data_5D46
#
_model_server_result.job_id            pZDs-MK6D9kXe1ApuQqQWg 
_model_server_result.datetime_utc      '2024-10-18 16:23:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5d46 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":605}' 
#
_entry.id    5D46 
#
_exptl.entry_id    5D46 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.13 
_cell.angle_gamma         90 
_cell.entry_id            5D46 
_cell.length_a            55.98 
_cell.length_b            75 
_cell.length_c            125.91 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5D46 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 143 A THR 253 1_555 G NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc2 A O VAL 145 A VAL 255 1_555 G NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc3 A O VAL 148 A VAL 258 1_555 G NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc4 A OD1 ASP 233 A ASP 343 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc5 A OD2 ASP 235 A ASP 345 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc6 F MG MG . A MG 601 1_555 H O2 POP . A POP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc7 F MG MG . A MG 601 1_555 H O6 POP . A POP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? 
metalc ? metalc8 F MG MG . A MG 601 1_555 C OP1 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc9 G NA NA . A NA 602 1_555 C OP1 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
hydrog WATSON-CRICK hydrog1 B N1 DA 1 B DA 1 1_555 C N3 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N6 DA 1 B DA 1 1_555 C O4 DT 5 C DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N1 DA 2 B DA 2 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N6 DA 2 B DA 2 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B N1 DA 3 B DA 3 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N6 DA 3 B DA 3 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B N1 DA 4 B DA 4 1_555 C N3 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N6 DA 4 B DA 4 1_555 C O4 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B N1 DA 5 B DA 5 1_555 C N3 DT 1 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N6 DA 5 B DA 5 1_555 C O4 DT 1 C DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog11 C N1 DG 6 C DG 6 1_555 D O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 C N3 DC 7 C DC 7 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 C N4 DC 7 C DC 7 1_555 D O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 C O2 DC 7 C DC 7 1_555 D N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 D N3 DT 1 D DT 1 1_555 E N1 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 D O4 DT 1 D DT 1 1_555 E N6 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 D N3 DT 2 D DT 2 1_555 E N1 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 D O4 DT 2 D DT 2 1_555 E N6 DA 4 E DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 D N3 DT 3 D DT 3 1_555 E N1 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 D O4 DT 3 D DT 3 1_555 E N6 DA 3 E DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 D N3 DT 4 D DT 4 1_555 E N1 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 D O4 DT 4 D DT 4 1_555 E N6 DA 2 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 D N3 DT 5 D DT 5 1_555 E N1 DA 1 E DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 D O4 DT 5 D DT 5 1_555 E N6 DA 1 E DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 455 n n 
S O2 SO4 doub 456 n n 
S O3 SO4 sing 457 n n 
S O4 SO4 sing 458 n n 
#
_atom_sites.entry_id                     5D46 
_atom_sites.fract_transf_matrix[1][1]    0.017864 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002552 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013333 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008023 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 MG A 1 601 1 MG MG . 
G 5 NA A 1 602 101 NA NA . 
H 6 POP A 1 603 201 POP POP . 
I 7 SO4 A 1 604 301 SO4 SO4 . 
J 7 SO4 A 1 605 401 SO4 SO4 . 
K 8 ACT A 1 606 501 ACT ACT . 
L 8 ACT A 1 607 601 ACT ACT . 
M 8 ACT A 1 608 701 ACT ACT . 
N 9 HOH A 1 701 79 HOH HOH . 
N 9 HOH A 2 702 34 HOH HOH . 
N 9 HOH A 3 703 76 HOH HOH . 
N 9 HOH A 4 704 75 HOH HOH . 
N 9 HOH A 5 705 17 HOH HOH . 
N 9 HOH A 6 706 28 HOH HOH . 
N 9 HOH A 7 707 29 HOH HOH . 
N 9 HOH A 8 708 45 HOH HOH . 
N 9 HOH A 9 709 33 HOH HOH . 
N 9 HOH A 10 710 96 HOH HOH . 
N 9 HOH A 11 711 19 HOH HOH . 
N 9 HOH A 12 712 25 HOH HOH . 
N 9 HOH A 13 713 39 HOH HOH . 
N 9 HOH A 14 714 1 HOH HOH . 
N 9 HOH A 15 715 24 HOH HOH . 
N 9 HOH A 16 716 46 HOH HOH . 
N 9 HOH A 17 717 38 HOH HOH . 
N 9 HOH A 18 718 35 HOH HOH . 
N 9 HOH A 19 719 43 HOH HOH . 
N 9 HOH A 20 720 32 HOH HOH . 
N 9 HOH A 21 721 13 HOH HOH . 
N 9 HOH A 22 722 27 HOH HOH . 
N 9 HOH A 23 723 94 HOH HOH . 
N 9 HOH A 24 724 97 HOH HOH . 
N 9 HOH A 25 725 78 HOH HOH . 
N 9 HOH A 26 726 42 HOH HOH . 
N 9 HOH A 27 727 30 HOH HOH . 
N 9 HOH A 28 728 84 HOH HOH . 
N 9 HOH A 29 729 20 HOH HOH . 
N 9 HOH A 30 730 92 HOH HOH . 
N 9 HOH A 31 731 77 HOH HOH . 
N 9 HOH A 32 732 37 HOH HOH . 
N 9 HOH A 33 733 91 HOH HOH . 
N 9 HOH A 34 734 26 HOH HOH . 
N 9 HOH A 35 735 58 HOH HOH . 
N 9 HOH A 36 736 31 HOH HOH . 
N 9 HOH A 37 737 88 HOH HOH . 
N 9 HOH A 38 738 40 HOH HOH . 
N 9 HOH A 39 739 87 HOH HOH . 
N 9 HOH A 40 740 10 HOH HOH . 
N 9 HOH A 41 741 95 HOH HOH . 
N 9 HOH A 42 742 18 HOH HOH . 
N 9 HOH A 43 743 16 HOH HOH . 
N 9 HOH A 44 744 60 HOH HOH . 
N 9 HOH A 45 745 47 HOH HOH . 
N 9 HOH A 46 746 3 HOH HOH . 
N 9 HOH A 47 747 51 HOH HOH . 
N 9 HOH A 48 748 12 HOH HOH . 
N 9 HOH A 49 749 80 HOH HOH . 
N 9 HOH A 50 750 67 HOH HOH . 
N 9 HOH A 51 751 61 HOH HOH . 
N 9 HOH A 52 752 99 HOH HOH . 
N 9 HOH A 53 753 66 HOH HOH . 
N 9 HOH A 54 754 53 HOH HOH . 
N 9 HOH A 55 755 62 HOH HOH . 
N 9 HOH A 56 756 49 HOH HOH . 
N 9 HOH A 57 757 110 HOH HOH . 
N 9 HOH A 58 758 14 HOH HOH . 
N 9 HOH A 59 759 55 HOH HOH . 
N 9 HOH A 60 760 48 HOH HOH . 
N 9 HOH A 61 761 70 HOH HOH . 
N 9 HOH A 62 762 102 HOH HOH . 
N 9 HOH A 63 763 104 HOH HOH . 
N 9 HOH A 64 764 100 HOH HOH . 
N 9 HOH A 65 765 23 HOH HOH . 
N 9 HOH A 66 766 81 HOH HOH . 
N 9 HOH A 67 767 41 HOH HOH . 
N 9 HOH A 68 768 101 HOH HOH . 
N 9 HOH A 69 769 108 HOH HOH . 
N 9 HOH A 70 770 59 HOH HOH . 
N 9 HOH A 71 771 93 HOH HOH . 
N 9 HOH A 72 772 74 HOH HOH . 
N 9 HOH A 73 773 65 HOH HOH . 
N 9 HOH A 74 774 57 HOH HOH . 
N 9 HOH A 75 775 103 HOH HOH . 
N 9 HOH A 76 776 15 HOH HOH . 
N 9 HOH A 77 777 56 HOH HOH . 
N 9 HOH A 78 778 63 HOH HOH . 
N 9 HOH A 79 779 107 HOH HOH . 
N 9 HOH A 80 780 73 HOH HOH . 
N 9 HOH A 81 781 98 HOH HOH . 
N 9 HOH A 82 782 68 HOH HOH . 
N 9 HOH A 83 783 50 HOH HOH . 
N 9 HOH A 84 784 64 HOH HOH . 
N 9 HOH A 85 785 105 HOH HOH . 
N 9 HOH A 86 786 109 HOH HOH . 
N 9 HOH A 87 787 106 HOH HOH . 
O 9 HOH B 1 101 52 HOH HOH . 
O 9 HOH B 2 102 54 HOH HOH . 
O 9 HOH B 3 103 72 HOH HOH . 
O 9 HOH B 4 104 9 HOH HOH . 
O 9 HOH B 5 105 4 HOH HOH . 
O 9 HOH B 6 106 11 HOH HOH . 
O 9 HOH B 7 107 71 HOH HOH . 
P 9 HOH C 1 101 21 HOH HOH . 
P 9 HOH C 2 102 22 HOH HOH . 
P 9 HOH C 3 103 36 HOH HOH . 
Q 9 HOH D 1 101 6 HOH HOH . 
Q 9 HOH D 2 102 82 HOH HOH . 
Q 9 HOH D 3 103 5 HOH HOH . 
R 9 HOH E 1 101 85 HOH HOH . 
R 9 HOH E 2 102 44 HOH HOH . 
R 9 HOH E 3 103 2 HOH HOH . 
R 9 HOH E 4 104 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . J 7 40.109 11.444 9.779 1 169.34 ? S SO4 605 A 1 
HETATM 2 O O1 SO4 . . . J 7 41.504 11.078 10.011 1 168.99 ? O1 SO4 605 A 1 
HETATM 3 O O2 SO4 . . . J 7 39.813 11.437 8.345 1 169.98 ? O2 SO4 605 A 1 
HETATM 4 O O3 SO4 . . . J 7 39.233 10.49 10.454 1 168.67 ? O3 SO4 605 A 1 
HETATM 5 O O4 SO4 . . . J 7 39.886 12.778 10.342 1 169.74 ? O4 SO4 605 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#