data_5D3X # _model_server_result.job_id ovtlFdx5bvX6BqO6uF6iVg _model_server_result.datetime_utc '2024-11-29 13:26:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5D3X # _exptl.entry_id 5D3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 500.075 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D3X _cell.length_a 53.742 _cell.length_b 72.179 _cell.length_c 81.995 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H16 O18 P4' _chem_comp.formula_weight 500.075 _chem_comp.id 4IP _chem_comp.mon_nstd_flag . _chem_comp.name INOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 4IP sing 1 n n C1 C2 4IP sing 2 n n C1 C6 4IP sing 3 n n C1 H1 4IP sing 4 n n O1 P1 4IP sing 5 n n C2 O2 4IP sing 6 n n C2 C3 4IP sing 7 n n C2 H2 4IP sing 8 n n O2 HO2 4IP sing 9 n n C3 O3 4IP sing 10 n n C3 C4 4IP sing 11 n n C3 H3 4IP sing 12 n n O3 P3 4IP sing 13 n n C4 O4 4IP sing 14 n n C4 C5 4IP sing 15 n n C4 H4 4IP sing 16 n n O4 P4 4IP sing 17 n n C5 O5 4IP sing 18 n n C5 C6 4IP sing 19 n n C5 H5 4IP sing 20 n n O5 P5 4IP sing 21 n n C6 O6 4IP sing 22 n n C6 H6 4IP sing 23 n n O6 HO6 4IP sing 24 n n P1 O1P 4IP doub 25 n n P1 O2P 4IP sing 26 n n P1 O3P 4IP sing 27 n n O2P HO2P 4IP sing 28 n n O3P HO3P 4IP sing 29 n n P3 O4P 4IP doub 30 n n P3 O5P 4IP sing 31 n n P3 O6P 4IP sing 32 n n O5P HO5P 4IP sing 33 n n O6P HO6P 4IP sing 34 n n P4 O7P 4IP sing 35 n n P4 O8P 4IP sing 36 n n P4 O9P 4IP doub 37 n n O7P HO7P 4IP sing 38 n n O8P HO8P 4IP sing 39 n n P5 OPF 4IP sing 40 n n P5 OPG 4IP doub 41 n n P5 OPH 4IP sing 42 n n OPF HOP1 4IP sing 43 n n OPH HOP3 4IP sing 44 n n # _atom_sites.entry_id 5D3X _atom_sites.fract_transf_matrix[1][1] 0.018607 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4IP A 1 501 1 4IP 4IP . D 2 4IP B 1 501 2 4IP 4IP . E 3 HOH A 1 601 154 HOH HOH . E 3 HOH A 2 602 86 HOH HOH . E 3 HOH A 3 603 98 HOH HOH . E 3 HOH A 4 604 82 HOH HOH . E 3 HOH A 5 605 222 HOH HOH . E 3 HOH A 6 606 193 HOH HOH . E 3 HOH A 7 607 214 HOH HOH . E 3 HOH A 8 608 41 HOH HOH . E 3 HOH A 9 609 151 HOH HOH . E 3 HOH A 10 610 165 HOH HOH . E 3 HOH A 11 611 131 HOH HOH . E 3 HOH A 12 612 5 HOH HOH . E 3 HOH A 13 613 95 HOH HOH . E 3 HOH A 14 614 77 HOH HOH . E 3 HOH A 15 615 106 HOH HOH . E 3 HOH A 16 616 45 HOH HOH . E 3 HOH A 17 617 121 HOH HOH . E 3 HOH A 18 618 130 HOH HOH . E 3 HOH A 19 619 153 HOH HOH . E 3 HOH A 20 620 20 HOH HOH . E 3 HOH A 21 621 51 HOH HOH . E 3 HOH A 22 622 164 HOH HOH . E 3 HOH A 23 623 30 HOH HOH . E 3 HOH A 24 624 150 HOH HOH . E 3 HOH A 25 625 79 HOH HOH . E 3 HOH A 26 626 152 HOH HOH . E 3 HOH A 27 627 217 HOH HOH . E 3 HOH A 28 628 49 HOH HOH . E 3 HOH A 29 629 162 HOH HOH . E 3 HOH A 30 630 133 HOH HOH . E 3 HOH A 31 631 139 HOH HOH . E 3 HOH A 32 632 80 HOH HOH . E 3 HOH A 33 633 109 HOH HOH . E 3 HOH A 34 634 221 HOH HOH . E 3 HOH A 35 635 36 HOH HOH . E 3 HOH A 36 636 21 HOH HOH . E 3 HOH A 37 637 10 HOH HOH . E 3 HOH A 38 638 163 HOH HOH . E 3 HOH A 39 639 23 HOH HOH . E 3 HOH A 40 640 58 HOH HOH . E 3 HOH A 41 641 72 HOH HOH . E 3 HOH A 42 642 141 HOH HOH . E 3 HOH A 43 643 7 HOH HOH . E 3 HOH A 44 644 76 HOH HOH . E 3 HOH A 45 645 70 HOH HOH . E 3 HOH A 46 646 134 HOH HOH . E 3 HOH A 47 647 38 HOH HOH . E 3 HOH A 48 648 24 HOH HOH . E 3 HOH A 49 649 123 HOH HOH . E 3 HOH A 50 650 71 HOH HOH . E 3 HOH A 51 651 155 HOH HOH . E 3 HOH A 52 652 63 HOH HOH . E 3 HOH A 53 653 42 HOH HOH . E 3 HOH A 54 654 170 HOH HOH . E 3 HOH A 55 655 87 HOH HOH . E 3 HOH A 56 656 28 HOH HOH . E 3 HOH A 57 657 34 HOH HOH . E 3 HOH A 58 658 137 HOH HOH . E 3 HOH A 59 659 122 HOH HOH . E 3 HOH A 60 660 173 HOH HOH . E 3 HOH A 61 661 169 HOH HOH . E 3 HOH A 62 662 43 HOH HOH . E 3 HOH A 63 663 138 HOH HOH . E 3 HOH A 64 664 31 HOH HOH . E 3 HOH A 65 665 22 HOH HOH . E 3 HOH A 66 666 11 HOH HOH . E 3 HOH A 67 667 35 HOH HOH . E 3 HOH A 68 668 136 HOH HOH . E 3 HOH A 69 669 124 HOH HOH . E 3 HOH A 70 670 119 HOH HOH . E 3 HOH A 71 671 6 HOH HOH . E 3 HOH A 72 672 148 HOH HOH . E 3 HOH A 73 673 84 HOH HOH . E 3 HOH A 74 674 127 HOH HOH . E 3 HOH A 75 675 100 HOH HOH . E 3 HOH A 76 676 27 HOH HOH . E 3 HOH A 77 677 112 HOH HOH . E 3 HOH A 78 678 102 HOH HOH . E 3 HOH A 79 679 147 HOH HOH . E 3 HOH A 80 680 219 HOH HOH . E 3 HOH A 81 681 149 HOH HOH . E 3 HOH A 82 682 39 HOH HOH . E 3 HOH A 83 683 12 HOH HOH . E 3 HOH A 84 684 129 HOH HOH . E 3 HOH A 85 685 142 HOH HOH . E 3 HOH A 86 686 14 HOH HOH . E 3 HOH A 87 687 125 HOH HOH . E 3 HOH A 88 688 192 HOH HOH . E 3 HOH A 89 689 78 HOH HOH . E 3 HOH A 90 690 145 HOH HOH . E 3 HOH A 91 691 160 HOH HOH . E 3 HOH A 92 692 19 HOH HOH . E 3 HOH A 93 693 93 HOH HOH . E 3 HOH A 94 694 146 HOH HOH . E 3 HOH A 95 695 13 HOH HOH . E 3 HOH A 96 696 47 HOH HOH . E 3 HOH A 97 697 158 HOH HOH . E 3 HOH A 98 698 73 HOH HOH . E 3 HOH A 99 699 156 HOH HOH . E 3 HOH A 100 700 110 HOH HOH . E 3 HOH A 101 701 17 HOH HOH . E 3 HOH A 102 702 213 HOH HOH . E 3 HOH A 103 703 172 HOH HOH . E 3 HOH A 104 704 220 HOH HOH . E 3 HOH A 105 705 88 HOH HOH . E 3 HOH A 106 706 91 HOH HOH . E 3 HOH A 107 707 92 HOH HOH . E 3 HOH A 108 708 108 HOH HOH . E 3 HOH A 109 709 135 HOH HOH . E 3 HOH A 110 710 159 HOH HOH . E 3 HOH A 111 711 128 HOH HOH . E 3 HOH A 112 712 81 HOH HOH . E 3 HOH A 113 713 52 HOH HOH . E 3 HOH A 114 714 215 HOH HOH . E 3 HOH A 115 715 85 HOH HOH . E 3 HOH A 116 716 157 HOH HOH . E 3 HOH A 117 717 89 HOH HOH . E 3 HOH A 118 718 126 HOH HOH . E 3 HOH A 119 719 140 HOH HOH . E 3 HOH A 120 720 143 HOH HOH . E 3 HOH A 121 721 171 HOH HOH . E 3 HOH A 122 722 161 HOH HOH . E 3 HOH A 123 723 83 HOH HOH . F 3 HOH B 1 601 105 HOH HOH . F 3 HOH B 2 602 104 HOH HOH . F 3 HOH B 3 603 132 HOH HOH . F 3 HOH B 4 604 216 HOH HOH . F 3 HOH B 5 605 180 HOH HOH . F 3 HOH B 6 606 33 HOH HOH . F 3 HOH B 7 607 200 HOH HOH . F 3 HOH B 8 608 101 HOH HOH . F 3 HOH B 9 609 209 HOH HOH . F 3 HOH B 10 610 202 HOH HOH . F 3 HOH B 11 611 118 HOH HOH . F 3 HOH B 12 612 69 HOH HOH . F 3 HOH B 13 613 181 HOH HOH . F 3 HOH B 14 614 8 HOH HOH . F 3 HOH B 15 615 15 HOH HOH . F 3 HOH B 16 616 166 HOH HOH . F 3 HOH B 17 617 2 HOH HOH . F 3 HOH B 18 618 18 HOH HOH . F 3 HOH B 19 619 184 HOH HOH . F 3 HOH B 20 620 178 HOH HOH . F 3 HOH B 21 621 97 HOH HOH . F 3 HOH B 22 622 66 HOH HOH . F 3 HOH B 23 623 37 HOH HOH . F 3 HOH B 24 624 185 HOH HOH . F 3 HOH B 25 625 26 HOH HOH . F 3 HOH B 26 626 64 HOH HOH . F 3 HOH B 27 627 190 HOH HOH . F 3 HOH B 28 628 168 HOH HOH . F 3 HOH B 29 629 60 HOH HOH . F 3 HOH B 30 630 96 HOH HOH . F 3 HOH B 31 631 54 HOH HOH . F 3 HOH B 32 632 25 HOH HOH . F 3 HOH B 33 633 53 HOH HOH . F 3 HOH B 34 634 61 HOH HOH . F 3 HOH B 35 635 57 HOH HOH . F 3 HOH B 36 636 189 HOH HOH . F 3 HOH B 37 637 174 HOH HOH . F 3 HOH B 38 638 183 HOH HOH . F 3 HOH B 39 639 182 HOH HOH . F 3 HOH B 40 640 144 HOH HOH . F 3 HOH B 41 641 48 HOH HOH . F 3 HOH B 42 642 187 HOH HOH . F 3 HOH B 43 643 120 HOH HOH . F 3 HOH B 44 644 29 HOH HOH . F 3 HOH B 45 645 197 HOH HOH . F 3 HOH B 46 646 44 HOH HOH . F 3 HOH B 47 647 198 HOH HOH . F 3 HOH B 48 648 32 HOH HOH . F 3 HOH B 49 649 4 HOH HOH . F 3 HOH B 50 650 50 HOH HOH . F 3 HOH B 51 651 211 HOH HOH . F 3 HOH B 52 652 65 HOH HOH . F 3 HOH B 53 653 212 HOH HOH . F 3 HOH B 54 654 59 HOH HOH . F 3 HOH B 55 655 194 HOH HOH . F 3 HOH B 56 656 167 HOH HOH . F 3 HOH B 57 657 115 HOH HOH . F 3 HOH B 58 658 203 HOH HOH . F 3 HOH B 59 659 74 HOH HOH . F 3 HOH B 60 660 94 HOH HOH . F 3 HOH B 61 661 111 HOH HOH . F 3 HOH B 62 662 75 HOH HOH . F 3 HOH B 63 663 116 HOH HOH . F 3 HOH B 64 664 55 HOH HOH . F 3 HOH B 65 665 114 HOH HOH . F 3 HOH B 66 666 40 HOH HOH . F 3 HOH B 67 667 99 HOH HOH . F 3 HOH B 68 668 201 HOH HOH . F 3 HOH B 69 669 191 HOH HOH . F 3 HOH B 70 670 3 HOH HOH . F 3 HOH B 71 671 107 HOH HOH . F 3 HOH B 72 672 9 HOH HOH . F 3 HOH B 73 673 103 HOH HOH . F 3 HOH B 74 674 196 HOH HOH . F 3 HOH B 75 675 62 HOH HOH . F 3 HOH B 76 676 1 HOH HOH . F 3 HOH B 77 677 56 HOH HOH . F 3 HOH B 78 678 113 HOH HOH . F 3 HOH B 79 679 68 HOH HOH . F 3 HOH B 80 680 218 HOH HOH . F 3 HOH B 81 681 46 HOH HOH . F 3 HOH B 82 682 117 HOH HOH . F 3 HOH B 83 683 195 HOH HOH . F 3 HOH B 84 684 186 HOH HOH . F 3 HOH B 85 685 204 HOH HOH . F 3 HOH B 86 686 16 HOH HOH . F 3 HOH B 87 687 206 HOH HOH . F 3 HOH B 88 688 67 HOH HOH . F 3 HOH B 89 689 179 HOH HOH . F 3 HOH B 90 690 177 HOH HOH . F 3 HOH B 91 691 210 HOH HOH . F 3 HOH B 92 692 176 HOH HOH . F 3 HOH B 93 693 188 HOH HOH . F 3 HOH B 94 694 175 HOH HOH . F 3 HOH B 95 695 208 HOH HOH . F 3 HOH B 96 696 199 HOH HOH . F 3 HOH B 97 697 90 HOH HOH . F 3 HOH B 98 698 205 HOH HOH . F 3 HOH B 99 699 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4IP . . . C 2 4.55 8.732 4.897 1 43.2 ? C1 4IP 501 A 1 HETATM 2 O O1 4IP . . . C 2 3.301 9.149 5.417 1 59.47 ? O1 4IP 501 A 1 HETATM 3 C C2 4IP . . . C 2 4.416 7.433 4.121 1 22.45 ? C2 4IP 501 A 1 HETATM 4 O O2 4IP . . . C 2 4.088 6.363 4.984 1 24.05 ? O2 4IP 501 A 1 HETATM 5 C C3 4IP . . . C 2 5.71 7.144 3.359 1 21.66 ? C3 4IP 501 A 1 HETATM 6 O O3 4IP . . . C 2 5.687 5.83 2.808 1 15.03 ? O3 4IP 501 A 1 HETATM 7 C C4 4IP . . . C 2 7.024 7.675 4.003 1 36.46 ? C4 4IP 501 A 1 HETATM 8 O O4 4IP . . . C 2 8.308 7.036 3.892 1 23.76 ? O4 4IP 501 A 1 HETATM 9 C C5 4IP . . . C 2 6.941 8.392 5.382 1 19.97 ? C5 4IP 501 A 1 HETATM 10 O O5 4IP . . . C 2 7.859 7.885 6.342 1 30.48 ? O5 4IP 501 A 1 HETATM 11 C C6 4IP . . . C 2 5.565 8.537 6.001 1 30.28 ? C6 4IP 501 A 1 HETATM 12 O O6 4IP . . . C 2 5.604 9.703 6.804 1 45.12 ? O6 4IP 501 A 1 HETATM 13 P P1 4IP . . . C 2 2.421 10.174 4.584 1 85.41 ? P1 4IP 501 A 1 HETATM 14 O O1P 4IP . . . C 2 1.685 9.449 3.475 1 50.02 ? O1P 4IP 501 A 1 HETATM 15 O O2P 4IP . . . C 2 3.303 11.248 3.986 1 67.27 ? O2P 4IP 501 A 1 HETATM 16 O O3P 4IP . . . C 2 1.415 10.81 5.518 1 79.05 ? O3P 4IP 501 A 1 HETATM 17 P P3 4IP . . . C 2 5.669 5.81 1.2 1 16.09 ? P3 4IP 501 A 1 HETATM 18 O O4P 4IP . . . C 2 4.544 6.64 0.625 1 17.33 ? O4P 4IP 501 A 1 HETATM 19 O O5P 4IP . . . C 2 5.543 4.364 0.81 1 10.14 ? O5P 4IP 501 A 1 HETATM 20 O O6P 4IP . . . C 2 7.002 6.36 0.735 1 13.86 ? O6P 4IP 501 A 1 HETATM 21 P P4 4IP . . . C 2 8.968 5.635 3.509 1 21.06 ? P4 4IP 501 A 1 HETATM 22 O O7P 4IP . . . C 2 8.308 4.489 4.259 1 18.41 ? O7P 4IP 501 A 1 HETATM 23 O O8P 4IP . . . C 2 10.385 5.831 4.024 1 20.55 ? O8P 4IP 501 A 1 HETATM 24 O O9P 4IP . . . C 2 9.013 5.457 2.002 1 20.8 ? O9P 4IP 501 A 1 HETATM 25 P P5 4IP . . . C 2 9.252 8.631 6.498 1 35.2 ? P5 4IP 501 A 1 HETATM 26 O OPF 4IP . . . C 2 10.372 7.654 6.242 1 48.69 ? OPF 4IP 501 A 1 HETATM 27 O OPG 4IP . . . C 2 9.328 9.76 5.497 1 36.35 ? OPG 4IP 501 A 1 HETATM 28 O OPH 4IP . . . C 2 9.395 9.139 7.91 1 48.83 ? OPH 4IP 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #