data_5D3A # _model_server_result.job_id c89YIKRz8LCi3qbvfY89CA _model_server_result.datetime_utc '2024-10-28 02:43:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 5D3A # _exptl.entry_id 5D3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5D3A _cell.length_a 82.02 _cell.length_b 82.02 _cell.length_c 70.57 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5D3A _atom_sites.fract_transf_matrix[1][1] 0.012192 _atom_sites.fract_transf_matrix[1][2] 0.007039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 101 1 GOL GOL . D 2 GOL B 1 102 2 GOL GOL . E 3 HOH A 1 101 6 HOH HOH . E 3 HOH A 2 102 5 HOH HOH . E 3 HOH A 3 103 7 HOH HOH . F 3 HOH B 1 201 4 HOH HOH . F 3 HOH B 2 202 1 HOH HOH . F 3 HOH B 3 203 2 HOH HOH . F 3 HOH B 4 204 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 16.097 -73.176 61.738 1 59.92 ? C1 GOL 102 B 1 HETATM 2 O O1 GOL . . . D 2 15.329 -73.273 62.916 1 69.73 ? O1 GOL 102 B 1 HETATM 3 C C2 GOL . . . D 2 16.534 -71.733 61.513 1 62.96 ? C2 GOL 102 B 1 HETATM 4 O O2 GOL . . . D 2 15.864 -71.203 60.391 1 55.96 ? O2 GOL 102 B 1 HETATM 5 C C3 GOL . . . D 2 16.241 -70.883 62.745 1 49.74 ? C3 GOL 102 B 1 HETATM 6 O O3 GOL . . . D 2 16.652 -69.554 62.51 1 57.92 ? O3 GOL 102 B 1 HETATM 7 H H11 GOL . . . D 2 16.976 -73.816 61.82 1 71.91 ? H11 GOL 102 B 1 HETATM 8 H H12 GOL . . . D 2 15.508 -73.517 60.887 1 71.91 ? H12 GOL 102 B 1 HETATM 9 H HO1 GOL . . . D 2 14.999 -74.19 63.015 1 83.67 ? HO1 GOL 102 B 1 HETATM 10 H H2 GOL . . . D 2 17.61 -71.722 61.335 1 75.55 ? H2 GOL 102 B 1 HETATM 11 H HO2 GOL . . . D 2 14.9 -71.189 60.563 1 67.15 ? HO2 GOL 102 B 1 HETATM 12 H H31 GOL . . . D 2 15.174 -70.906 62.964 1 59.69 ? H31 GOL 102 B 1 HETATM 13 H H32 GOL . . . D 2 16.774 -71.287 63.607 1 59.69 ? H32 GOL 102 B 1 HETATM 14 H HO3 GOL . . . D 2 16.313 -69.257 61.639 1 69.5 ? HO3 GOL 102 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #