data_5D2A
#
_model_server_result.job_id            Fr3VED9S5WUUHL5mOYlGvg 
_model_server_result.datetime_utc      '2024-10-28 02:33:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d2a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":201}' 
#
_entry.id    5D2A 
#
_exptl.entry_id    5D2A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5D2A 
_cell.length_a            105.107 
_cell.length_b            105.107 
_cell.length_c            111.092 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D2A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 6 C CYS 7 1_555 C SG CYS 6 C CYS 7 11_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
covale ? covale1 C N ALA 1 C ALA 1 1_555 J C1' PHB . C PHB 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale2 J O4 PHB . C PHB 101 1_555 K C1 GAL . C GAL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
covale ? covale3 D N ALA 1 D ALA 2 1_555 L C7 ZDC . D ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale4 E N ALA 1 E ALA 2 1_555 M C7 ZDC . E ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? 
metalc ? metalc1 A O ASN 21 A ASN 21 1_555 G CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc2 A OE1 GLU 95 A GLU 95 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc3 A OE2 GLU 95 A GLU 95 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 A OD1 ASP 99 A ASP 99 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc5 A OD1 ASP 101 A ASP 101 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc6 A OD1 ASP 101 A ASP 101 1_555 G CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? 
metalc ? metalc7 A OD2 ASP 101 A ASP 101 1_555 G CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc8 A OD1 ASN 103 A ASN 103 1_555 G CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc9 A OD1 ASP 104 A ASP 104 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc10 A OD2 ASP 104 A ASP 104 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc11 A OD1 ASP 104 A ASP 104 1_555 G CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc12 A O GLY 114 A GLY 114 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc13 F CA CA . A CA 201 1_555 M O3 ZDC . E ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc14 F CA CA . A CA 201 1_555 M O4 ZDC . E ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc15 G CA CA . A CA 202 1_555 B O GLY 114 B GLY 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc16 G CA CA . A CA 202 1_555 M O3 ZDC . E ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc17 G CA CA . A CA 202 1_555 M O2 ZDC . E ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc18 B O ASN 21 B ASN 21 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc19 B OE1 GLU 95 B GLU 95 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc20 B OE2 GLU 95 B GLU 95 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc21 B OD1 ASP 99 B ASP 99 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc22 B OD1 ASP 101 B ASP 101 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc23 B OD1 ASP 101 B ASP 101 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? 
metalc ? metalc24 B OD2 ASP 101 B ASP 101 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc25 B OD1 ASN 103 B ASN 103 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc26 B OD1 ASP 104 B ASP 104 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc27 B OD2 ASP 104 B ASP 104 1_555 H CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc28 B OD1 ASP 104 B ASP 104 1_555 I CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc29 H CA CA . B CA 201 1_555 L O4 ZDC . D ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc30 H CA CA . B CA 201 1_555 L O3 ZDC . D ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc31 I CA CA . B CA 202 1_555 L O3 ZDC . D ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc32 I CA CA . B CA 202 1_555 L O2 ZDC . D ZDC 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D2A 
_atom_sites.fract_transf_matrix[1][1]    0.009514 
_atom_sites.fract_transf_matrix[1][2]    0.005493 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010986 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 CA A 1 201 997 CA CA . 
G 4 CA A 1 202 998 CA CA . 
H 4 CA B 1 201 997 CA CA . 
I 4 CA B 1 202 998 CA CA . 
J 5 PHB C 1 101 200 PHB GM9 . 
K 6 GAL C 1 102 200 GAL GM9 . 
L 7 ZDC D 1 101 200 ZDC GM9 . 
M 7 ZDC E 1 101 200 ZDC GM9 . 
N 8 HOH A 1 301 9 HOH HOH . 
N 8 HOH A 2 302 22 HOH HOH . 
N 8 HOH A 3 303 4 HOH HOH . 
N 8 HOH A 4 304 1 HOH HOH . 
N 8 HOH A 5 305 81 HOH HOH . 
N 8 HOH A 6 306 80 HOH HOH . 
N 8 HOH A 7 307 23 HOH HOH . 
N 8 HOH A 8 308 30 HOH HOH . 
N 8 HOH A 9 309 46 HOH HOH . 
N 8 HOH A 10 310 82 HOH HOH . 
N 8 HOH A 11 311 62 HOH HOH . 
N 8 HOH A 12 312 13 HOH HOH . 
N 8 HOH A 13 313 19 HOH HOH . 
N 8 HOH A 14 314 15 HOH HOH . 
N 8 HOH A 15 315 59 HOH HOH . 
N 8 HOH A 16 316 50 HOH HOH . 
N 8 HOH A 17 317 84 HOH HOH . 
N 8 HOH A 18 318 28 HOH HOH . 
N 8 HOH A 19 319 7 HOH HOH . 
N 8 HOH A 20 320 17 HOH HOH . 
N 8 HOH A 21 321 27 HOH HOH . 
N 8 HOH A 22 322 66 HOH HOH . 
N 8 HOH A 23 323 26 HOH HOH . 
N 8 HOH A 24 324 71 HOH HOH . 
N 8 HOH A 25 325 48 HOH HOH . 
N 8 HOH A 26 326 38 HOH HOH . 
N 8 HOH A 27 327 3 HOH HOH . 
N 8 HOH A 28 328 40 HOH HOH . 
N 8 HOH A 29 329 83 HOH HOH . 
N 8 HOH A 30 330 2 HOH HOH . 
N 8 HOH A 31 331 56 HOH HOH . 
N 8 HOH A 32 332 36 HOH HOH . 
N 8 HOH A 33 333 61 HOH HOH . 
N 8 HOH A 34 334 41 HOH HOH . 
N 8 HOH A 35 335 43 HOH HOH . 
N 8 HOH A 36 336 45 HOH HOH . 
N 8 HOH A 37 337 37 HOH HOH . 
O 8 HOH B 1 301 18 HOH HOH . 
O 8 HOH B 2 302 32 HOH HOH . 
O 8 HOH B 3 303 31 HOH HOH . 
O 8 HOH B 4 304 8 HOH HOH . 
O 8 HOH B 5 305 5 HOH HOH . 
O 8 HOH B 6 306 24 HOH HOH . 
O 8 HOH B 7 307 16 HOH HOH . 
O 8 HOH B 8 308 29 HOH HOH . 
O 8 HOH B 9 309 42 HOH HOH . 
O 8 HOH B 10 310 14 HOH HOH . 
O 8 HOH B 11 311 39 HOH HOH . 
O 8 HOH B 12 312 65 HOH HOH . 
O 8 HOH B 13 313 20 HOH HOH . 
O 8 HOH B 14 314 21 HOH HOH . 
O 8 HOH B 15 315 51 HOH HOH . 
O 8 HOH B 16 316 57 HOH HOH . 
O 8 HOH B 17 317 25 HOH HOH . 
O 8 HOH B 18 318 64 HOH HOH . 
O 8 HOH B 19 319 11 HOH HOH . 
O 8 HOH B 20 320 6 HOH HOH . 
O 8 HOH B 21 321 67 HOH HOH . 
O 8 HOH B 22 322 52 HOH HOH . 
O 8 HOH B 23 323 12 HOH HOH . 
O 8 HOH B 24 324 55 HOH HOH . 
O 8 HOH B 25 325 10 HOH HOH . 
O 8 HOH B 26 326 73 HOH HOH . 
O 8 HOH B 27 327 72 HOH HOH . 
O 8 HOH B 28 328 53 HOH HOH . 
O 8 HOH B 29 329 63 HOH HOH . 
O 8 HOH B 30 330 60 HOH HOH . 
O 8 HOH B 31 331 47 HOH HOH . 
O 8 HOH B 32 332 49 HOH HOH . 
O 8 HOH B 33 333 69 HOH HOH . 
O 8 HOH B 34 334 44 HOH HOH . 
O 8 HOH B 35 335 54 HOH HOH . 
O 8 HOH B 36 336 34 HOH HOH . 
O 8 HOH B 37 337 33 HOH HOH . 
O 8 HOH B 38 338 68 HOH HOH . 
O 8 HOH B 39 339 74 HOH HOH . 
O 8 HOH B 40 340 35 HOH HOH . 
O 8 HOH B 41 341 70 HOH HOH . 
O 8 HOH B 42 342 58 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -65.148 
_atom_site.Cartn_y               12.78 
_atom_site.Cartn_z               15.004 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.55 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#