data_5D26
#
_model_server_result.job_id            rdlJx6Rmmew-lNpBj15G9A 
_model_server_result.datetime_utc      '2024-11-24 22:02:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d26 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5D26 
#
_exptl.entry_id    5D26 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D26 
_cell.length_a            39.47 
_cell.length_b            49.59 
_cell.length_c            58.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D26 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E NA NA . A NA 204 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc2 E NA NA . A NA 204 1_555 F O HOH . A HOH 385 4_476 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc3 E NA NA . A NA 204 1_555 F O HOH . A HOH 404 4_476 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc4 E NA NA . A NA 204 1_555 F O HOH . A HOH 413 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc5 E NA NA . A NA 204 1_555 F O HOH . A HOH 433 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc6 E NA NA . A NA 204 1_555 F O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 70 n n 
O6 HO6 BU3 sing 71 n n 
C3 C4 BU3 sing 72 n n 
C3 C2 BU3 sing 73 n n 
C3 H3 BU3 sing 74 n n 
C4 H41 BU3 sing 75 n n 
C4 H42 BU3 sing 76 n n 
C4 H43 BU3 sing 77 n n 
C2 O5 BU3 sing 78 n n 
C2 C1 BU3 sing 79 n n 
C2 H2 BU3 sing 80 n n 
O5 HO5 BU3 sing 81 n n 
C1 H11 BU3 sing 82 n n 
C1 H12 BU3 sing 83 n n 
C1 H13 BU3 sing 84 n n 
#
_atom_sites.entry_id                     5D26 
_atom_sites.fract_transf_matrix[1][1]    0.025336 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017188 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 L28 A 1 201 1 L28 L28 . 
C 3 EDO A 1 202 1 EDO EDO . 
D 4 BU3 A 1 203 2 BU3 BU3 . 
E 5 NA A 1 204 1 NA NA . 
F 6 HOH A 1 301 146 HOH HOH . 
F 6 HOH A 2 302 16 HOH HOH . 
F 6 HOH A 3 303 138 HOH HOH . 
F 6 HOH A 4 304 147 HOH HOH . 
F 6 HOH A 5 305 60 HOH HOH . 
F 6 HOH A 6 306 73 HOH HOH . 
F 6 HOH A 7 307 139 HOH HOH . 
F 6 HOH A 8 308 101 HOH HOH . 
F 6 HOH A 9 309 140 HOH HOH . 
F 6 HOH A 10 310 141 HOH HOH . 
F 6 HOH A 11 311 63 HOH HOH . 
F 6 HOH A 12 312 105 HOH HOH . 
F 6 HOH A 13 313 127 HOH HOH . 
F 6 HOH A 14 314 130 HOH HOH . 
F 6 HOH A 15 315 10 HOH HOH . 
F 6 HOH A 16 316 54 HOH HOH . 
F 6 HOH A 17 317 45 HOH HOH . 
F 6 HOH A 18 318 7 HOH HOH . 
F 6 HOH A 19 319 109 HOH HOH . 
F 6 HOH A 20 320 51 HOH HOH . 
F 6 HOH A 21 321 6 HOH HOH . 
F 6 HOH A 22 322 49 HOH HOH . 
F 6 HOH A 23 323 108 HOH HOH . 
F 6 HOH A 24 324 122 HOH HOH . 
F 6 HOH A 25 325 121 HOH HOH . 
F 6 HOH A 26 326 2 HOH HOH . 
F 6 HOH A 27 327 29 HOH HOH . 
F 6 HOH A 28 328 161 HOH HOH . 
F 6 HOH A 29 329 67 HOH HOH . 
F 6 HOH A 30 330 75 HOH HOH . 
F 6 HOH A 31 331 42 HOH HOH . 
F 6 HOH A 32 332 14 HOH HOH . 
F 6 HOH A 33 333 167 HOH HOH . 
F 6 HOH A 34 334 79 HOH HOH . 
F 6 HOH A 35 335 15 HOH HOH . 
F 6 HOH A 36 336 59 HOH HOH . 
F 6 HOH A 37 337 131 HOH HOH . 
F 6 HOH A 38 338 43 HOH HOH . 
F 6 HOH A 39 339 144 HOH HOH . 
F 6 HOH A 40 340 152 HOH HOH . 
F 6 HOH A 41 341 142 HOH HOH . 
F 6 HOH A 42 342 32 HOH HOH . 
F 6 HOH A 43 343 20 HOH HOH . 
F 6 HOH A 44 344 90 HOH HOH . 
F 6 HOH A 45 345 52 HOH HOH . 
F 6 HOH A 46 346 159 HOH HOH . 
F 6 HOH A 47 347 53 HOH HOH . 
F 6 HOH A 48 348 65 HOH HOH . 
F 6 HOH A 49 349 69 HOH HOH . 
F 6 HOH A 50 350 25 HOH HOH . 
F 6 HOH A 51 351 115 HOH HOH . 
F 6 HOH A 52 352 111 HOH HOH . 
F 6 HOH A 53 353 5 HOH HOH . 
F 6 HOH A 54 354 162 HOH HOH . 
F 6 HOH A 55 355 78 HOH HOH . 
F 6 HOH A 56 356 1 HOH HOH . 
F 6 HOH A 57 357 145 HOH HOH . 
F 6 HOH A 58 358 164 HOH HOH . 
F 6 HOH A 59 359 132 HOH HOH . 
F 6 HOH A 60 360 94 HOH HOH . 
F 6 HOH A 61 361 95 HOH HOH . 
F 6 HOH A 62 362 93 HOH HOH . 
F 6 HOH A 63 363 9 HOH HOH . 
F 6 HOH A 64 364 28 HOH HOH . 
F 6 HOH A 65 365 72 HOH HOH . 
F 6 HOH A 66 366 96 HOH HOH . 
F 6 HOH A 67 367 150 HOH HOH . 
F 6 HOH A 68 368 92 HOH HOH . 
F 6 HOH A 69 369 13 HOH HOH . 
F 6 HOH A 70 370 57 HOH HOH . 
F 6 HOH A 71 371 116 HOH HOH . 
F 6 HOH A 72 372 64 HOH HOH . 
F 6 HOH A 73 373 166 HOH HOH . 
F 6 HOH A 74 374 89 HOH HOH . 
F 6 HOH A 75 375 8 HOH HOH . 
F 6 HOH A 76 376 80 HOH HOH . 
F 6 HOH A 77 377 87 HOH HOH . 
F 6 HOH A 78 378 148 HOH HOH . 
F 6 HOH A 79 379 91 HOH HOH . 
F 6 HOH A 80 380 44 HOH HOH . 
F 6 HOH A 81 381 40 HOH HOH . 
F 6 HOH A 82 382 55 HOH HOH . 
F 6 HOH A 83 383 47 HOH HOH . 
F 6 HOH A 84 384 70 HOH HOH . 
F 6 HOH A 85 385 36 HOH HOH . 
F 6 HOH A 86 386 136 HOH HOH . 
F 6 HOH A 87 387 120 HOH HOH . 
F 6 HOH A 88 388 33 HOH HOH . 
F 6 HOH A 89 389 81 HOH HOH . 
F 6 HOH A 90 390 71 HOH HOH . 
F 6 HOH A 91 391 110 HOH HOH . 
F 6 HOH A 92 392 66 HOH HOH . 
F 6 HOH A 93 393 12 HOH HOH . 
F 6 HOH A 94 394 77 HOH HOH . 
F 6 HOH A 95 395 168 HOH HOH . 
F 6 HOH A 96 396 11 HOH HOH . 
F 6 HOH A 97 397 24 HOH HOH . 
F 6 HOH A 98 398 134 HOH HOH . 
F 6 HOH A 99 399 26 HOH HOH . 
F 6 HOH A 100 400 86 HOH HOH . 
F 6 HOH A 101 401 18 HOH HOH . 
F 6 HOH A 102 402 62 HOH HOH . 
F 6 HOH A 103 403 46 HOH HOH . 
F 6 HOH A 104 404 38 HOH HOH . 
F 6 HOH A 105 405 21 HOH HOH . 
F 6 HOH A 106 406 85 HOH HOH . 
F 6 HOH A 107 407 4 HOH HOH . 
F 6 HOH A 108 408 39 HOH HOH . 
F 6 HOH A 109 409 76 HOH HOH . 
F 6 HOH A 110 410 158 HOH HOH . 
F 6 HOH A 111 411 27 HOH HOH . 
F 6 HOH A 112 412 41 HOH HOH . 
F 6 HOH A 113 413 34 HOH HOH . 
F 6 HOH A 114 414 19 HOH HOH . 
F 6 HOH A 115 415 31 HOH HOH . 
F 6 HOH A 116 416 125 HOH HOH . 
F 6 HOH A 117 417 61 HOH HOH . 
F 6 HOH A 118 418 56 HOH HOH . 
F 6 HOH A 119 419 99 HOH HOH . 
F 6 HOH A 120 420 74 HOH HOH . 
F 6 HOH A 121 421 88 HOH HOH . 
F 6 HOH A 122 422 22 HOH HOH . 
F 6 HOH A 123 423 30 HOH HOH . 
F 6 HOH A 124 424 58 HOH HOH . 
F 6 HOH A 125 425 119 HOH HOH . 
F 6 HOH A 126 426 133 HOH HOH . 
F 6 HOH A 127 427 23 HOH HOH . 
F 6 HOH A 128 428 151 HOH HOH . 
F 6 HOH A 129 429 100 HOH HOH . 
F 6 HOH A 130 430 48 HOH HOH . 
F 6 HOH A 131 431 50 HOH HOH . 
F 6 HOH A 132 432 68 HOH HOH . 
F 6 HOH A 133 433 37 HOH HOH . 
F 6 HOH A 134 434 17 HOH HOH . 
F 6 HOH A 135 435 3 HOH HOH . 
F 6 HOH A 136 436 143 HOH HOH . 
F 6 HOH A 137 437 112 HOH HOH . 
F 6 HOH A 138 438 98 HOH HOH . 
F 6 HOH A 139 439 102 HOH HOH . 
F 6 HOH A 140 440 117 HOH HOH . 
F 6 HOH A 141 441 106 HOH HOH . 
F 6 HOH A 142 442 154 HOH HOH . 
F 6 HOH A 143 443 114 HOH HOH . 
F 6 HOH A 144 444 83 HOH HOH . 
F 6 HOH A 145 445 128 HOH HOH . 
F 6 HOH A 146 446 123 HOH HOH . 
F 6 HOH A 147 447 129 HOH HOH . 
F 6 HOH A 148 448 137 HOH HOH . 
F 6 HOH A 149 449 135 HOH HOH . 
F 6 HOH A 150 450 160 HOH HOH . 
F 6 HOH A 151 451 84 HOH HOH . 
F 6 HOH A 152 452 157 HOH HOH . 
F 6 HOH A 153 453 153 HOH HOH . 
F 6 HOH A 154 454 156 HOH HOH . 
F 6 HOH A 155 455 103 HOH HOH . 
F 6 HOH A 156 456 97 HOH HOH . 
F 6 HOH A 157 457 155 HOH HOH . 
F 6 HOH A 158 458 118 HOH HOH . 
F 6 HOH A 159 459 149 HOH HOH . 
F 6 HOH A 160 460 163 HOH HOH . 
F 6 HOH A 161 461 35 HOH HOH . 
F 6 HOH A 162 462 124 HOH HOH . 
F 6 HOH A 163 463 126 HOH HOH . 
F 6 HOH A 164 464 107 HOH HOH . 
F 6 HOH A 165 465 82 HOH HOH . 
F 6 HOH A 166 466 165 HOH HOH . 
F 6 HOH A 167 467 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . D 4 20.312 46.902 -0.486 1 17 ? O6 BU3 203 A 1 
HETATM 2 C C3 BU3 . . . D 4 18.9 46.667 -0.495 1 16.33 ? C3 BU3 203 A 1 
HETATM 3 C C4 BU3 . . . D 4 18.36 46.977 -1.888 1 16.24 ? C4 BU3 203 A 1 
HETATM 4 C C2 BU3 . . . D 4 18.254 47.537 0.587 1 16.29 ? C2 BU3 203 A 1 
HETATM 5 O O5 BU3 . . . D 4 18.883 47.32 1.862 1 15.89 ? O5 BU3 203 A 1 
HETATM 6 C C1 BU3 . . . D 4 16.759 47.254 0.725 1 16.18 ? C1 BU3 203 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           566 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           6 
#