data_5D48 # _model_server_result.job_id OpywmUT8PUCT1-vRqPuZDg _model_server_result.datetime_utc '2024-11-22 19:15:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5d48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5D48 # _exptl.entry_id 5D48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.564 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy)phenyl]-1H-indol-1-yl}propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5D48 _cell.length_a 32.08 _cell.length_b 53.73 _cell.length_c 74.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5D48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 133 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 112 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id OE2 _struct_conn.ptnr2_label_comp_id GLU _struct_conn.ptnr2_label_seq_id 150 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id GLU _struct_conn.ptnr2_auth_seq_id 129 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.322 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H31 N3 O3' _chem_comp.formula_weight 457.564 _chem_comp.id L96 _chem_comp.mon_nstd_flag . _chem_comp.name '3-{5-cyclopropyl-3-(3,5-dimethyl-1H-pyrazol-4-yl)-2-[3-(propan-2-yloxy)phenyl]-1H-indol-1-yl}propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 L96 doub 173 n y C16 C17 L96 sing 174 n y C15 C14 L96 sing 175 n y O C17 L96 sing 176 n n O C19 L96 sing 177 n n C17 C18 L96 doub 178 n y C21 C19 L96 sing 179 n n O1 C24 L96 doub 180 n n C20 C19 L96 sing 181 n n C14 C13 L96 doub 182 n y C18 C13 L96 sing 183 n y C24 O2 L96 sing 184 n n C24 C23 L96 sing 185 n n C13 C12 L96 sing 186 n n C23 C22 L96 sing 187 n n C22 N2 L96 sing 188 n n C12 N2 L96 sing 189 n y C12 C5 L96 doub 190 n y N2 C11 L96 sing 191 n y C C1 L96 sing 192 n n N1 C1 L96 sing 193 n y N1 N L96 sing 194 n y C1 C2 L96 doub 195 n y N C3 L96 doub 196 n y C2 C3 L96 sing 197 n y C2 C5 L96 sing 198 n n C3 C4 L96 sing 199 n n C5 C6 L96 sing 200 n y C11 C6 L96 sing 201 n y C11 C10 L96 doub 202 n y C6 C7 L96 doub 203 n y C10 C9 L96 sing 204 n y C7 C8 L96 sing 205 n y C9 C8 L96 doub 206 n y C8 C25 L96 sing 207 n n C25 C26 L96 sing 208 n n C25 C27 L96 sing 209 n n C26 C27 L96 sing 210 n n O2 H1 L96 sing 211 n n C23 H2 L96 sing 212 n n C23 H3 L96 sing 213 n n C22 H4 L96 sing 214 n n C22 H5 L96 sing 215 n n C H6 L96 sing 216 n n C H7 L96 sing 217 n n C H8 L96 sing 218 n n N1 H9 L96 sing 219 n n C4 H10 L96 sing 220 n n C4 H11 L96 sing 221 n n C4 H12 L96 sing 222 n n C7 H13 L96 sing 223 n n C25 H14 L96 sing 224 n n C26 H15 L96 sing 225 n n C26 H16 L96 sing 226 n n C27 H17 L96 sing 227 n n C27 H18 L96 sing 228 n n C9 H19 L96 sing 229 n n C10 H20 L96 sing 230 n n C14 H21 L96 sing 231 n n C15 H22 L96 sing 232 n n C16 H23 L96 sing 233 n n C18 H24 L96 sing 234 n n C19 H25 L96 sing 235 n n C20 H26 L96 sing 236 n n C20 H27 L96 sing 237 n n C20 H28 L96 sing 238 n n C21 H29 L96 sing 239 n n C21 H30 L96 sing 240 n n C21 H31 L96 sing 241 n n # _atom_sites.entry_id 5D48 _atom_sites.fract_transf_matrix[1][1] 0.031172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L96 A 1 201 1 L96 L96 . C 3 PO4 A 1 202 2 PO4 PO4 . D 3 PO4 A 1 203 3 PO4 PO4 . E 4 HOH A 1 301 57 HOH HOH . E 4 HOH A 2 302 109 HOH HOH . E 4 HOH A 3 303 13 HOH HOH . E 4 HOH A 4 304 44 HOH HOH . E 4 HOH A 5 305 51 HOH HOH . E 4 HOH A 6 306 7 HOH HOH . E 4 HOH A 7 307 93 HOH HOH . E 4 HOH A 8 308 43 HOH HOH . E 4 HOH A 9 309 31 HOH HOH . E 4 HOH A 10 310 52 HOH HOH . E 4 HOH A 11 311 38 HOH HOH . E 4 HOH A 12 312 35 HOH HOH . E 4 HOH A 13 313 39 HOH HOH . E 4 HOH A 14 314 21 HOH HOH . E 4 HOH A 15 315 20 HOH HOH . E 4 HOH A 16 316 17 HOH HOH . E 4 HOH A 17 317 95 HOH HOH . E 4 HOH A 18 318 14 HOH HOH . E 4 HOH A 19 319 104 HOH HOH . E 4 HOH A 20 320 66 HOH HOH . E 4 HOH A 21 321 102 HOH HOH . E 4 HOH A 22 322 29 HOH HOH . E 4 HOH A 23 323 91 HOH HOH . E 4 HOH A 24 324 28 HOH HOH . E 4 HOH A 25 325 98 HOH HOH . E 4 HOH A 26 326 56 HOH HOH . E 4 HOH A 27 327 10 HOH HOH . E 4 HOH A 28 328 90 HOH HOH . E 4 HOH A 29 329 5 HOH HOH . E 4 HOH A 30 330 49 HOH HOH . E 4 HOH A 31 331 18 HOH HOH . E 4 HOH A 32 332 77 HOH HOH . E 4 HOH A 33 333 32 HOH HOH . E 4 HOH A 34 334 79 HOH HOH . E 4 HOH A 35 335 6 HOH HOH . E 4 HOH A 36 336 23 HOH HOH . E 4 HOH A 37 337 11 HOH HOH . E 4 HOH A 38 338 50 HOH HOH . E 4 HOH A 39 339 85 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 30 HOH HOH . E 4 HOH A 42 342 19 HOH HOH . E 4 HOH A 43 343 1 HOH HOH . E 4 HOH A 44 344 34 HOH HOH . E 4 HOH A 45 345 27 HOH HOH . E 4 HOH A 46 346 24 HOH HOH . E 4 HOH A 47 347 41 HOH HOH . E 4 HOH A 48 348 88 HOH HOH . E 4 HOH A 49 349 9 HOH HOH . E 4 HOH A 50 350 47 HOH HOH . E 4 HOH A 51 351 36 HOH HOH . E 4 HOH A 52 352 73 HOH HOH . E 4 HOH A 53 353 82 HOH HOH . E 4 HOH A 54 354 89 HOH HOH . E 4 HOH A 55 355 12 HOH HOH . E 4 HOH A 56 356 15 HOH HOH . E 4 HOH A 57 357 42 HOH HOH . E 4 HOH A 58 358 54 HOH HOH . E 4 HOH A 59 359 108 HOH HOH . E 4 HOH A 60 360 16 HOH HOH . E 4 HOH A 61 361 86 HOH HOH . E 4 HOH A 62 362 97 HOH HOH . E 4 HOH A 63 363 26 HOH HOH . E 4 HOH A 64 364 87 HOH HOH . E 4 HOH A 65 365 2 HOH HOH . E 4 HOH A 66 366 103 HOH HOH . E 4 HOH A 67 367 99 HOH HOH . E 4 HOH A 68 368 25 HOH HOH . E 4 HOH A 69 369 33 HOH HOH . E 4 HOH A 70 370 78 HOH HOH . E 4 HOH A 71 371 67 HOH HOH . E 4 HOH A 72 372 101 HOH HOH . E 4 HOH A 73 373 96 HOH HOH . E 4 HOH A 74 374 22 HOH HOH . E 4 HOH A 75 375 8 HOH HOH . E 4 HOH A 76 376 65 HOH HOH . E 4 HOH A 77 377 100 HOH HOH . E 4 HOH A 78 378 81 HOH HOH . E 4 HOH A 79 379 46 HOH HOH . E 4 HOH A 80 380 80 HOH HOH . E 4 HOH A 81 381 63 HOH HOH . E 4 HOH A 82 382 110 HOH HOH . E 4 HOH A 83 383 62 HOH HOH . E 4 HOH A 84 384 84 HOH HOH . E 4 HOH A 85 385 111 HOH HOH . E 4 HOH A 86 386 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 L96 . . . B 2 6.34 5.786 14.366 1 16.05 ? O1 L96 201 A 1 HETATM 2 C C24 L96 . . . B 2 6.511 5.658 15.586 1 19.01 ? C24 L96 201 A 1 HETATM 3 O O2 L96 . . . B 2 5.908 4.634 16.214 1 22.53 ? O2 L96 201 A 1 HETATM 4 C C23 L96 . . . B 2 7.294 6.687 16.387 1 16.6 ? C23 L96 201 A 1 HETATM 5 C C22 L96 . . . B 2 6.392 7.9 16.672 1 15.09 ? C22 L96 201 A 1 HETATM 6 N N2 L96 . . . B 2 5.269 7.525 17.537 1 14.6 ? N2 L96 201 A 1 HETATM 7 C C12 L96 . . . B 2 3.953 7.423 17.102 1 13.87 ? C12 L96 201 A 1 HETATM 8 C C5 L96 . . . B 2 3.137 6.964 18.197 1 12.43 ? C5 L96 201 A 1 HETATM 9 C C2 L96 . . . B 2 1.63 6.703 18.139 1 11.87 ? C2 L96 201 A 1 HETATM 10 C C1 L96 . . . B 2 0.606 7.704 17.918 1 12.28 ? C1 L96 201 A 1 HETATM 11 C C L96 . . . B 2 0.834 9.192 17.813 1 14.3 ? C L96 201 A 1 HETATM 12 N N1 L96 . . . B 2 -0.593 7.015 17.845 1 12.66 ? N1 L96 201 A 1 HETATM 13 N N L96 . . . B 2 -0.333 5.644 17.997 1 12.6 ? N L96 201 A 1 HETATM 14 C C3 L96 . . . B 2 1.001 5.38 18.153 1 11.82 ? C3 L96 201 A 1 HETATM 15 C C4 L96 . . . B 2 1.646 4.042 18.377 1 13.25 ? C4 L96 201 A 1 HETATM 16 C C6 L96 . . . B 2 4.006 6.811 19.358 1 13.81 ? C6 L96 201 A 1 HETATM 17 C C7 L96 . . . B 2 3.754 6.507 20.694 1 14.84 ? C7 L96 201 A 1 HETATM 18 C C8 L96 . . . B 2 4.775 6.542 21.603 1 14.62 ? C8 L96 201 A 1 HETATM 19 C C25 L96 . . . B 2 4.53 6.079 23.013 1 17.83 ? C25 L96 201 A 1 HETATM 20 C C26 L96 . . . B 2 3.39 6.733 23.785 1 16.24 ? C26 L96 201 A 1 HETATM 21 C C27 L96 . . . B 2 4.877 7.12 24.064 1 18.98 ? C27 L96 201 A 1 HETATM 22 C C9 L96 . . . B 2 6.091 6.861 21.173 1 16.28 ? C9 L96 201 A 1 HETATM 23 C C10 L96 . . . B 2 6.36 7.244 19.849 1 16.34 ? C10 L96 201 A 1 HETATM 24 C C11 L96 . . . B 2 5.355 7.242 18.871 1 14.61 ? C11 L96 201 A 1 HETATM 25 C C13 L96 . . . B 2 3.492 7.697 15.712 1 15.26 ? C13 L96 201 A 1 HETATM 26 C C14 L96 . . . B 2 3.182 6.721 14.764 1 14.12 ? C14 L96 201 A 1 HETATM 27 C C15 L96 . . . B 2 2.707 7.119 13.477 1 13.19 ? C15 L96 201 A 1 HETATM 28 C C16 L96 . . . B 2 2.631 8.497 13.15 1 13.24 ? C16 L96 201 A 1 HETATM 29 C C17 L96 . . . B 2 2.953 9.46 14.129 1 14.92 ? C17 L96 201 A 1 HETATM 30 C C18 L96 . . . B 2 3.41 9.089 15.397 1 13.57 ? C18 L96 201 A 1 HETATM 31 O O L96 . . . B 2 2.767 10.801 13.778 1 15.7 ? O L96 201 A 1 HETATM 32 C C19 L96 . . . B 2 2.846 11.874 14.717 1 14.29 ? C19 L96 201 A 1 HETATM 33 C C20 L96 . . . B 2 4.24 12.489 14.619 1 16.18 ? C20 L96 201 A 1 HETATM 34 C C21 L96 . . . B 2 1.695 12.818 14.305 1 13.59 ? C21 L96 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #