n n 
C7 H72 PLM sing 279 n n 
C8 C9 PLM sing 280 n n 
C8 H81 PLM sing 281 n n 
C8 H82 PLM sing 282 n n 
C9 CA PLM sing 283 n n 
C9 H91 PLM sing 284 n n 
C9 H92 PLM sing 285 n n 
CA CB PLM sing 286 n n 
CA HA1 PLM sing 287 n n 
CA HA2 PLM sing 288 n n 
CB CC PLM sing 289 n n 
CB HB1 PLM sing 290 n n 
CB HB2 PLM sing 291 n n 
CC CD PLM sing 292 n n 
CC HC1 PLM sing 293 n n 
CC HC2 PLM sing 294 n n 
CD CE PLM sing 295 n n 
CD HD1 PLM sing 296 n n 
CD HD2 PLM sing 297 n n 
CE CF PLM sing 298 n n 
CE HE1 PLM sing 299 n n 
CE HE2 PLM sing 300 n n 
CF CG PLM sing 301 n n 
CF HF1 PLM sing 302 n n 
CF HF2 PLM sing 303 n n 
CG HG1 PLM sing 304 n n 
CG HG2 PLM sing 305 n n 
CG HG3 PLM sing 306 n n 
#
_atom_sites.entry_id                     5D1W 
_atom_sites.fract_transf_matrix[1][1]    0.004273 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002624 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009361 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PLM A 1 301 1 PLM LIG . 
H 2 PLM B 1 301 1 PLM LIG . 
I 2 PLM C 1 301 1 PLM LIG . 
J 2 PLM D 1 301 1 PLM LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . J 2 27.373 -69.424 -27.823 1 52.6 ? C1 PLM 301 D 1 
HETATM 2 O O1 PLM . . . J 2 28.485 -69.643 -28.386 1 53.45 -1 O1 PLM 301 D 1 
HETATM 3 O O2 PLM . . . J 2 26.345 -69.398 -28.557 1 52.91 ? O2 PLM 301 D 1 
HETATM 4 C C2 PLM . . . J 2 27.27 -69.237 -26.323 1 46.86 ? C2 PLM 301 D 1 
HETATM 5 C C3 PLM . . . J 2 26.768 -67.951 -25.731 1 39.04 ? C3 PLM 301 D 1 
HETATM 6 C C4 PLM . . . J 2 26.691 -67.832 -24.238 1 36.96 ? C4 PLM 301 D 1 
HETATM 7 C C5 PLM . . . J 2 25.906 -66.697 -23.636 1 35.49 ? C5 PLM 301 D 1 
HETATM 8 C C6 PLM . . . J 2 26.047 -66.435 -22.165 1 32.45 ? C6 PLM 301 D 1 
HETATM 9 C C7 PLM . . . J 2 25.018 -65.651 -21.399 1 26.47 ? C7 PLM 301 D 1 
HETATM 10 C C8 PLM . . . J 2 24.414 -66.317 -20.205 1 24.19 ? C8 PLM 301 D 1 
HETATM 11 C C9 PLM . . . J 2 24.529 -65.729 -18.844 1 18.12 ? C9 PLM 301 D 1 
HETATM 12 C CA PLM . . . J 2 24.05 -66.642 -17.761 1 17.94 ? CA PLM 301 D 1 
HETATM 13 C CB PLM . . . J 2 23.885 -66.067 -16.393 1 19.51 ? CB PLM 301 D 1 
HETATM 14 C CC PLM . . . J 2 22.887 -66.642 -15.44 1 17.96 ? CC PLM 301 D 1 
HETATM 15 C CD PLM . . . J 2 23.357 -67.45 -14.28 1 17.78 ? CD PLM 301 D 1 
HETATM 16 C CE PLM . . . J 2 22.369 -68.013 -13.291 1 19.21 ? CE PLM 301 D 1 
HETATM 17 C CF PLM . . . J 2 22.099 -67.272 -12.003 1 18.41 ? CF PLM 301 D 1 
HETATM 18 C CG PLM . . . J 2 21.646 -68.012 -10.779 1 15.05 ? CG PLM 301 D 1 
HETATM 19 H H21 PLM . . . J 2 26.674 -69.934 -26.001 1 56.23 ? H21 PLM 301 D 1 
HETATM 20 H H22 PLM . . . J 2 28.149 -69.412 -25.945 1 56.23 ? H22 PLM 301 D 1 
HETATM 21 H H31 PLM . . . J 2 25.873 -67.801 -26.08 1 46.85 ? H31 PLM 301 D 1 
HETATM 22 H H32 PLM . . . J 2 27.337 -67.233 -26.057 1 46.85 ? H32 PLM 301 D 1 
HETATM 23 H H41 PLM . . . J 2 26.306 -68.659 -23.902 1 44.35 ? H41 PLM 301 D 1 
HETATM 24 H H42 PLM . . . J 2 27.6 -67.772 -23.9 1 44.35 ? H42 PLM 301 D 1 
HETATM 25 H H51 PLM . . . J 2 26.154 -65.884 -24.107 1 42.58 ? H51 PLM 301 D 1 
HETATM 26 H H52 PLM . . . J 2 24.965 -66.868 -23.813 1 42.58 ? H52 PLM 301 D 1 
HETATM 27 H H61 PLM . . . J 2 26.133 -67.298 -21.725 1 38.95 ? H61 PLM 301 D 1 
HETATM 28 H H62 PLM . . . J 2 26.893 -65.97 -22.048 1 38.95 ? H62 PLM 301 D 1 
HETATM 29 H H71 PLM . . . J 2 25.423 -64.818 -21.106 1 31.76 ? H71 PLM 301 D 1 
HETATM 30 H H72 PLM . . . J 2 24.297 -65.433 -22.014 1 31.76 ? H72 PLM 301 D 1 
HETATM 31 H H81 PLM . . . J 2 23.463 -66.401 -20.388 1 29.03 ? H81 PLM 301 D 1 
HETATM 32 H H82 PLM . . . J 2 24.779 -67.216 -20.163 1 29.03 ? H82 PLM 301 D 1 
HETATM 33 H H91 PLM . . . J 2 25.462 -65.51 -18.678 1 21.74 ? H91 PLM 301 D 1 
HETATM 34 H H92 PLM . . . J 2 24.005 -64.911 -18.813 1 21.74 ? H92 PLM 301 D 1 
HETATM 35 H HA1 PLM . . . J 2 23.185 -66.989 -18.038 1 21.52 ? HA1 PLM 301 D 1 
HETATM 36 H HA2 PLM . . . J 2 24.667 -67.39 -17.699 1 21.52 ? HA2 PLM 301 D 1 
HETATM 37 H HB1 PLM . . . J 2 23.687 -65.12 -16.487 1 23.41 ? HB1 PLM 301 D 1 
HETATM 38 H HB2 PLM . . . J 2 24.754 -66.139 -15.963 1 23.41 ? HB2 PLM 301 D 1 
HETATM 39 H HC1 PLM . . . J 2 22.383 -65.895 -15.075 1 21.55 ? HC1 PLM 301 D 1 
HETATM 40 H HC2 PLM . . . J 2 22.269 -67.19 -15.952 1 21.55 ? HC2 PLM 301 D 1 
HETATM 41 H HD1 PLM . . . J 2 23.876 -68.193 -14.631 1 21.34 ? HD1 PLM 301 D 1 
HETATM 42 H HD2 PLM . . . J 2 23.965 -66.884 -13.775 1 21.34 ? HD2 PLM 301 D 1 
HETATM 43 H HE1 PLM . . . J 2 21.52 -68.13 -13.751 1 23.06 ? HE1 PLM 301 D 1 
HETATM 44 H HE2 PLM . . . J 2 22.692 -68.896 -13.044 1 23.06 ? HE2 PLM 301 D 1 
HETATM 45 H HF1 PLM . . . J 2 21.433 -66.591 -12.196 1 22.1 ? HF1 PLM 301 D 1 
HETATM 46 H HF2 PLM . . . J 2 22.922 -66.813 -11.765 1 22.1 ? HF2 PLM 301 D 1 
HETATM 47 H HG1 PLM . . . J 2 22.412 -68.44 -10.356 1 18.07 ? HG1 PLM 301 D 1 
HETATM 48 H HG2 PLM . . . J 2 21.238 -67.386 -10.153 1 18.07 ? HG2 PLM 301 D 1 
HETATM 49 H HG3 PLM . . . J 2 20.994 -68.69 -11.031 1 18.07 ? HG3 PLM 301 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           49 
#