data_5D3S
#
_model_server_result.job_id            6tomZDBZZPGKm8afRcVCug 
_model_server_result.datetime_utc      '2024-11-21 23:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5D3S 
#
_exptl.entry_id    5D3S 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D3S 
_cell.length_a            39.48 
_cell.length_b            49.51 
_cell.length_c            57.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5D3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 126 n n 
O6 HO6 BU3 sing 127 n n 
C3 C4 BU3 sing 128 n n 
C3 C2 BU3 sing 129 n n 
C3 H3 BU3 sing 130 n n 
C4 H41 BU3 sing 131 n n 
C4 H42 BU3 sing 132 n n 
C4 H43 BU3 sing 133 n n 
C2 O5 BU3 sing 134 n n 
C2 C1 BU3 sing 135 n n 
C2 H2 BU3 sing 136 n n 
O5 HO5 BU3 sing 137 n n 
C1 H11 BU3 sing 138 n n 
C1 H12 BU3 sing 139 n n 
C1 H13 BU3 sing 140 n n 
#
_atom_sites.entry_id                     5D3S 
_atom_sites.fract_transf_matrix[1][1]    0.025329 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017304 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 579 A 1 201 1 579 L44 . 
C 3 DMS A 1 202 1 DMS DMS . 
D 4 BU3 A 1 203 1 BU3 BU3 . 
E 5 HOH A 1 301 116 HOH HOH . 
E 5 HOH A 2 302 63 HOH HOH . 
E 5 HOH A 3 303 71 HOH HOH . 
E 5 HOH A 4 304 97 HOH HOH . 
E 5 HOH A 5 305 107 HOH HOH . 
E 5 HOH A 6 306 78 HOH HOH . 
E 5 HOH A 7 307 20 HOH HOH . 
E 5 HOH A 8 308 102 HOH HOH . 
E 5 HOH A 9 309 105 HOH HOH . 
E 5 HOH A 10 310 49 HOH HOH . 
E 5 HOH A 11 311 30 HOH HOH . 
E 5 HOH A 12 312 48 HOH HOH . 
E 5 HOH A 13 313 57 HOH HOH . 
E 5 HOH A 14 314 32 HOH HOH . 
E 5 HOH A 15 315 11 HOH HOH . 
E 5 HOH A 16 316 54 HOH HOH . 
E 5 HOH A 17 317 35 HOH HOH . 
E 5 HOH A 18 318 69 HOH HOH . 
E 5 HOH A 19 319 98 HOH HOH . 
E 5 HOH A 20 320 19 HOH HOH . 
E 5 HOH A 21 321 46 HOH HOH . 
E 5 HOH A 22 322 31 HOH HOH . 
E 5 HOH A 23 323 110 HOH HOH . 
E 5 HOH A 24 324 38 HOH HOH . 
E 5 HOH A 25 325 1 HOH HOH . 
E 5 HOH A 26 326 13 HOH HOH . 
E 5 HOH A 27 327 21 HOH HOH . 
E 5 HOH A 28 328 42 HOH HOH . 
E 5 HOH A 29 329 4 HOH HOH . 
E 5 HOH A 30 330 16 HOH HOH . 
E 5 HOH A 31 331 118 HOH HOH . 
E 5 HOH A 32 332 3 HOH HOH . 
E 5 HOH A 33 333 65 HOH HOH . 
E 5 HOH A 34 334 59 HOH HOH . 
E 5 HOH A 35 335 10 HOH HOH . 
E 5 HOH A 36 336 56 HOH HOH . 
E 5 HOH A 37 337 24 HOH HOH . 
E 5 HOH A 38 338 75 HOH HOH . 
E 5 HOH A 39 339 12 HOH HOH . 
E 5 HOH A 40 340 37 HOH HOH . 
E 5 HOH A 41 341 114 HOH HOH . 
E 5 HOH A 42 342 108 HOH HOH . 
E 5 HOH A 43 343 86 HOH HOH . 
E 5 HOH A 44 344 103 HOH HOH . 
E 5 HOH A 45 345 26 HOH HOH . 
E 5 HOH A 46 346 18 HOH HOH . 
E 5 HOH A 47 347 76 HOH HOH . 
E 5 HOH A 48 348 14 HOH HOH . 
E 5 HOH A 49 349 64 HOH HOH . 
E 5 HOH A 50 350 52 HOH HOH . 
E 5 HOH A 51 351 109 HOH HOH . 
E 5 HOH A 52 352 58 HOH HOH . 
E 5 HOH A 53 353 41 HOH HOH . 
E 5 HOH A 54 354 9 HOH HOH . 
E 5 HOH A 55 355 6 HOH HOH . 
E 5 HOH A 56 356 39 HOH HOH . 
E 5 HOH A 57 357 29 HOH HOH . 
E 5 HOH A 58 358 85 HOH HOH . 
E 5 HOH A 59 359 22 HOH HOH . 
E 5 HOH A 60 360 99 HOH HOH . 
E 5 HOH A 61 361 45 HOH HOH . 
E 5 HOH A 62 362 43 HOH HOH . 
E 5 HOH A 63 363 60 HOH HOH . 
E 5 HOH A 64 364 82 HOH HOH . 
E 5 HOH A 65 365 67 HOH HOH . 
E 5 HOH A 66 366 88 HOH HOH . 
E 5 HOH A 67 367 36 HOH HOH . 
E 5 HOH A 68 368 101 HOH HOH . 
E 5 HOH A 69 369 120 HOH HOH . 
E 5 HOH A 70 370 104 HOH HOH . 
E 5 HOH A 71 371 25 HOH HOH . 
E 5 HOH A 72 372 53 HOH HOH . 
E 5 HOH A 73 373 111 HOH HOH . 
E 5 HOH A 74 374 92 HOH HOH . 
E 5 HOH A 75 375 51 HOH HOH . 
E 5 HOH A 76 376 44 HOH HOH . 
E 5 HOH A 77 377 55 HOH HOH . 
E 5 HOH A 78 378 79 HOH HOH . 
E 5 HOH A 79 379 47 HOH HOH . 
E 5 HOH A 80 380 2 HOH HOH . 
E 5 HOH A 81 381 40 HOH HOH . 
E 5 HOH A 82 382 115 HOH HOH . 
E 5 HOH A 83 383 119 HOH HOH . 
E 5 HOH A 84 384 66 HOH HOH . 
E 5 HOH A 85 385 27 HOH HOH . 
E 5 HOH A 86 386 7 HOH HOH . 
E 5 HOH A 87 387 33 HOH HOH . 
E 5 HOH A 88 388 113 HOH HOH . 
E 5 HOH A 89 389 81 HOH HOH . 
E 5 HOH A 90 390 87 HOH HOH . 
E 5 HOH A 91 391 95 HOH HOH . 
E 5 HOH A 92 392 73 HOH HOH . 
E 5 HOH A 93 393 74 HOH HOH . 
E 5 HOH A 94 394 80 HOH HOH . 
E 5 HOH A 95 395 34 HOH HOH . 
E 5 HOH A 96 396 96 HOH HOH . 
E 5 HOH A 97 397 17 HOH HOH . 
E 5 HOH A 98 398 77 HOH HOH . 
E 5 HOH A 99 399 23 HOH HOH . 
E 5 HOH A 100 400 5 HOH HOH . 
E 5 HOH A 101 401 61 HOH HOH . 
E 5 HOH A 102 402 68 HOH HOH . 
E 5 HOH A 103 403 100 HOH HOH . 
E 5 HOH A 104 404 62 HOH HOH . 
E 5 HOH A 105 405 50 HOH HOH . 
E 5 HOH A 106 406 15 HOH HOH . 
E 5 HOH A 107 407 83 HOH HOH . 
E 5 HOH A 108 408 84 HOH HOH . 
E 5 HOH A 109 409 94 HOH HOH . 
E 5 HOH A 110 410 91 HOH HOH . 
E 5 HOH A 111 411 106 HOH HOH . 
E 5 HOH A 112 412 8 HOH HOH . 
E 5 HOH A 113 413 90 HOH HOH . 
E 5 HOH A 114 414 28 HOH HOH . 
E 5 HOH A 115 415 93 HOH HOH . 
E 5 HOH A 116 416 89 HOH HOH . 
E 5 HOH A 117 417 70 HOH HOH . 
E 5 HOH A 118 418 112 HOH HOH . 
E 5 HOH A 119 419 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . D 4 13.437 -9.132 -1.082 1 32.3 ? O6 BU3 203 A 1 
HETATM 2 C C3 BU3 . . . D 4 13.338 -7.947 -1.894 1 30.25 ? C3 BU3 203 A 1 
HETATM 3 C C4 BU3 . . . D 4 12.466 -8.195 -3.115 1 29.28 ? C4 BU3 203 A 1 
HETATM 4 C C2 BU3 . . . D 4 14.734 -7.551 -2.348 1 30.23 ? C2 BU3 203 A 1 
HETATM 5 O O5 BU3 . . . D 4 15.29 -8.66 -3.059 1 26.72 ? O5 BU3 203 A 1 
HETATM 6 C C1 BU3 . . . D 4 15.626 -7.159 -1.172 1 30.94 ? C1 BU3 203 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#