data_5D47 # _model_server_result.job_id 2EyZAWtq4Jh13E5uWXeMcw _model_server_result.datetime_utc '2024-10-19 03:58:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5D47 # _exptl.entry_id 5D47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D47 _cell.length_a 32.3 _cell.length_b 53.83 _cell.length_c 74.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H24 N2 O3' _chem_comp.formula_weight 412.48 _chem_comp.id L19 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-cyclopropyl-3-(3-methoxypyridin-4-yl)-2-phenyl-1H-indol-1-yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 L19 doub 173 n y C17 C16 L19 sing 174 n y C18 C19 L19 sing 175 n y C16 C15 L19 doub 176 n y O1 C22 L19 doub 177 n n C19 C14 L19 doub 178 n y C15 C14 L19 sing 179 n y C14 C13 L19 sing 180 n n C22 O2 L19 sing 181 n n C22 C21 L19 sing 182 n n C21 C20 L19 sing 183 n n C20 N1 L19 sing 184 n n C13 N1 L19 sing 185 n y C13 C6 L19 doub 186 n y C3 C4 L19 sing 187 n y C3 N L19 doub 188 n y N1 C12 L19 sing 189 n y C4 C5 L19 doub 190 n y N C2 L19 sing 191 n y C5 C6 L19 sing 192 n n C5 C1 L19 sing 193 n y C6 C7 L19 sing 194 n y C2 C1 L19 doub 195 n y C1 O L19 sing 196 n n C12 C7 L19 sing 197 n y C12 C11 L19 doub 198 n y O C L19 sing 199 n n C7 C8 L19 doub 200 n y C11 C10 L19 sing 201 n y C8 C9 L19 sing 202 n y C10 C9 L19 doub 203 n y C9 C23 L19 sing 204 n n C23 C25 L19 sing 205 n n C23 C24 L19 sing 206 n n C25 C24 L19 sing 207 n n O2 H1 L19 sing 208 n n C21 H2 L19 sing 209 n n C21 H3 L19 sing 210 n n C20 H4 L19 sing 211 n n C20 H5 L19 sing 212 n n C15 H6 L19 sing 213 n n C16 H7 L19 sing 214 n n C17 H8 L19 sing 215 n n C18 H9 L19 sing 216 n n C19 H10 L19 sing 217 n n C8 H11 L19 sing 218 n n C23 H12 L19 sing 219 n n C24 H13 L19 sing 220 n n C24 H14 L19 sing 221 n n C25 H15 L19 sing 222 n n C25 H16 L19 sing 223 n n C10 H17 L19 sing 224 n n C11 H18 L19 sing 225 n n C4 H19 L19 sing 226 n n C3 H20 L19 sing 227 n n C2 H21 L19 sing 228 n n C H22 L19 sing 229 n n C H23 L19 sing 230 n n C H24 L19 sing 231 n n # _atom_sites.entry_id 5D47 _atom_sites.fract_transf_matrix[1][1] 0.03096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018577 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L19 A 1 201 1 L19 L19 . C 3 HOH A 1 301 102 HOH HOH . C 3 HOH A 2 302 117 HOH HOH . C 3 HOH A 3 303 66 HOH HOH . C 3 HOH A 4 304 53 HOH HOH . C 3 HOH A 5 305 76 HOH HOH . C 3 HOH A 6 306 87 HOH HOH . C 3 HOH A 7 307 27 HOH HOH . C 3 HOH A 8 308 57 HOH HOH . C 3 HOH A 9 309 26 HOH HOH . C 3 HOH A 10 310 20 HOH HOH . C 3 HOH A 11 311 59 HOH HOH . C 3 HOH A 12 312 55 HOH HOH . C 3 HOH A 13 313 105 HOH HOH . C 3 HOH A 14 314 34 HOH HOH . C 3 HOH A 15 315 22 HOH HOH . C 3 HOH A 16 316 94 HOH HOH . C 3 HOH A 17 317 91 HOH HOH . C 3 HOH A 18 318 12 HOH HOH . C 3 HOH A 19 319 75 HOH HOH . C 3 HOH A 20 320 86 HOH HOH . C 3 HOH A 21 321 9 HOH HOH . C 3 HOH A 22 322 49 HOH HOH . C 3 HOH A 23 323 25 HOH HOH . C 3 HOH A 24 324 10 HOH HOH . C 3 HOH A 25 325 73 HOH HOH . C 3 HOH A 26 326 42 HOH HOH . C 3 HOH A 27 327 11 HOH HOH . C 3 HOH A 28 328 69 HOH HOH . C 3 HOH A 29 329 5 HOH HOH . C 3 HOH A 30 330 16 HOH HOH . C 3 HOH A 31 331 83 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 23 HOH HOH . C 3 HOH A 34 334 28 HOH HOH . C 3 HOH A 35 335 29 HOH HOH . C 3 HOH A 36 336 61 HOH HOH . C 3 HOH A 37 337 1 HOH HOH . C 3 HOH A 38 338 3 HOH HOH . C 3 HOH A 39 339 56 HOH HOH . C 3 HOH A 40 340 37 HOH HOH . C 3 HOH A 41 341 21 HOH HOH . C 3 HOH A 42 342 46 HOH HOH . C 3 HOH A 43 343 15 HOH HOH . C 3 HOH A 44 344 89 HOH HOH . C 3 HOH A 45 345 18 HOH HOH . C 3 HOH A 46 346 71 HOH HOH . C 3 HOH A 47 347 44 HOH HOH . C 3 HOH A 48 348 119 HOH HOH . C 3 HOH A 49 349 8 HOH HOH . C 3 HOH A 50 350 110 HOH HOH . C 3 HOH A 51 351 45 HOH HOH . C 3 HOH A 52 352 104 HOH HOH . C 3 HOH A 53 353 93 HOH HOH . C 3 HOH A 54 354 92 HOH HOH . C 3 HOH A 55 355 41 HOH HOH . C 3 HOH A 56 356 96 HOH HOH . C 3 HOH A 57 357 72 HOH HOH . C 3 HOH A 58 358 48 HOH HOH . C 3 HOH A 59 359 98 HOH HOH . C 3 HOH A 60 360 112 HOH HOH . C 3 HOH A 61 361 113 HOH HOH . C 3 HOH A 62 362 32 HOH HOH . C 3 HOH A 63 363 19 HOH HOH . C 3 HOH A 64 364 17 HOH HOH . C 3 HOH A 65 365 7 HOH HOH . C 3 HOH A 66 366 36 HOH HOH . C 3 HOH A 67 367 60 HOH HOH . C 3 HOH A 68 368 52 HOH HOH . C 3 HOH A 69 369 103 HOH HOH . C 3 HOH A 70 370 35 HOH HOH . C 3 HOH A 71 371 40 HOH HOH . C 3 HOH A 72 372 88 HOH HOH . C 3 HOH A 73 373 43 HOH HOH . C 3 HOH A 74 374 97 HOH HOH . C 3 HOH A 75 375 4 HOH HOH . C 3 HOH A 76 376 78 HOH HOH . C 3 HOH A 77 377 50 HOH HOH . C 3 HOH A 78 378 39 HOH HOH . C 3 HOH A 79 379 6 HOH HOH . C 3 HOH A 80 380 33 HOH HOH . C 3 HOH A 81 381 30 HOH HOH . C 3 HOH A 82 382 2 HOH HOH . C 3 HOH A 83 383 74 HOH HOH . C 3 HOH A 84 384 68 HOH HOH . C 3 HOH A 85 385 38 HOH HOH . C 3 HOH A 86 386 58 HOH HOH . C 3 HOH A 87 387 70 HOH HOH . C 3 HOH A 88 388 13 HOH HOH . C 3 HOH A 89 389 51 HOH HOH . C 3 HOH A 90 390 85 HOH HOH . C 3 HOH A 91 391 14 HOH HOH . C 3 HOH A 92 392 65 HOH HOH . C 3 HOH A 93 393 100 HOH HOH . C 3 HOH A 94 394 31 HOH HOH . C 3 HOH A 95 395 64 HOH HOH . C 3 HOH A 96 396 111 HOH HOH . C 3 HOH A 97 397 47 HOH HOH . C 3 HOH A 98 398 80 HOH HOH . C 3 HOH A 99 399 77 HOH HOH . C 3 HOH A 100 400 84 HOH HOH . C 3 HOH A 101 401 106 HOH HOH . C 3 HOH A 102 402 63 HOH HOH . C 3 HOH A 103 403 90 HOH HOH . C 3 HOH A 104 404 108 HOH HOH . C 3 HOH A 105 405 109 HOH HOH . C 3 HOH A 106 406 107 HOH HOH . C 3 HOH A 107 407 82 HOH HOH . C 3 HOH A 108 408 67 HOH HOH . C 3 HOH A 109 409 99 HOH HOH . C 3 HOH A 110 410 79 HOH HOH . C 3 HOH A 111 411 120 HOH HOH . C 3 HOH A 112 412 115 HOH HOH . C 3 HOH A 113 413 118 HOH HOH . C 3 HOH A 114 414 81 HOH HOH . C 3 HOH A 115 415 114 HOH HOH . C 3 HOH A 116 416 95 HOH HOH . C 3 HOH A 117 417 62 HOH HOH . C 3 HOH A 118 418 54 HOH HOH . C 3 HOH A 119 419 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 L19 . . . B 2 6.561 5.88 14.327 1 26.21 ? O1 L19 201 A 1 HETATM 2 C C22 L19 . . . B 2 6.697 5.899 15.513 1 26.01 ? C22 L19 201 A 1 HETATM 3 O O2 L19 . . . B 2 6.088 4.887 16.092 1 27.83 ? O2 L19 201 A 1 HETATM 4 C C21 L19 . . . B 2 7.482 6.988 16.269 1 24.27 ? C21 L19 201 A 1 HETATM 5 C C20 L19 . . . B 2 6.724 8.306 16.486 1 27.76 ? C20 L19 201 A 1 HETATM 6 N N1 L19 . . . B 2 5.563 7.949 17.316 1 27.63 ? N1 L19 201 A 1 HETATM 7 C C13 L19 . . . B 2 4.269 7.732 16.828 1 28.9 ? C13 L19 201 A 1 HETATM 8 C C14 L19 . . . B 2 3.799 7.956 15.414 1 28.94 ? C14 L19 201 A 1 HETATM 9 C C15 L19 . . . B 2 4.077 9.228 14.893 1 26.47 ? C15 L19 201 A 1 HETATM 10 C C16 L19 . . . B 2 3.717 9.542 13.577 1 25.21 ? C16 L19 201 A 1 HETATM 11 C C17 L19 . . . B 2 3.025 8.546 12.82 1 26.33 ? C17 L19 201 A 1 HETATM 12 C C18 L19 . . . B 2 2.735 7.225 13.326 1 22.53 ? C18 L19 201 A 1 HETATM 13 C C19 L19 . . . B 2 3.143 6.945 14.619 1 24.25 ? C19 L19 201 A 1 HETATM 14 C C6 L19 . . . B 2 3.383 7.304 17.923 1 29.13 ? C6 L19 201 A 1 HETATM 15 C C7 L19 . . . B 2 4.303 7.225 19.102 1 31.69 ? C7 L19 201 A 1 HETATM 16 C C8 L19 . . . B 2 4.048 6.875 20.44 1 33.54 ? C8 L19 201 A 1 HETATM 17 C C9 L19 . . . B 2 5.143 6.969 21.31 1 32.65 ? C9 L19 201 A 1 HETATM 18 C C23 L19 . . . B 2 4.996 6.546 22.717 1 36.1 ? C23 L19 201 A 1 HETATM 19 C C24 L19 . . . B 2 5.358 7.757 23.535 1 35.08 ? C24 L19 201 A 1 HETATM 20 C C25 L19 . . . B 2 3.902 7.222 23.531 1 36.2 ? C25 L19 201 A 1 HETATM 21 C C10 L19 . . . B 2 6.444 7.358 20.876 1 28.61 ? C10 L19 201 A 1 HETATM 22 C C11 L19 . . . B 2 6.739 7.702 19.554 1 26.65 ? C11 L19 201 A 1 HETATM 23 C C12 L19 . . . B 2 5.676 7.646 18.632 1 29.32 ? C12 L19 201 A 1 HETATM 24 C C5 L19 . . . B 2 1.933 6.954 17.854 1 28.4 ? C5 L19 201 A 1 HETATM 25 C C4 L19 . . . B 2 0.923 7.791 17.341 1 27.22 ? C4 L19 201 A 1 HETATM 26 C C3 L19 . . . B 2 -0.423 7.319 17.298 1 25.62 ? C3 L19 201 A 1 HETATM 27 N N L19 . . . B 2 -0.686 6.089 17.8 1 27.77 ? N L19 201 A 1 HETATM 28 C C2 L19 . . . B 2 0.214 5.226 18.336 1 23.26 ? C2 L19 201 A 1 HETATM 29 C C1 L19 . . . B 2 1.573 5.611 18.375 1 29.64 ? C1 L19 201 A 1 HETATM 30 O O L19 . . . B 2 2.573 4.803 18.902 1 28.27 ? O L19 201 A 1 HETATM 31 C C L19 . . . B 2 2.064 3.762 19.728 1 27.59 ? C L19 201 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #