data_5D3P
#
_model_server_result.job_id            '_jZDgA0g_XSo3LQTtGYOSg' 
_model_server_result.datetime_utc      '2024-10-19 03:42:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d3p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5D3P 
#
_exptl.entry_id    5D3P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D3P 
_cell.length_a            38.7 
_cell.length_b            44.55 
_cell.length_c            78.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D3P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D3P 
_atom_sites.fract_transf_matrix[1][1]    0.02584 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 57E A 1 201 1 57E L41 . 
C 3 NI A 1 202 1 NI NI . 
D 4 HOH A 1 301 28 HOH HOH . 
D 4 HOH A 2 302 77 HOH HOH . 
D 4 HOH A 3 303 138 HOH HOH . 
D 4 HOH A 4 304 132 HOH HOH . 
D 4 HOH A 5 305 47 HOH HOH . 
D 4 HOH A 6 306 65 HOH HOH . 
D 4 HOH A 7 307 52 HOH HOH . 
D 4 HOH A 8 308 118 HOH HOH . 
D 4 HOH A 9 309 73 HOH HOH . 
D 4 HOH A 10 310 124 HOH HOH . 
D 4 HOH A 11 311 127 HOH HOH . 
D 4 HOH A 12 312 101 HOH HOH . 
D 4 HOH A 13 313 135 HOH HOH . 
D 4 HOH A 14 314 41 HOH HOH . 
D 4 HOH A 15 315 136 HOH HOH . 
D 4 HOH A 16 316 34 HOH HOH . 
D 4 HOH A 17 317 104 HOH HOH . 
D 4 HOH A 18 318 81 HOH HOH . 
D 4 HOH A 19 319 12 HOH HOH . 
D 4 HOH A 20 320 27 HOH HOH . 
D 4 HOH A 21 321 74 HOH HOH . 
D 4 HOH A 22 322 46 HOH HOH . 
D 4 HOH A 23 323 66 HOH HOH . 
D 4 HOH A 24 324 83 HOH HOH . 
D 4 HOH A 25 325 55 HOH HOH . 
D 4 HOH A 26 326 48 HOH HOH . 
D 4 HOH A 27 327 106 HOH HOH . 
D 4 HOH A 28 328 59 HOH HOH . 
D 4 HOH A 29 329 117 HOH HOH . 
D 4 HOH A 30 330 88 HOH HOH . 
D 4 HOH A 31 331 87 HOH HOH . 
D 4 HOH A 32 332 7 HOH HOH . 
D 4 HOH A 33 333 24 HOH HOH . 
D 4 HOH A 34 334 120 HOH HOH . 
D 4 HOH A 35 335 2 HOH HOH . 
D 4 HOH A 36 336 29 HOH HOH . 
D 4 HOH A 37 337 9 HOH HOH . 
D 4 HOH A 38 338 116 HOH HOH . 
D 4 HOH A 39 339 99 HOH HOH . 
D 4 HOH A 40 340 98 HOH HOH . 
D 4 HOH A 41 341 137 HOH HOH . 
D 4 HOH A 42 342 115 HOH HOH . 
D 4 HOH A 43 343 103 HOH HOH . 
D 4 HOH A 44 344 19 HOH HOH . 
D 4 HOH A 45 345 30 HOH HOH . 
D 4 HOH A 46 346 25 HOH HOH . 
D 4 HOH A 47 347 94 HOH HOH . 
D 4 HOH A 48 348 21 HOH HOH . 
D 4 HOH A 49 349 23 HOH HOH . 
D 4 HOH A 50 350 69 HOH HOH . 
D 4 HOH A 51 351 4 HOH HOH . 
D 4 HOH A 52 352 10 HOH HOH . 
D 4 HOH A 53 353 49 HOH HOH . 
D 4 HOH A 54 354 17 HOH HOH . 
D 4 HOH A 55 355 16 HOH HOH . 
D 4 HOH A 56 356 53 HOH HOH . 
D 4 HOH A 57 357 33 HOH HOH . 
D 4 HOH A 58 358 26 HOH HOH . 
D 4 HOH A 59 359 111 HOH HOH . 
D 4 HOH A 60 360 43 HOH HOH . 
D 4 HOH A 61 361 11 HOH HOH . 
D 4 HOH A 62 362 78 HOH HOH . 
D 4 HOH A 63 363 76 HOH HOH . 
D 4 HOH A 64 364 51 HOH HOH . 
D 4 HOH A 65 365 1 HOH HOH . 
D 4 HOH A 66 366 31 HOH HOH . 
D 4 HOH A 67 367 108 HOH HOH . 
D 4 HOH A 68 368 143 HOH HOH . 
D 4 HOH A 69 369 140 HOH HOH . 
D 4 HOH A 70 370 62 HOH HOH . 
D 4 HOH A 71 371 8 HOH HOH . 
D 4 HOH A 72 372 121 HOH HOH . 
D 4 HOH A 73 373 45 HOH HOH . 
D 4 HOH A 74 374 39 HOH HOH . 
D 4 HOH A 75 375 91 HOH HOH . 
D 4 HOH A 76 376 3 HOH HOH . 
D 4 HOH A 77 377 61 HOH HOH . 
D 4 HOH A 78 378 86 HOH HOH . 
D 4 HOH A 79 379 18 HOH HOH . 
D 4 HOH A 80 380 42 HOH HOH . 
D 4 HOH A 81 381 13 HOH HOH . 
D 4 HOH A 82 382 126 HOH HOH . 
D 4 HOH A 83 383 89 HOH HOH . 
D 4 HOH A 84 384 6 HOH HOH . 
D 4 HOH A 85 385 44 HOH HOH . 
D 4 HOH A 86 386 68 HOH HOH . 
D 4 HOH A 87 387 20 HOH HOH . 
D 4 HOH A 88 388 15 HOH HOH . 
D 4 HOH A 89 389 54 HOH HOH . 
D 4 HOH A 90 390 60 HOH HOH . 
D 4 HOH A 91 391 125 HOH HOH . 
D 4 HOH A 92 392 40 HOH HOH . 
D 4 HOH A 93 393 5 HOH HOH . 
D 4 HOH A 94 394 139 HOH HOH . 
D 4 HOH A 95 395 100 HOH HOH . 
D 4 HOH A 96 396 80 HOH HOH . 
D 4 HOH A 97 397 122 HOH HOH . 
D 4 HOH A 98 398 105 HOH HOH . 
D 4 HOH A 99 399 50 HOH HOH . 
D 4 HOH A 100 400 119 HOH HOH . 
D 4 HOH A 101 401 79 HOH HOH . 
D 4 HOH A 102 402 129 HOH HOH . 
D 4 HOH A 103 403 57 HOH HOH . 
D 4 HOH A 104 404 70 HOH HOH . 
D 4 HOH A 105 405 71 HOH HOH . 
D 4 HOH A 106 406 56 HOH HOH . 
D 4 HOH A 107 407 95 HOH HOH . 
D 4 HOH A 108 408 35 HOH HOH . 
D 4 HOH A 109 409 36 HOH HOH . 
D 4 HOH A 110 410 145 HOH HOH . 
D 4 HOH A 111 411 67 HOH HOH . 
D 4 HOH A 112 412 92 HOH HOH . 
D 4 HOH A 113 413 128 HOH HOH . 
D 4 HOH A 114 414 113 HOH HOH . 
D 4 HOH A 115 415 96 HOH HOH . 
D 4 HOH A 116 416 112 HOH HOH . 
D 4 HOH A 117 417 85 HOH HOH . 
D 4 HOH A 118 418 130 HOH HOH . 
D 4 HOH A 119 419 133 HOH HOH . 
D 4 HOH A 120 420 93 HOH HOH . 
D 4 HOH A 121 421 14 HOH HOH . 
D 4 HOH A 122 422 22 HOH HOH . 
D 4 HOH A 123 423 134 HOH HOH . 
D 4 HOH A 124 424 38 HOH HOH . 
D 4 HOH A 125 425 90 HOH HOH . 
D 4 HOH A 126 426 72 HOH HOH . 
D 4 HOH A 127 427 37 HOH HOH . 
D 4 HOH A 128 428 84 HOH HOH . 
D 4 HOH A 129 429 107 HOH HOH . 
D 4 HOH A 130 430 82 HOH HOH . 
D 4 HOH A 131 431 123 HOH HOH . 
D 4 HOH A 132 432 142 HOH HOH . 
D 4 HOH A 133 433 63 HOH HOH . 
D 4 HOH A 134 434 58 HOH HOH . 
D 4 HOH A 135 435 110 HOH HOH . 
D 4 HOH A 136 436 114 HOH HOH . 
D 4 HOH A 137 437 144 HOH HOH . 
D 4 HOH A 138 438 141 HOH HOH . 
D 4 HOH A 139 439 32 HOH HOH . 
D 4 HOH A 140 440 64 HOH HOH . 
D 4 HOH A 141 441 131 HOH HOH . 
D 4 HOH A 142 442 109 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -20.403 
_atom_site.Cartn_y               -16.911 
_atom_site.Cartn_z               20.573 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.74 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#