data_5D42
#
_model_server_result.job_id            qnOPWrH22pG32FBfXFYa4w 
_model_server_result.datetime_utc      '2024-11-27 22:05:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d42 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5D42 
#
_exptl.entry_id    5D42 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5D42 
_cell.length_a            74.084 
_cell.length_b            74.084 
_cell.length_c            130.312 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D42 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A OE2 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 A OE2 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc7 B MN MN . A MN 301 1_555 D O2P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc8 B MN MN . A MN 301 1_555 D O3P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc9 C MN MN . A MN 302 1_555 D O2P TMP . A TMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc10 C MN MN . A MN 302 1_555 E O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5D42 
_atom_sites.fract_transf_matrix[1][1]    0.013498 
_atom_sites.fract_transf_matrix[1][2]    0.007793 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 201 MN MN . 
C 2 MN A 1 302 202 MN MN . 
D 3 TMP A 1 303 1 TMP TMP . 
E 4 HOH A 1 401 21 HOH HOH . 
E 4 HOH A 2 402 14 HOH HOH . 
E 4 HOH A 3 403 10 HOH HOH . 
E 4 HOH A 4 404 46 HOH HOH . 
E 4 HOH A 5 405 23 HOH HOH . 
E 4 HOH A 6 406 1 HOH HOH . 
E 4 HOH A 7 407 17 HOH HOH . 
E 4 HOH A 8 408 15 HOH HOH . 
E 4 HOH A 9 409 57 HOH HOH . 
E 4 HOH A 10 410 63 HOH HOH . 
E 4 HOH A 11 411 48 HOH HOH . 
E 4 HOH A 12 412 52 HOH HOH . 
E 4 HOH A 13 413 58 HOH HOH . 
E 4 HOH A 14 414 5 HOH HOH . 
E 4 HOH A 15 415 50 HOH HOH . 
E 4 HOH A 16 416 61 HOH HOH . 
E 4 HOH A 17 417 4 HOH HOH . 
E 4 HOH A 18 418 30 HOH HOH . 
E 4 HOH A 19 419 62 HOH HOH . 
E 4 HOH A 20 420 64 HOH HOH . 
E 4 HOH A 21 421 36 HOH HOH . 
E 4 HOH A 22 422 40 HOH HOH . 
E 4 HOH A 23 423 44 HOH HOH . 
E 4 HOH A 24 424 35 HOH HOH . 
E 4 HOH A 25 425 47 HOH HOH . 
E 4 HOH A 26 426 42 HOH HOH . 
E 4 HOH A 27 427 27 HOH HOH . 
E 4 HOH A 28 428 59 HOH HOH . 
E 4 HOH A 29 429 13 HOH HOH . 
E 4 HOH A 30 430 49 HOH HOH . 
E 4 HOH A 31 431 34 HOH HOH . 
E 4 HOH A 32 432 26 HOH HOH . 
E 4 HOH A 33 433 22 HOH HOH . 
E 4 HOH A 34 434 25 HOH HOH . 
E 4 HOH A 35 435 8 HOH HOH . 
E 4 HOH A 36 436 60 HOH HOH . 
E 4 HOH A 37 437 39 HOH HOH . 
E 4 HOH A 38 438 43 HOH HOH . 
E 4 HOH A 39 439 18 HOH HOH . 
E 4 HOH A 40 440 31 HOH HOH . 
E 4 HOH A 41 441 32 HOH HOH . 
E 4 HOH A 42 442 56 HOH HOH . 
E 4 HOH A 43 443 41 HOH HOH . 
E 4 HOH A 44 444 12 HOH HOH . 
E 4 HOH A 45 445 29 HOH HOH . 
E 4 HOH A 46 446 24 HOH HOH . 
E 4 HOH A 47 447 6 HOH HOH . 
E 4 HOH A 48 448 54 HOH HOH . 
E 4 HOH A 49 449 9 HOH HOH . 
E 4 HOH A 50 450 2 HOH HOH . 
E 4 HOH A 51 451 33 HOH HOH . 
E 4 HOH A 52 452 3 HOH HOH . 
E 4 HOH A 53 453 28 HOH HOH . 
E 4 HOH A 54 454 37 HOH HOH . 
E 4 HOH A 55 455 11 HOH HOH . 
E 4 HOH A 56 456 38 HOH HOH . 
E 4 HOH A 57 457 45 HOH HOH . 
E 4 HOH A 58 458 19 HOH HOH . 
E 4 HOH A 59 459 20 HOH HOH . 
E 4 HOH A 60 460 51 HOH HOH . 
E 4 HOH A 61 461 7 HOH HOH . 
E 4 HOH A 62 462 16 HOH HOH . 
E 4 HOH A 63 463 55 HOH HOH . 
E 4 HOH A 64 464 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               23.089 
_atom_site.Cartn_y               16.16 
_atom_site.Cartn_z               4.379 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#