data_5D3V
#
_model_server_result.job_id            ZD-DAV0l5LkBzikyfZO46A 
_model_server_result.datetime_utc      '2025-02-27 11:22:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d3v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5D3V 
#
_exptl.entry_id    5D3V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5D3V 
_cell.length_a            54.08 
_cell.length_b            72.424 
_cell.length_c            82.526 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D3V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 83 n n 
CAC OA1 FLC doub 84 n n 
CAC OA2 FLC sing 85 n n 
CA CB FLC sing 86 n n 
CA HA1 FLC sing 87 n n 
CA HA2 FLC sing 88 n n 
CB CBC FLC sing 89 n n 
CB CG FLC sing 90 n n 
CB OHB FLC sing 91 n n 
CBC OB1 FLC doub 92 n n 
CBC OB2 FLC sing 93 n n 
CG CGC FLC sing 94 n n 
CG HG1 FLC sing 95 n n 
CG HG2 FLC sing 96 n n 
CGC OG1 FLC doub 97 n n 
CGC OG2 FLC sing 98 n n 
OHB HOB FLC sing 99 n n 
#
_atom_sites.entry_id                     5D3V 
_atom_sites.fract_transf_matrix[1][1]    0.018491 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013808 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FLC A 1 501 1 FLC FLC . 
D 3 HOH A 1 601 96 HOH HOH . 
D 3 HOH A 2 602 103 HOH HOH . 
D 3 HOH A 3 603 20 HOH HOH . 
D 3 HOH A 4 604 47 HOH HOH . 
D 3 HOH A 5 605 164 HOH HOH . 
D 3 HOH A 6 606 85 HOH HOH . 
D 3 HOH A 7 607 184 HOH HOH . 
D 3 HOH A 8 608 44 HOH HOH . 
D 3 HOH A 9 609 13 HOH HOH . 
D 3 HOH A 10 610 6 HOH HOH . 
D 3 HOH A 11 611 26 HOH HOH . 
D 3 HOH A 12 612 2 HOH HOH . 
D 3 HOH A 13 613 21 HOH HOH . 
D 3 HOH A 14 614 108 HOH HOH . 
D 3 HOH A 15 615 54 HOH HOH . 
D 3 HOH A 16 616 143 HOH HOH . 
D 3 HOH A 17 617 9 HOH HOH . 
D 3 HOH A 18 618 27 HOH HOH . 
D 3 HOH A 19 619 93 HOH HOH . 
D 3 HOH A 20 620 15 HOH HOH . 
D 3 HOH A 21 621 199 HOH HOH . 
D 3 HOH A 22 622 87 HOH HOH . 
D 3 HOH A 23 623 99 HOH HOH . 
D 3 HOH A 24 624 125 HOH HOH . 
D 3 HOH A 25 625 121 HOH HOH . 
D 3 HOH A 26 626 43 HOH HOH . 
D 3 HOH A 27 627 28 HOH HOH . 
D 3 HOH A 28 628 182 HOH HOH . 
D 3 HOH A 29 629 193 HOH HOH . 
D 3 HOH A 30 630 10 HOH HOH . 
D 3 HOH A 31 631 84 HOH HOH . 
D 3 HOH A 32 632 86 HOH HOH . 
D 3 HOH A 33 633 131 HOH HOH . 
D 3 HOH A 34 634 95 HOH HOH . 
D 3 HOH A 35 635 109 HOH HOH . 
D 3 HOH A 36 636 5 HOH HOH . 
D 3 HOH A 37 637 42 HOH HOH . 
D 3 HOH A 38 638 39 HOH HOH . 
D 3 HOH A 39 639 130 HOH HOH . 
D 3 HOH A 40 640 68 HOH HOH . 
D 3 HOH A 41 641 30 HOH HOH . 
D 3 HOH A 42 642 214 HOH HOH . 
D 3 HOH A 43 643 52 HOH HOH . 
D 3 HOH A 44 644 59 HOH HOH . 
D 3 HOH A 45 645 187 HOH HOH . 
D 3 HOH A 46 646 169 HOH HOH . 
D 3 HOH A 47 647 210 HOH HOH . 
D 3 HOH A 48 648 206 HOH HOH . 
D 3 HOH A 49 649 45 HOH HOH . 
D 3 HOH A 50 650 197 HOH HOH . 
D 3 HOH A 51 651 135 HOH HOH . 
D 3 HOH A 52 652 7 HOH HOH . 
D 3 HOH A 53 653 116 HOH HOH . 
D 3 HOH A 54 654 176 HOH HOH . 
D 3 HOH A 55 655 1 HOH HOH . 
D 3 HOH A 56 656 53 HOH HOH . 
D 3 HOH A 57 657 171 HOH HOH . 
D 3 HOH A 58 658 76 HOH HOH . 
D 3 HOH A 59 659 205 HOH HOH . 
D 3 HOH A 60 660 106 HOH HOH . 
D 3 HOH A 61 661 62 HOH HOH . 
D 3 HOH A 62 662 120 HOH HOH . 
D 3 HOH A 63 663 107 HOH HOH . 
D 3 HOH A 64 664 41 HOH HOH . 
D 3 HOH A 65 665 129 HOH HOH . 
D 3 HOH A 66 666 149 HOH HOH . 
D 3 HOH A 67 667 81 HOH HOH . 
D 3 HOH A 68 668 67 HOH HOH . 
D 3 HOH A 69 669 172 HOH HOH . 
D 3 HOH A 70 670 136 HOH HOH . 
D 3 HOH A 71 671 80 HOH HOH . 
D 3 HOH A 72 672 117 HOH HOH . 
D 3 HOH A 73 673 3 HOH HOH . 
D 3 HOH A 74 674 189 HOH HOH . 
D 3 HOH A 75 675 198 HOH HOH . 
D 3 HOH A 76 676 104 HOH HOH . 
D 3 HOH A 77 677 33 HOH HOH . 
D 3 HOH A 78 678 153 HOH HOH . 
D 3 HOH A 79 679 34 HOH HOH . 
D 3 HOH A 80 680 91 HOH HOH . 
D 3 HOH A 81 681 186 HOH HOH . 
D 3 HOH A 82 682 37 HOH HOH . 
D 3 HOH A 83 683 204 HOH HOH . 
D 3 HOH A 84 684 11 HOH HOH . 
D 3 HOH A 85 685 127 HOH HOH . 
D 3 HOH A 86 686 216 HOH HOH . 
D 3 HOH A 87 687 56 HOH HOH . 
D 3 HOH A 88 688 16 HOH HOH . 
D 3 HOH A 89 689 185 HOH HOH . 
D 3 HOH A 90 690 57 HOH HOH . 
D 3 HOH A 91 691 138 HOH HOH . 
D 3 HOH A 92 692 196 HOH HOH . 
D 3 HOH A 93 693 51 HOH HOH . 
D 3 HOH A 94 694 166 HOH HOH . 
D 3 HOH A 95 695 220 HOH HOH . 
D 3 HOH A 96 696 112 HOH HOH . 
D 3 HOH A 97 697 175 HOH HOH . 
D 3 HOH A 98 698 211 HOH HOH . 
D 3 HOH A 99 699 115 HOH HOH . 
D 3 HOH A 100 700 159 HOH HOH . 
D 3 HOH A 101 701 213 HOH HOH . 
D 3 HOH A 102 702 178 HOH HOH . 
D 3 HOH A 103 703 160 HOH HOH . 
D 3 HOH A 104 704 215 HOH HOH . 
D 3 HOH A 105 705 167 HOH HOH . 
D 3 HOH A 106 706 190 HOH HOH . 
D 3 HOH A 107 707 150 HOH HOH . 
D 3 HOH A 108 708 97 HOH HOH . 
D 3 HOH A 109 709 118 HOH HOH . 
D 3 HOH A 110 710 18 HOH HOH . 
D 3 HOH A 111 711 180 HOH HOH . 
D 3 HOH A 112 712 162 HOH HOH . 
D 3 HOH A 113 713 147 HOH HOH . 
D 3 HOH A 114 714 212 HOH HOH . 
D 3 HOH A 115 715 148 HOH HOH . 
D 3 HOH A 116 716 151 HOH HOH . 
D 3 HOH A 117 717 8 HOH HOH . 
D 3 HOH A 118 718 124 HOH HOH . 
D 3 HOH A 119 719 98 HOH HOH . 
D 3 HOH A 120 720 152 HOH HOH . 
D 3 HOH A 121 721 32 HOH HOH . 
D 3 HOH A 122 722 94 HOH HOH . 
D 3 HOH A 123 723 163 HOH HOH . 
D 3 HOH A 124 724 170 HOH HOH . 
E 3 HOH B 1 501 49 HOH HOH . 
E 3 HOH B 2 502 101 HOH HOH . 
E 3 HOH B 3 503 64 HOH HOH . 
E 3 HOH B 4 504 74 HOH HOH . 
E 3 HOH B 5 505 201 HOH HOH . 
E 3 HOH B 6 506 92 HOH HOH . 
E 3 HOH B 7 507 123 HOH HOH . 
E 3 HOH B 8 508 65 HOH HOH . 
E 3 HOH B 9 509 157 HOH HOH . 
E 3 HOH B 10 510 154 HOH HOH . 
E 3 HOH B 11 511 12 HOH HOH . 
E 3 HOH B 12 512 133 HOH HOH . 
E 3 HOH B 13 513 179 HOH HOH . 
E 3 HOH B 14 514 132 HOH HOH . 
E 3 HOH B 15 515 113 HOH HOH . 
E 3 HOH B 16 516 173 HOH HOH . 
E 3 HOH B 17 517 128 HOH HOH . 
E 3 HOH B 18 518 110 HOH HOH . 
E 3 HOH B 19 519 38 HOH HOH . 
E 3 HOH B 20 520 63 HOH HOH . 
E 3 HOH B 21 521 192 HOH HOH . 
E 3 HOH B 22 522 4 HOH HOH . 
E 3 HOH B 23 523 77 HOH HOH . 
E 3 HOH B 24 524 105 HOH HOH . 
E 3 HOH B 25 525 89 HOH HOH . 
E 3 HOH B 26 526 140 HOH HOH . 
E 3 HOH B 27 527 14 HOH HOH . 
E 3 HOH B 28 528 73 HOH HOH . 
E 3 HOH B 29 529 25 HOH HOH . 
E 3 HOH B 30 530 72 HOH HOH . 
E 3 HOH B 31 531 22 HOH HOH . 
E 3 HOH B 32 532 71 HOH HOH . 
E 3 HOH B 33 533 17 HOH HOH . 
E 3 HOH B 34 534 202 HOH HOH . 
E 3 HOH B 35 535 183 HOH HOH . 
E 3 HOH B 36 536 31 HOH HOH . 
E 3 HOH B 37 537 100 HOH HOH . 
E 3 HOH B 38 538 60 HOH HOH . 
E 3 HOH B 39 539 139 HOH HOH . 
E 3 HOH B 40 540 188 HOH HOH . 
E 3 HOH B 41 541 174 HOH HOH . 
E 3 HOH B 42 542 24 HOH HOH . 
E 3 HOH B 43 543 145 HOH HOH . 
E 3 HOH B 44 544 79 HOH HOH . 
E 3 HOH B 45 545 146 HOH HOH . 
E 3 HOH B 46 546 111 HOH HOH . 
E 3 HOH B 47 547 126 HOH HOH . 
E 3 HOH B 48 548 78 HOH HOH . 
E 3 HOH B 49 549 156 HOH HOH . 
E 3 HOH B 50 550 141 HOH HOH . 
E 3 HOH B 51 551 191 HOH HOH . 
E 3 HOH B 52 552 40 HOH HOH . 
E 3 HOH B 53 553 35 HOH HOH . 
E 3 HOH B 54 554 48 HOH HOH . 
E 3 HOH B 55 555 142 HOH HOH . 
E 3 HOH B 56 556 155 HOH HOH . 
E 3 HOH B 57 557 75 HOH HOH . 
E 3 HOH B 58 558 134 HOH HOH . 
E 3 HOH B 59 559 69 HOH HOH . 
E 3 HOH B 60 560 70 HOH HOH . 
E 3 HOH B 61 561 82 HOH HOH . 
E 3 HOH B 62 562 83 HOH HOH . 
E 3 HOH B 63 563 165 HOH HOH . 
E 3 HOH B 64 564 122 HOH HOH . 
E 3 HOH B 65 565 55 HOH HOH . 
E 3 HOH B 66 566 200 HOH HOH . 
E 3 HOH B 67 567 19 HOH HOH . 
E 3 HOH B 68 568 181 HOH HOH . 
E 3 HOH B 69 569 203 HOH HOH . 
E 3 HOH B 70 570 114 HOH HOH . 
E 3 HOH B 71 571 29 HOH HOH . 
E 3 HOH B 72 572 46 HOH HOH . 
E 3 HOH B 73 573 58 HOH HOH . 
E 3 HOH B 74 574 90 HOH HOH . 
E 3 HOH B 75 575 194 HOH HOH . 
E 3 HOH B 76 576 23 HOH HOH . 
E 3 HOH B 77 577 88 HOH HOH . 
E 3 HOH B 78 578 119 HOH HOH . 
E 3 HOH B 79 579 66 HOH HOH . 
E 3 HOH B 80 580 50 HOH HOH . 
E 3 HOH B 81 581 219 HOH HOH . 
E 3 HOH B 82 582 168 HOH HOH . 
E 3 HOH B 83 583 144 HOH HOH . 
E 3 HOH B 84 584 222 HOH HOH . 
E 3 HOH B 85 585 218 HOH HOH . 
E 3 HOH B 86 586 195 HOH HOH . 
E 3 HOH B 87 587 36 HOH HOH . 
E 3 HOH B 88 588 61 HOH HOH . 
E 3 HOH B 89 589 102 HOH HOH . 
E 3 HOH B 90 590 207 HOH HOH . 
E 3 HOH B 91 591 137 HOH HOH . 
E 3 HOH B 92 592 177 HOH HOH . 
E 3 HOH B 93 593 158 HOH HOH . 
E 3 HOH B 94 594 217 HOH HOH . 
E 3 HOH B 95 595 209 HOH HOH . 
E 3 HOH B 96 596 221 HOH HOH . 
E 3 HOH B 97 597 161 HOH HOH . 
E 3 HOH B 98 598 208 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . C 2 -8.203 30.239 45.738 1 53.71 ? CAC FLC 501 A 1 
HETATM 2 C CA FLC . . . C 2 -7.654 29.049 44.979 1 46.06 ? CA FLC 501 A 1 
HETATM 3 C CB FLC . . . C 2 -6.42 29.471 44.209 1 58.41 ? CB FLC 501 A 1 
HETATM 4 C CBC FLC . . . C 2 -5.507 28.273 44.037 1 63.2 ? CBC FLC 501 A 1 
HETATM 5 C CG FLC . . . C 2 -6.843 30.001 42.848 1 34.73 ? CG FLC 501 A 1 
HETATM 6 C CGC FLC . . . C 2 -5.665 30.635 42.141 1 24.48 ? CGC FLC 501 A 1 
HETATM 7 O OA1 FLC . . . C 2 -8.57 31.277 45.119 1 44.73 ? OA1 FLC 501 A 1 
HETATM 8 O OA2 FLC . . . C 2 -8.289 30.186 46.994 1 44.7 ? OA2 FLC 501 A 1 
HETATM 9 O OB1 FLC . . . C 2 -5.903 27.275 43.376 1 42.28 ? OB1 FLC 501 A 1 
HETATM 10 O OB2 FLC . . . C 2 -4.351 28.278 44.545 1 50.53 ? OB2 FLC 501 A 1 
HETATM 11 O OG1 FLC . . . C 2 -4.758 29.906 41.673 1 25.88 ? OG1 FLC 501 A 1 
HETATM 12 O OG2 FLC . . . C 2 -5.59 31.887 42.014 1 20.72 ? OG2 FLC 501 A 1 
HETATM 13 O OHB FLC . . . C 2 -5.737 30.476 44.926 1 36.64 ? OHB FLC 501 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#