data_5D3T # _model_server_result.job_id WTXd-QZOnDKQgwjM34CvsA _model_server_result.datetime_utc '2024-10-19 00:55:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5D3T # _exptl.entry_id 5D3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-acetyl-N-(3-carbamoylbenzyl)-3-ethyl-N,5-dimethyl-1H-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D3T _cell.length_a 38.44 _cell.length_b 42.73 _cell.length_c 79.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 97 A ILE 138 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.033 ? metalc ? metalc2 A O ASN 99 A ASN 140 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? # _chem_comp.formula 'C19 H23 N3 O3' _chem_comp.formula_weight 341.404 _chem_comp.id 56Y _chem_comp.mon_nstd_flag . _chem_comp.name 4-acetyl-N-(3-carbamoylbenzyl)-3-ethyl-N,5-dimethyl-1H-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N17 C15 56Y sing 1 n n O16 C15 56Y doub 2 n n C15 C10 56Y sing 3 n n C10 C9 56Y doub 4 n y C10 C12 56Y sing 5 n y C9 C6 56Y sing 6 n y C16 N10 56Y sing 7 n n C12 C13 56Y doub 8 n y C26 C5 56Y sing 9 n n C6 C11 56Y sing 10 n n C6 C14 56Y doub 11 n y C11 N10 56Y sing 12 n n N10 C8 56Y sing 13 n n N6 C5 56Y sing 14 n y N6 C7 56Y sing 15 n y C5 C4 56Y doub 16 n y C13 C14 56Y sing 17 n y C7 C8 56Y sing 18 n n C7 C3 56Y doub 19 n y C8 O9 56Y doub 20 n n C4 C27 56Y sing 21 n n C4 C3 56Y sing 22 n y O28 C27 56Y doub 23 n n C27 C29 56Y sing 24 n n C3 C2 56Y sing 25 n n C2 C1 56Y sing 26 n n C1 H1 56Y sing 27 n n C1 H2 56Y sing 28 n n C1 H3 56Y sing 29 n n C2 H4 56Y sing 30 n n C2 H5 56Y sing 31 n n C11 H6 56Y sing 32 n n C11 H7 56Y sing 33 n n C14 H8 56Y sing 34 n n C26 H9 56Y sing 35 n n C26 H10 56Y sing 36 n n C26 H11 56Y sing 37 n n C29 H12 56Y sing 38 n n C29 H13 56Y sing 39 n n C29 H14 56Y sing 40 n n N6 H15 56Y sing 41 n n C9 H16 56Y sing 42 n n C12 H17 56Y sing 43 n n C13 H18 56Y sing 44 n n N17 H19 56Y sing 45 n n N17 H20 56Y sing 46 n n C16 H21 56Y sing 47 n n C16 H22 56Y sing 48 n n C16 H23 56Y sing 49 n n # _atom_sites.entry_id 5D3T _atom_sites.fract_transf_matrix[1][1] 0.026015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 56Y A 1 201 1 56Y L47 . C 3 NA A 1 202 2 NA NA . D 4 EDO A 1 203 1 EDO EDO . E 5 HOH A 1 301 135 HOH HOH . E 5 HOH A 2 302 113 HOH HOH . E 5 HOH A 3 303 88 HOH HOH . E 5 HOH A 4 304 24 HOH HOH . E 5 HOH A 5 305 66 HOH HOH . E 5 HOH A 6 306 175 HOH HOH . E 5 HOH A 7 307 140 HOH HOH . E 5 HOH A 8 308 173 HOH HOH . E 5 HOH A 9 309 95 HOH HOH . E 5 HOH A 10 310 64 HOH HOH . E 5 HOH A 11 311 110 HOH HOH . E 5 HOH A 12 312 33 HOH HOH . E 5 HOH A 13 313 96 HOH HOH . E 5 HOH A 14 314 91 HOH HOH . E 5 HOH A 15 315 70 HOH HOH . E 5 HOH A 16 316 181 HOH HOH . E 5 HOH A 17 317 97 HOH HOH . E 5 HOH A 18 318 143 HOH HOH . E 5 HOH A 19 319 40 HOH HOH . E 5 HOH A 20 320 9 HOH HOH . E 5 HOH A 21 321 159 HOH HOH . E 5 HOH A 22 322 92 HOH HOH . E 5 HOH A 23 323 112 HOH HOH . E 5 HOH A 24 324 124 HOH HOH . E 5 HOH A 25 325 138 HOH HOH . E 5 HOH A 26 326 130 HOH HOH . E 5 HOH A 27 327 75 HOH HOH . E 5 HOH A 28 328 141 HOH HOH . E 5 HOH A 29 329 85 HOH HOH . E 5 HOH A 30 330 36 HOH HOH . E 5 HOH A 31 331 87 HOH HOH . E 5 HOH A 32 332 14 HOH HOH . E 5 HOH A 33 333 2 HOH HOH . E 5 HOH A 34 334 12 HOH HOH . E 5 HOH A 35 335 164 HOH HOH . E 5 HOH A 36 336 41 HOH HOH . E 5 HOH A 37 337 57 HOH HOH . E 5 HOH A 38 338 194 HOH HOH . E 5 HOH A 39 339 10 HOH HOH . E 5 HOH A 40 340 43 HOH HOH . E 5 HOH A 41 341 39 HOH HOH . E 5 HOH A 42 342 22 HOH HOH . E 5 HOH A 43 343 170 HOH HOH . E 5 HOH A 44 344 42 HOH HOH . E 5 HOH A 45 345 136 HOH HOH . E 5 HOH A 46 346 44 HOH HOH . E 5 HOH A 47 347 77 HOH HOH . E 5 HOH A 48 348 189 HOH HOH . E 5 HOH A 49 349 90 HOH HOH . E 5 HOH A 50 350 38 HOH HOH . E 5 HOH A 51 351 78 HOH HOH . E 5 HOH A 52 352 99 HOH HOH . E 5 HOH A 53 353 151 HOH HOH . E 5 HOH A 54 354 4 HOH HOH . E 5 HOH A 55 355 5 HOH HOH . E 5 HOH A 56 356 174 HOH HOH . E 5 HOH A 57 357 62 HOH HOH . E 5 HOH A 58 358 21 HOH HOH . E 5 HOH A 59 359 29 HOH HOH . E 5 HOH A 60 360 183 HOH HOH . E 5 HOH A 61 361 68 HOH HOH . E 5 HOH A 62 362 84 HOH HOH . E 5 HOH A 63 363 107 HOH HOH . E 5 HOH A 64 364 69 HOH HOH . E 5 HOH A 65 365 79 HOH HOH . E 5 HOH A 66 366 108 HOH HOH . E 5 HOH A 67 367 191 HOH HOH . E 5 HOH A 68 368 150 HOH HOH . E 5 HOH A 69 369 15 HOH HOH . E 5 HOH A 70 370 51 HOH HOH . E 5 HOH A 71 371 16 HOH HOH . E 5 HOH A 72 372 74 HOH HOH . E 5 HOH A 73 373 23 HOH HOH . E 5 HOH A 74 374 65 HOH HOH . E 5 HOH A 75 375 28 HOH HOH . E 5 HOH A 76 376 128 HOH HOH . E 5 HOH A 77 377 54 HOH HOH . E 5 HOH A 78 378 118 HOH HOH . E 5 HOH A 79 379 61 HOH HOH . E 5 HOH A 80 380 67 HOH HOH . E 5 HOH A 81 381 20 HOH HOH . E 5 HOH A 82 382 111 HOH HOH . E 5 HOH A 83 383 26 HOH HOH . E 5 HOH A 84 384 17 HOH HOH . E 5 HOH A 85 385 146 HOH HOH . E 5 HOH A 86 386 11 HOH HOH . E 5 HOH A 87 387 193 HOH HOH . E 5 HOH A 88 388 49 HOH HOH . E 5 HOH A 89 389 132 HOH HOH . E 5 HOH A 90 390 165 HOH HOH . E 5 HOH A 91 391 188 HOH HOH . E 5 HOH A 92 392 56 HOH HOH . E 5 HOH A 93 393 55 HOH HOH . E 5 HOH A 94 394 63 HOH HOH . E 5 HOH A 95 395 114 HOH HOH . E 5 HOH A 96 396 27 HOH HOH . E 5 HOH A 97 397 13 HOH HOH . E 5 HOH A 98 398 18 HOH HOH . E 5 HOH A 99 399 8 HOH HOH . E 5 HOH A 100 400 45 HOH HOH . E 5 HOH A 101 401 34 HOH HOH . E 5 HOH A 102 402 3 HOH HOH . E 5 HOH A 103 403 122 HOH HOH . E 5 HOH A 104 404 153 HOH HOH . E 5 HOH A 105 405 19 HOH HOH . E 5 HOH A 106 406 7 HOH HOH . E 5 HOH A 107 407 171 HOH HOH . E 5 HOH A 108 408 156 HOH HOH . E 5 HOH A 109 409 50 HOH HOH . E 5 HOH A 110 410 1 HOH HOH . E 5 HOH A 111 411 47 HOH HOH . E 5 HOH A 112 412 144 HOH HOH . E 5 HOH A 113 413 152 HOH HOH . E 5 HOH A 114 414 32 HOH HOH . E 5 HOH A 115 415 46 HOH HOH . E 5 HOH A 116 416 103 HOH HOH . E 5 HOH A 117 417 60 HOH HOH . E 5 HOH A 118 418 157 HOH HOH . E 5 HOH A 119 419 58 HOH HOH . E 5 HOH A 120 420 134 HOH HOH . E 5 HOH A 121 421 123 HOH HOH . E 5 HOH A 122 422 48 HOH HOH . E 5 HOH A 123 423 52 HOH HOH . E 5 HOH A 124 424 89 HOH HOH . E 5 HOH A 125 425 133 HOH HOH . E 5 HOH A 126 426 30 HOH HOH . E 5 HOH A 127 427 82 HOH HOH . E 5 HOH A 128 428 126 HOH HOH . E 5 HOH A 129 429 195 HOH HOH . E 5 HOH A 130 430 76 HOH HOH . E 5 HOH A 131 431 129 HOH HOH . E 5 HOH A 132 432 59 HOH HOH . E 5 HOH A 133 433 100 HOH HOH . E 5 HOH A 134 434 81 HOH HOH . E 5 HOH A 135 435 168 HOH HOH . E 5 HOH A 136 436 53 HOH HOH . E 5 HOH A 137 437 182 HOH HOH . E 5 HOH A 138 438 119 HOH HOH . E 5 HOH A 139 439 25 HOH HOH . E 5 HOH A 140 440 197 HOH HOH . E 5 HOH A 141 441 6 HOH HOH . E 5 HOH A 142 442 196 HOH HOH . E 5 HOH A 143 443 72 HOH HOH . E 5 HOH A 144 444 35 HOH HOH . E 5 HOH A 145 445 163 HOH HOH . E 5 HOH A 146 446 176 HOH HOH . E 5 HOH A 147 447 160 HOH HOH . E 5 HOH A 148 448 179 HOH HOH . E 5 HOH A 149 449 169 HOH HOH . E 5 HOH A 150 450 139 HOH HOH . E 5 HOH A 151 451 162 HOH HOH . E 5 HOH A 152 452 120 HOH HOH . E 5 HOH A 153 453 167 HOH HOH . E 5 HOH A 154 454 149 HOH HOH . E 5 HOH A 155 455 137 HOH HOH . E 5 HOH A 156 456 155 HOH HOH . E 5 HOH A 157 457 158 HOH HOH . E 5 HOH A 158 458 86 HOH HOH . E 5 HOH A 159 459 185 HOH HOH . E 5 HOH A 160 460 161 HOH HOH . E 5 HOH A 161 461 93 HOH HOH . E 5 HOH A 162 462 117 HOH HOH . E 5 HOH A 163 463 142 HOH HOH . E 5 HOH A 164 464 131 HOH HOH . E 5 HOH A 165 465 177 HOH HOH . E 5 HOH A 166 466 83 HOH HOH . E 5 HOH A 167 467 102 HOH HOH . E 5 HOH A 168 468 178 HOH HOH . E 5 HOH A 169 469 127 HOH HOH . E 5 HOH A 170 470 98 HOH HOH . E 5 HOH A 171 471 105 HOH HOH . E 5 HOH A 172 472 109 HOH HOH . E 5 HOH A 173 473 154 HOH HOH . E 5 HOH A 174 474 37 HOH HOH . E 5 HOH A 175 475 101 HOH HOH . E 5 HOH A 176 476 190 HOH HOH . E 5 HOH A 177 477 94 HOH HOH . E 5 HOH A 178 478 148 HOH HOH . E 5 HOH A 179 479 172 HOH HOH . E 5 HOH A 180 480 145 HOH HOH . E 5 HOH A 181 481 71 HOH HOH . E 5 HOH A 182 482 147 HOH HOH . E 5 HOH A 183 483 104 HOH HOH . E 5 HOH A 184 484 73 HOH HOH . E 5 HOH A 185 485 187 HOH HOH . E 5 HOH A 186 486 31 HOH HOH . E 5 HOH A 187 487 121 HOH HOH . E 5 HOH A 188 488 106 HOH HOH . E 5 HOH A 189 489 184 HOH HOH . E 5 HOH A 190 490 125 HOH HOH . E 5 HOH A 191 491 192 HOH HOH . E 5 HOH A 192 492 180 HOH HOH . E 5 HOH A 193 493 80 HOH HOH . E 5 HOH A 194 494 115 HOH HOH . E 5 HOH A 195 495 166 HOH HOH . E 5 HOH A 196 496 116 HOH HOH . E 5 HOH A 197 497 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 56Y . . . B 2 11.304 6.021 2.518 1 21.8 ? C1 56Y 201 A 1 HETATM 2 C C2 56Y . . . B 2 11.219 6.665 1.142 1 20.81 ? C2 56Y 201 A 1 HETATM 3 C C3 56Y . . . B 2 11.13 5.578 0.091 1 19.76 ? C3 56Y 201 A 1 HETATM 4 C C4 56Y . . . B 2 12.102 4.711 -0.396 1 18.88 ? C4 56Y 201 A 1 HETATM 5 C C5 56Y . . . B 2 11.503 3.807 -1.393 1 19.77 ? C5 56Y 201 A 1 HETATM 6 C C6 56Y . . . B 2 6.211 7.91 -1.827 1 25.11 ? C6 56Y 201 A 1 HETATM 7 C C11 56Y . . . B 2 6.439 6.432 -1.621 1 23.51 ? C11 56Y 201 A 1 HETATM 8 C C14 56Y . . . B 2 6.295 8.813 -0.765 1 27.09 ? C14 56Y 201 A 1 HETATM 9 C C15 56Y . . . B 2 5.433 10.199 -4.754 1 27.79 ? C15 56Y 201 A 1 HETATM 10 C C26 56Y . . . B 2 12.176 2.729 -2.198 1 19.14 ? C26 56Y 201 A 1 HETATM 11 C C27 56Y . . . B 2 13.539 4.64 -0.068 1 18.51 ? C27 56Y 201 A 1 HETATM 12 C C29 56Y . . . B 2 14.2 5.912 0.399 1 18.74 ? C29 56Y 201 A 1 HETATM 13 C C7 56Y . . . B 2 9.904 5.151 -0.64 1 20.55 ? C7 56Y 201 A 1 HETATM 14 C C8 56Y . . . B 2 8.559 5.818 -0.482 1 21.32 ? C8 56Y 201 A 1 HETATM 15 N N6 56Y . . . B 2 10.199 4.135 -1.482 1 20.27 ? N6 56Y 201 A 1 HETATM 16 N N10 56Y . . . B 2 7.883 6.145 -1.608 1 22.06 ? N10 56Y 201 A 1 HETATM 17 O O28 56Y . . . B 2 14.132 3.585 -0.227 1 16.7 ? O28 56Y 201 A 1 HETATM 18 O O9 56Y . . . B 2 8.094 6.056 0.615 1 21.88 ? O9 56Y 201 A 1 HETATM 19 C C9 56Y . . . B 2 5.93 8.374 -3.099 1 25.9 ? C9 56Y 201 A 1 HETATM 20 C C10 56Y . . . B 2 5.718 9.726 -3.346 1 26.79 ? C10 56Y 201 A 1 HETATM 21 C C12 56Y . . . B 2 5.812 10.628 -2.288 1 27.12 ? C12 56Y 201 A 1 HETATM 22 C C13 56Y . . . B 2 6.097 10.169 -1.002 1 26.18 ? C13 56Y 201 A 1 HETATM 23 O O16 56Y . . . B 2 4.804 11.236 -4.991 1 29.27 ? O16 56Y 201 A 1 HETATM 24 N N17 56Y . . . B 2 5.936 9.428 -5.827 1 25.59 ? N17 56Y 201 A 1 HETATM 25 C C16 56Y . . . B 2 8.523 6.263 -2.922 1 22.04 ? C16 56Y 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #